TCONS_00004408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004408
Unique NameTCONS_00004408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004408 ID=TCONS_00004408|Name=TCONS_00004408|organism=Clytia hemisphaerica|type=transcript|length=1489bp
TAATATTTGAATCTTGTGCTGGCGACAAGTACACAAACTGACTAACAGCT
GATCGAAAACGTTAATTTggattttgagatatttttttcAGCAGGACTGA
TCGATTGATAAATATAGATTTTGATATTCAGATCATTTGAGTTTTGATAC
ACAAAGATGAAAGGCTTAATGAGGAAATTATCGAAAGACATGAAAGCATC
CAAGGAAATCATTGTTTGCGTGGAAGAGAAAGACGGCAAAGAAACGTTAA
CCTTGAAACGAAGCATCTCTCTCGAATCCCTCACCAAGATCCTCTCCAAA
AGCCAAGAAAGTTTAAAAGcaggaaaagaaaagaaaccacAAGTAGAACC
GAAGCGTAAATTATCCGGACTTTCTCTACGTATCCGTAAAATGAGCGCCC
AGACCGAATTAACGAGACGTGGCCGTATCTCGAGTAATAATGACGGATCT
CAGACAGAACTACGACGTGGACGTAATTCAAGTTTTGTCGAAGGTCGGCA
ACGTAAAGTCAGCATCCAGCCCGACTTTAACATCGGAAACGTCGTTATCC
CAGCCGAGAAACGAGTTCGTAAAGGAAGCCTTCAGCCCAACATGTTGACT
ATGGGACGACGTAACAGCACACTTTTGAAAAAGGACCCTAAAGCACGAAA
AATGAGCGTGCCAGCTAACATGAAATTTTCAACAGAACGCGTGCGTGTAC
GGCGTGTCAGTTTCGTGAATCAGAACACGGGTGAAACATTTCAGATGAAC
AAGAAATAATCACGTTGTTTAGAGTAATAtcacgaaaatctttttttctc
gtATACAACAGACGAATGAATAACAAGGAGAATGAGGCAAATGGATGCAT
GCAGCTAAGCCATAGAAGCAAGTAATGTTGCTTTCATCCGCTATGAGTAG
AGACCAATATAAGAGAGAActggcaaaataaataaacgacACTTACTTTC
ACTTTATCCGTATATAGTTCTTCAAAAACTCCTCAATTTCAATGGCATTT
CTTCTTTGGTCAAATTAAATGGACCTGAAACGTTAAAACAATATCTGATA
TTAAGCAGAATCAAGTTTGCTGCTGGGAAAGCAAACAAgattgtttttca
tgtttttagaGAAAGCGGTTTTTGATGCACTATTGATGTTTTTAacgaat
attattttttttacaaaaatattttttggatattGTACATAGAATACAAT
TTTTATGCATTAAATAAGTAACAAAATTCTTATGTATAATTCGATATATA
GGATATAGAGCGGTTACTCAATAAGGGCGACCtataaaatatttcacttt
tttataaaaaatatgtatataTCTTGAAAGATAAAAAACATTGCAGATAA
TTACACACCTATAGAATTcttcaggcccggcggaagcggggagactaggg
agacttcagcctccccacttttacggttgttccgccgggcctgttcTTCC
CAcagaaattttactttagtcATTGGTATACTAGAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00004408-protein

>TCONS_00004408-protein ID=TCONS_00004408-protein|Name=TCONS_00004408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKGLMRKLSKDMKASKEIIVCVEEKDGKETLTLKRSISLESLTKILSKSQ
ESLKAGKEKKPQVEPKRKLSGLSLRIRKMSAQTELTRRGRISSNNDGSQT
ELRRGRNSSFVEGRQRKVSIQPDFNIGNVVIPAEKRVRKGSLQPNMLTMG
RRNSTLLKKDPKARKMSVPANMKFSTERVRVRRVSFVNQNTGETFQMNKK
Run BLAST on NCBI

transcript from alignment at sc0000044:285391..291002-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004408 ID=TCONS_00004408|Name=TCONS_00004408|organism=Clytia hemisphaerica|type=transcript|length=5612bp|location=Sequence derived from alignment at sc0000044:285391..291002- (Clytia hemisphaerica)
TAATATTTGAATCTTGTGCTGGCGACAAGTACACAAACTGACTAACAGCT
GATCGAAAACGTTAATTTGGATTTTGAGATATTTTTTTCAGCAGGACTGA
TCGATTGATAAATATAGATTTTGATATTCAGATCATTTGAGTTTTGATAC
ACAAAGATGAAAGGCTTAATGAGGAAATTATCGAAAGGTGAGCTTTTTTT
GGAATTCTTTTGTTATCAATTCATTTTGAAAAGAATGTCGTCCACCAACC
CTTGGAGCTTTGTATTCATTCCACTTGGTGAAATTCAAAACCGTTCATTA
CAGCTTGTGGAGAAGTTAGATTGGTCCAACAGAGTACCATTAAAACATTC
GTTTTAGAGCTTTTACTAAAAATGTCAGCCATTCAAAACTTTTATGATAA
AATATTGTAACCTTCCAATCTGCTGGGCTTTTGGTTCGGATCTTCAATGG
GTCTTTGCGTACAACATACAATATTCAAGTATTATAGAGGTGCCACGTTA
TAACCATGAATATAGGAAGTGTAAAGAAAAGTCCTATATAGCATCTTTTT
TCAGGAAAGGTTGATGACTGCTAAGGTTTTCCTGCGAGAGGAAGGGATTT
TCAAACAAAGTGTGGTCGTTTGGTAGAACAGTGACAAACAAGCCTTTTTA
AAAGAAGCAGTAAATTTTGATTGAGGCATGGCTGTTCTTTTTTCGCGATT
TTCAGGCCTCATTTATGCCCACGTTATCAATAATTGGCTTTCAAAGGCGT
AAAATCAGCATTTTTTTCTAGCTATTCCTGAAATCTGAGGCTTGGATTGT
TCTTAATTTGTTCTAAAGTTTTTGACGAAATCGAGCCTCGTGTTCTTATA
AAATTGTTCGTAGAAAAAAAGTGTTTATACTTGGTTAGGAAGCCGTGTAT
GACATAACACTCCTCTTCCCTCTTTTAAAGTATACATGGAAAAATGCTAA
TTAAAACGCCCCCAATATTTTGTATGTAACGTTAACAATTTCCAAAAAAG
AATTTGAAAAACTGGAGCAGTCTATTGATGGTTGAATAAAAAAACAATCA
AAATGATAGACTTGGCGATTTTAATAAATTTTTGCNTGCATGACATAACA
CTCCTCTTCCCTCTTTTAAAGCATACATGGAAAAATGCTAATTAAAACGC
CTCCAATATTTTGTATGTATCGATAACAATTTCCAAAAAAGGATTTGAAA
AAACTGGAGCAGTCTATTGGTTGAATAAAAAAACAATCAAAATGATAGAC
TTGGTGATTTTAATAAACTTTTGTATTTTTGGGCTTCATTTGATGGTGCA
AGGAGCTTGCTAACTATAGGCAATAGAAACTCTCGTGTCCGTGTTCAATC
GTTCGGTGAGCCTGCGTTGTTATTCTTTTAGAAATGACAAATACAACTCA
AAATTATAGTCATGAATAGGAACGAAACCACAATTTCCTATAATTTCTTT
TATCTGTGACGATTGATTTGAAAGACCACTAAAGGTCACACTGTTCACAA
GGAAGAAAACAGAATCACACCAACCAACCACCAGGCAGGAGACGGAAAAG
CTAATAAAACAAACGATCAAAAGTACATAATTGAATTTAATTTTCCCTTA
CGTATATCGTCATCATTCTATTGGATTCATTAATAATTTCTAATGAGATC
CACACACATTATTGATGAGATAAATTAGATTAGGATACATGGCAATCCCG
TCCGTTCTTGCAACCACCAAATGGTTTTGAATGTTTCCTCACACTATGAC
GATGAATAGGAACTCCGTATCCAGTTGTTCTTTCCATTGTTAAGGAAGAA
TAAGAAATATTTCACATCTTCGTGTCACCTCGTCATCACTGGGTGGAGTT
TTCAACAAGGTCTCTATTTGATTGGATATCACAGCTATGATCAATTAGGG
ACTATTGTTTGTTGTATAAACTTCAGCATAGAAAAGATGTATCCATTTCG
CTGTTGGAGTTTTTTACAACGATACATGTAGCTCCATTGCTCTTTGTCTG
GTACGCAATAAACAATTCATTAACCATAAATCTTCGAAAAAGTTTCAAGC
TGATAATCATCGATTCTAGAGCTTTGATAATTATTGTGGTATTTCACAGC
TTCTTTTTCGTTTGTCAATCACCTATAATCCCATCAAAACATGAATTAAG
TCCATCATATCTAATTAAGAATGATTTGATTAGTCTCTGTTTAATCATCC
ATGTCCAGGTATATAAAGGAGGGCTGTGCACTACTTCATTAGTAGTGAGT
ACTGATGCATTTGGTTCAGGACTCGAATTTGACTTTGTATACTTGATTTA
CTCTACTGTATTTTTCATGTCATGCAAAGTATATGGAATTCCACTAGTAG
AAAGTTACGAAGAGGATTCTATTGTAAGTGTTTGTATTGAAAGGAGCACA
TAGTACTCATACTCTCGTATAGAAGTAATTACTTCACTTTGACGGTGAAG
GTTTTTTCATAATTAGGTAGTTAATGCTCTGCAATTAAGAGAAGGATCAA
GGATAAATGAAACAATCCAGATAGAAAAAGGGGCGCCCAACCCTTCCTTC
TATCGAATAAGGAGCCTTCGGGTCGCCTACGACTGCCGATAAAGTCTTAA
TTACTTTAAATGGTACAAGACCGTTCAACCATTACTTAAATTGTCAGGGT
TTTCTTAAGTAATTCCAGTCAACTCTCTCTAATTCGAACATCTATTATTC
TAATCTTTTTTGTAATTCGAACTAAAATATTGTGGTCCTCAGCTAGAAAG
TGGTTGAAATTACTCTCTTTAATTCGAATTTTTCTCTATTTCGAATGATA
TGTTTGGTCCCGTAACAAGTGATACTGATAAGTGAAGCCGTTGAAGGACA
TACACTTTTTTTATAAGAACCAGTAAAATTGTTCTGAGGCTCGGTTGTTC
TTATTTCTATGACACTTTGAGCCTCAAATTGTTCTTCTCCTGTTCTTATT
TAAAGGGTGAAATTGGAGGTATTTTAAACGCTATACCCAATTTTTACTAC
TCTAATCCCTAAATTGCTTGAAATTGAGCTATTTTGGGCTCAGAATTGCT
CTTAAATTGTTCTTATTTTTTGTCGATTTCGACCTTCATTGTTCTTATAA
AATTGTTTTTATATAAAAAAAAGTGTAACTGAGTTGGAGAGGAACACTTT
TTGCAACGTCATCCAATCATAGATTTTTAGCAAAACAACAAAATATCCTT
ATTAAGGTGTAAACATAACAATGATCTTACAGGATGGTAGCGATCAAAAA
GTACAAAATGACGGATTTTGATATCTCGATCGTCAATTACCGGTCTATTT
GTCCACTGTACGCCTTTCTTCCTCTAAATTGAAAAGACCACTAAATGGCA
GATCATTTAACGAAAGTAAGGGAGGCGGGTGAATAATATACTTAGGATCG
ACTGGTTTTATGTAGTCGGAAATCGGAAAATTTATTTAAGAACTCAGTGT
GAAGAAAATTTAGTATTGTAATGTCCTGAATGTTGCGGTGTGAACCTTAT
AAATGATTTTGCATATTTGGTTCCACCTTCGAAACAATAAAGGAATTCTC
TCAGGTTTATGTCCTGAATGTCTTGGCGTAAACCTTTTTGCATATTTATT
TTAAACTTCGAGGCAATAAAGAATTTCTCTCGGGCTTTGCAAGCCAAATG
CCACCGTTTTGGGTAGAATTAAGATTCCATTGGCCCTGTTTTTGCGGGAT
GGACGAGAGATGGTAAAGCGTTGTTTGTTGCTTGGCAGTGGAAGTTCAGT
CCGGGAAATGGGATCTTATCCGAAACGACATTAGGTGGACACAACAAACA
TAAATTAATCGAACAGAATAAAAACATTTTCGAAGATAAAGGAGCGGATA
TTACCGGATCGGATGTTTTTTGTCTCGCTTCAAACGAAATCATCAATCAA
ATTAAATTGAAGACAGTCCGAACAGAAGATTACATTTAAGCGGACCTGTC
ATATGAAAAATACATTTTCAACTTAAAAATCGTGATTTCAGTTTTGTTGA
ACATTTATTAATTAAAGGGTTGGGTTGAAGCTGGTCATTGAAGGTTCTAT
TTTTACATTTAAGTGTTCCTGTTTCATATCAGACACATTTTTCATATCAG
GACAGTGTCTGCCTATTGTTATATTACGCTGATATAAGCATAAGAATGTT
TTTCTTTTCCTCTTTCTGACCAATCTTGCTCCGCCTCCGTGTCAATCCAA
TGTGAAAAAGCTTGTGAATAGAAATTGAAAAGTAAGCAAACGATATCACT
CTATATAGCTTGTTCTTATAAAAAACGTGTAACCATGTTCTTGTTTCTTA
TATCTTTCAGACATGAAAGCATCCAAGGAAATCATTGTTTGCGTGGAAGA
GAAAGACGGCAAAGAAACGTTAACCTTGAAACGAAGCATCTCTCTCGAAT
CCCTCACCAAGATCCTCTCCAAAAGCCAAGAAAGTTTAAAAGCAGGAAAA
GAAAAGAAACCACAAGTAGAACCGAAGCGTAAATTATCCGGACTTTCTCT
ACGTATCCGTAAAATGAGCGCCCAGACCGAATTAACGAGACGTGGCCGTA
TCTCGAGTAATAATGACGGATCTCAGACAGAACTACGACGTGGACGTAAT
TCAAGTTTTGTCGAAGGTCGGCAACGTAAAGTCAGCATCCAGCCCGACTT
TAACATCGGAAACGTCGTTATCCCAGCCGAGAAACGAGTTCGTAAAGGAA
GCCTTCAGCCCAACATGTTGACTATGGGACGACGTAACAGCACACTTTTG
AAAAAGGACCCTAAAGCACGAAAAATGAGCGTGCCAGCTAACATGAAATT
TTCAACAGAACGCGTGCGTGTACGGCGTGTCAGTTTCGTGAATCAGAACA
CGGGTGAAACATTTCAGATGAACAAGAAATAATCACGTTGTTTAGAGTAA
TATCACGAAAATCTTTTTTTCTCGTATACAACAGACGAATGAATAACAAG
GAGAATGAGGCAAATGGATGCATGCAGCTAAGCCATAGAAGCAAGTAATG
TTGCTTTCATCCGCTATGAGTAGAGACCAATATAAGAGAGAACTGGCAAA
ATAAATAAACGACACTTACTTTCACTTTATCCGTATATAGTTCTTCAAAA
ACTCCTCAATTTCAATGGCATTTCTTCTTTGGTCAAATTAAATGGACCTG
AAACGTTAAAACAATATCTGATATTAAGCAGAATCAAGTTTGCTGCTGGG
AAAGCAAACAAGATTGTTTTTCATGTTTTTAGAGAAAGCGGTTTTTGATG
CACTATTGATGTTTTTAACGAATATTATTTTTTTTACAAAAATATTTTTT
GGATATTGTACATAGAATACAATTTTTATGCATTAAATAAGTAACAAAAT
TCTTATGTATAATTCGATATATAGGATATAGAGCGGTTACTCAATAAGGG
CGACCTATAAAATATTTCACTTTTTTATAAAAAATATGTATATATCTTGA
AAGATAAAAAACATTGCAGATAATTACACACCTATAGAATTCTTCAGGCC
CGGCGGAAGCGGGGAGACTAGGGAGACTTCAGCCTCCCCACTTTTACGGT
TGTTCCGCCGGGCCTGTTCTTCCCACAGAAATTTTACTTTAGTCATTGGT
ATACTAGAGAAA

Coding sequence (CDS) from alignment at sc0000044:285391..291002-

>TCONS_00004408 ID=TCONS_00004408|Name=TCONS_00004408|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000044:285391..291002- (Clytia hemisphaerica)
ACATGAAAGCATCCAAGGAAATCATTGTTTGCGTGGAAGAGAAAGACGGC
AAAGAAACGTTAACCTTGAAACGAAGCATCTCTCTCGAATCCCTCACCAA
GATCCTCTCCAAAAGCCAAGAAAGTTTAAAAGCAGGAAAAGAAAAGAAAC
CACAAGTAGAACCGAAGCGTAAATTATCCGGACTTTCTCTACGTATCCGT
AAAATGAGCGCCCAGACCGAATTAACGAGACGTGGCCGTATCTCGAGTAA
TAATGACGGATCTCAGACAGAACTACGACGTGGACGTAATTCAAGTTTTG
TCGAAGGTCGGCAACGTAAAGTCAGCATCCAGCCCGACTTTAACATCGGA
AACGTCGTTATCCCAGCCGAGAAACGAGTTCGTAAAGGAAGCCTTCAGCC
CAACATGTTGACTATGGGACGACGTAACAGCACACTTTTGAAAAAGGACC
CTAAAGCACGAAAAATGAGCGTGCCAGCTAACATGAAATTTTCAACAGAA
CGCGTGCGTGTACGGCGTGTCAGTTTCGTGAATCAGAACACGGGTGAAAC
ATTTCAGATGAACAAGAAATAAATGAAAGGCTTAATGAGGAAATTATCGA
AAGACATGAAAGCATCCAAGGAAATCATTGTTTGCGTGGAAGAGAAAGAC
GGCAAAGAAACGTTAACCTTGAAACGAAGCATCTCTCTCGAATCCCTCAC
CAAGATCCTCTCCAAAAGCCAAGAAAGTTTAAAAGCAGGAAAAGAAAAGA
AACCACAAGTAGAACCGAAGCGTAAATTATCCGGACTTTCTCTACGTATC
CGTAAAATGAGCGCCCAGACCGAATTAACGAGACGTGGCCGTATCTCGAG
TAATAATGACGGATCTCAGACAGAACTACGACGTGGACGTAATTCAAGTT
TTGTCGAAGGTCGGCAACGTAAAGTCAGCATCCAGCCCGACTTTAACATC
GGAAACGTCGTTATCCCAGCCGAGAAACGAGTTCGTAAAGGAAGCCTTCA
GCCCAACATGTTGACTATGGGACGACGTAACAGCACACTTTTGAAAAAGG
ACCCTAAAGCACGAAAAATGAGCGTGCCAGCTAACATGAAATTTTCAACA
GAACGCGTGCGTGTACGGCGTGTCAGTTTCGTGAATCAGAACACGGGTGA
AACATTTCAGATGAACAAGAAATAAATGAAAGGCTTAATGAGGAAATTAT
CGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002466XLOC_002466Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004408-proteinTCONS_00004408-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004408-exon-sc0000044-1575043694:290816..291002TCONS_00004408-exon-sc0000044-1575043694:290816..291002Clytia hemisphaericaexon
TCONS_00004408-exon-sc0000044-1575043694:285391..286692TCONS_00004408-exon-sc0000044-1575043694:285391..286692Clytia hemisphaericaexon
TCONS_00004408-exon-sc0000044-1510915933:290816..291002TCONS_00004408-exon-sc0000044-1510915933:290816..291002Clytia hemisphaericaexon
TCONS_00004408-exon-sc0000044-1510915933:285391..286692TCONS_00004408-exon-sc0000044-1510915933:285391..286692Clytia hemisphaericaexon
TCONS_00004408-exon-sc0000044-1491911889:290816..291002TCONS_00004408-exon-sc0000044-1491911889:290816..291002Clytia hemisphaericaexon
TCONS_00004408-exon-sc0000044-1491911889:285391..286692TCONS_00004408-exon-sc0000044-1491911889:285391..286692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:285391..291002 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.083151	0.0810853	0.0627652	0.0614059	0.373779	0.118146	0.178173	0.0333606	0.470218	0.520756	0	0.258431	11.6317	12.2851	31.6031	16.4846	6.38776	4.89981	6.27578	8.77878	0.0805969	0.0392139	0	0	0	0.186903	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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