TCONS_00004295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004295
Unique NameTCONS_00004295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004295 ID=TCONS_00004295|Name=TCONS_00004295|organism=Clytia hemisphaerica|type=transcript|length=493bp
TATggattttaactgtttttaatgtttctatataTTATTTCTTTTAGACC
TGAAGATGGACATTATGTCCGAAATATAtagtcaaaataaaataatatta
atTGTTGGCTCAACTTTACTTgataaataacatGTCTTTTGGTGCATCCA
ATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATCCAGTGGACGAAAA
TGTGTTCGATCGCATTCAACTCATCAATGGAGACGATGATCATTTTGAAG
GCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGCTGAGTCAGCGA
GAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTGTTATGGCCGAA
CGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCCATATGAAAAACAAG
TGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCGATTCGTA
CCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGAT
Run BLAST on NCBI

transcript from alignment at sc0000041:417717..419036-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004295 ID=TCONS_00004295|Name=TCONS_00004295|organism=Clytia hemisphaerica|type=transcript|length=1320bp|location=Sequence derived from alignment at sc0000041:417717..419036- (Clytia hemisphaerica)
TATGGATTTTAACTGTTTTTAATGTTTCTATATATTATTTCTTTTAGACC
TGAAGATGGACATTATGTCCGAAATATATAGTCAAAATAAAATAATATTA
ATTGTTGGCTCAACTTTACTTGATAAATAACATGTATTACTTTATTGTAA
TTTAATGCGTTATGTATTGATGTTATGTTATGTATTGATGTTATGATCTT
ATTATCTTTTTTCCGGTCTGCACTTTGTCGACCTGTAACCTGTAACCTGT
AACCTGCGACCTGCGACCTGCGTTTTACACTAACCGTGTGAAGACGGAAG
ACGTAAATCATTTTTATAGTCCACATTTTCAAGGTGCCTAAACATTCATA
CAAATTCATATAAATAGGGGTGAATTAGGAAAGGGGAAATCAAATCAAAC
AAACCAACTCATAGGAGTAGAAAAGCATTGAAAAACTAGCAAAGATTTTG
CGAAGAGAAACATAATGGAAATATTCTTTTTTCTTCTTCCACTAATGATG
GGTAAACAAAATTTATAACAACTTACTCTTCTTTGATGTTGACTTTAATA
TTTGAGTGATTCGAATAATCTTACCTTCGCCTTCATACCGAAACTACGTT
TTCAAAGAATGTTTAAAATCTCTCTGACAACTCCTTTCACTGACATTTCA
GGTCTTTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAA
GGATCCAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAG
ACGATGGTAAGAAAAATCTCATTTGAAAAATCTTGACTTTGATCTTTAGA
CCATTGTACTGAAAATGCGAATTTCAGGATGCAAATCCTCTGTTTCCTTT
TCATGGTTAAAAACAAACAGTTCCTCTCAAAAAGATTTCAAATCTTTCAT
TTAGATCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAA
ATTGCTGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACAT
TGTTGTTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTT
CGTAAGTACATTTTGCAAATTTAAACAAAATCTGAAAAAAACATATTGAC
GCTATTTTCTGTATGGACCAATCTTGTCCCAAAATCATTTAACCAAAACT
TTTCGTTTCGTTTGAACACCAAAATAATCTTGTAGATTGAATCTCGATAT
CTTTTATTTCAGCATATGAAAAACAAGTGAAAGAAGCGATGCGAGAAGTG
GAAAGGTTGACTTGCATCCGATTCGTACCCAGGACTACACAAAGAGGATA
TGTCGAGTTCATCCGAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002384XLOC_002384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004295-exon-sc0000041-1575043694:418904..419036TCONS_00004295-exon-sc0000041-1575043694:418904..419036Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1575043694:418281..418385TCONS_00004295-exon-sc0000041-1575043694:418281..418385Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1575043694:417986..418132TCONS_00004295-exon-sc0000041-1575043694:417986..418132Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1575043694:417717..417824TCONS_00004295-exon-sc0000041-1575043694:417717..417824Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1510915933:418904..419036TCONS_00004295-exon-sc0000041-1510915933:418904..419036Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1510915933:418281..418385TCONS_00004295-exon-sc0000041-1510915933:418281..418385Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1510915933:417986..418132TCONS_00004295-exon-sc0000041-1510915933:417986..418132Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1510915933:417717..417824TCONS_00004295-exon-sc0000041-1510915933:417717..417824Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1491911889:418904..419036TCONS_00004295-exon-sc0000041-1491911889:418904..419036Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1491911889:418281..418385TCONS_00004295-exon-sc0000041-1491911889:418281..418385Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1491911889:417986..418132TCONS_00004295-exon-sc0000041-1491911889:417986..418132Clytia hemisphaericaexon
TCONS_00004295-exon-sc0000041-1491911889:417717..417824TCONS_00004295-exon-sc0000041-1491911889:417717..417824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:417717..419036 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754846	0.705008	0.598399	0.638501	0	0	0	0.454273	0	1.37478	0.4065	0.152253	0.438899	0.619018	0	0.919963	0.203731	0.259527	0	0	0.120781	0.692178	1.13012	0.546968	0.810444	1.08495	0.513849	0.548423	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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