TCONS_00004335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004335
Unique NameTCONS_00004335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004335 ID=TCONS_00004335|Name=TCONS_00004335|organism=Clytia hemisphaerica|type=transcript|length=336bp
ggtcggacatatttgtgattgccgcctacaGAGACTACCAAATTACTTGG
ATGTATTAACATGCAGCAAAAATATGCCACTCTCAATTTTCAAGAGGGCT
AAAGTAAATGTTTCCATTGGTCGGTCTTttggtctttgtttattttgtta
agaTGGTTGGTTGCGATAAGCCCCATAATAATTTCTGAAGAACAACAACT
GTACAAATCCATAACAAAATGTTCTCTATTTAAGAAACAGGATACCATGA
CCATTAGACCATTCCCTATCCATGTACAAACGATGGCAGCAGTGACCAGA
Gcagatcaatcaatcaatattaagaaaccaaagcaa
Run BLAST on NCBI

transcript from alignment at sc0000041:501034..501369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004335 ID=TCONS_00004335|Name=TCONS_00004335|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0000041:501034..501369 (Clytia hemisphaerica)
ttgctttggtttcttaatattgattgattgatctgCTCTGGTCACTGCTG
CCATCGTTTGTACATGGATAGGGAATGGTCTAATGGTCATGGTATCCTGT
TTCTTAAATAGAGAACATTTTGTTATGGATTTGTACAGTTGTTGTTCTTC
AGAAATTATTATGGGGCTTATCGCAACCAACCAtcttaacaaaataaaca
aagaccaaAAGACCGACCAATGGAAACATTTACTTTAGCCCTCTTGAAAA
TTGAGAGTGGCATATTTTTGCTGCATGTTAATACATCCAAGTAATTTGGT
AGTCTCtgtaggcggcaatcacaaatatgtccgacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002415XLOC_002415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004335-exon-sc0000041-1491911889:501034..501369TCONS_00004335-exon-sc0000041-1491911889:501034..501369Clytia hemisphaericaexon
TCONS_00004335-exon-sc0000041-1510915933:501034..501369TCONS_00004335-exon-sc0000041-1510915933:501034..501369Clytia hemisphaericaexon
TCONS_00004335-exon-sc0000041-1575043694:501034..501369TCONS_00004335-exon-sc0000041-1575043694:501034..501369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:501034..501369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56257	1.45244	1.42886	0	3.04038	4.27664	0	1.66283	0.40846	0.922013	0.50182	0.369541	1.03417	0	1.89895	2.91093	1.47931	2.38982	6.76434	2.79397	0.54563	1.66635	1.44781	0	0.662171	3.30213	1.46753	0.905298	0.191277	0.81478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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