TCONS_00004426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004426
Unique NameTCONS_00004426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004426 ID=TCONS_00004426|Name=TCONS_00004426|organism=Clytia hemisphaerica|type=transcript|length=554bp
tgacagattaCTGAATATCAAAGTATACAACTAGATAAAAGATTttattg
aagaagaaaatgaatggAGAAACAAAGAACACAAGTTGTGTCACACCACG
GAAACTAAAATTTGAACAAGTGCGTGCAGACTATgaactttttcttcaaa
catttgaaagACCTACCTGGATCTATCGATTGCTTCACAGAAGACATCAA
CTTTCACCGTTTTTGCTTCATCGAAATCTATCATACATTCAGAAGAATCG
AAGGCATCTGAAGAAAGATTCTGGGTCCACAAGAAAAAGCAGGAAAGGCT
TTGATACTGCTTCATTGCTTGATCGTGCGGTTGctgaaaataaaaggaaa
aataaacaacaacaaaaagatgaagaaggtTTGGAAGCAGAAAAGTAAGT
ACAGCTAaaaactctctctctaatttgattttcaaaaaacccaaaatttt
ccaattcaaaTTGTGGAGAGTGTTTTATATGACTTTTGAAACGGACTCCA
AAACTAGggaatcaaaatttttcggtgAAAGTTACAGAAAGGTTTGAATT
AGAG
Run BLAST on NCBI

protein sequence of TCONS_00004426-protein

>TCONS_00004426-protein ID=TCONS_00004426-protein|Name=TCONS_00004426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MNGETKNTSCVTPRKLKFEQVRADYELFLQTFERPTWIYRLLHRRHQLSP
FLLHRNLSYIQKNRRHLKKDSGSTRKSRKGFDTASLLDRAVAENKRKNKQ
QQKDEEGLEAEK
Run BLAST on NCBI

transcript from alignment at sc0000044:679443..680907-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004426 ID=TCONS_00004426|Name=TCONS_00004426|organism=Clytia hemisphaerica|type=transcript|length=1465bp|location=Sequence derived from alignment at sc0000044:679443..680907- (Clytia hemisphaerica)
TGACAGATTACTGAATATCAAAGTATACAACTAGATAAAAGATTTTATTG
AAGAAGAAAATGAATGGAGAAACAAAGAACACAAGTTGTGTCACACCACG
GAAACTAAAATTTGAACAAGTGCGTGCAGACTATGAACTTTTTCTTCAAA
CATTTGAAAGTAAGTGATTATATTGTCTCAGGAAAGGCCTGAAAAGTCTC
AAAGGATGCCCAAAGGGAACTTTGACTTTCAAAGAAAACAACAAAATAAG
TTATCAAACATTCCAATCATTTTCTATTTAGCGTAGGGGTCATATACGCA
ATGAATCTTTGTTTGATTTGCGTCATTCCTTTTATTCTCTGTGTTTCAGG
TGGCCCCTGGGGAGACAATAGCTCAGCTACTTAAAAGCTGAGTTATTATT
ACATGGCCACAGCGTCTTAAAATATTAGTCATTTTTATTATCATTATAAT
TACAAAGGATGACCGGGTGCATACATACGCAATTTGACCCCATTATGATG
CCTTAAAAGTGCTCAATACTAATCAGGCATAAATCTTATAAAATTACTTA
ATTTATATTATTCTTATTTTTATCAAATTTGTTGAAATGAAGACATATAC
AAATCATGCAAAATGTCCCAAATGCCTATTATTTTTCTTTTTTTCTGAAG
TAAAAAGTTTTGGAATTTTTCTAATCCTTCTATAATTTTTTCATGATTTT
AGGACCTACCTGGATCTATCGATTGCTTCACAGAAGACATCAACTTTCAG
TGAGAATTTTTGTAGCTCTTGCTCACTCACAATTCAACTGTGATTTTTAA
AACTCACTGTGAAATCAGTTTTATTCAGGTTTGTCATTTAAGAGTATAAA
TGAGATACAAGAAAACTTCTTCATAAATGATATCAAAAGTAATTCACATT
CTTTTCATTTCATACAGCCGTTTTTGCTTCATCGAAATCTATCATACATT
CAGAAGAATCGAAGGCATCTGAAGAAAGATTCTGGGTCCACAAGAAAAAG
CAGGTTTGTTTTCATAGGTACCATTTGGTTGTAACAAACCACCGCAACTT
TCAAGTCTAACAACATGTGAAAATAATATAATATTAAAAAAATACACTAA
ATAGTCTACCCTCAAAATTGCAAAATCGAAATGACACTGGAACACATTTG
CCTCTTTTTCCAAATAAAATTTGATTTTCTCATACTAATTGTGTTTTTGC
TAGGAAAGGCTTTGATACTGCTTCATTGCTTGATCGTGCGGTTGCTGAAA
ATAAAAGGAAAAATAAACAACAACAAAAAGATGAAGAAGGTTTGGAAGCA
GAAAAGTAAGTACAGCTAAAAACTCTCTCTCTAATTTGATTTTCAAAAAA
CCCAAAATTTTCCAATTCAAATTGTGGAGAGTGTTTTATATGACTTTTGA
AACGGACTCCAAAACTAGGGAATCAAAATTTTTCGGTGAAAGTTACAGAA
AGGTTTGAATTAGAG

Coding sequence (CDS) from alignment at sc0000044:679443..680907-

>TCONS_00004426 ID=TCONS_00004426|Name=TCONS_00004426|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000044:679443..680907- (Clytia hemisphaerica)
GAAAGGCTTTGATACTGCTTCATTGCTTGATCGTGCGGTTGCTGAAAATA
AAAGGAAAAATAAACAACAACAAAAAGATGAAGAAGGTTTGGAAGCAGAA
AAGTAACCGTTTTTGCTTCATCGAAATCTATCATACATTCAGAAGAATCG
AAGGCATCTGAAGAAAGATTCTGGGTCCACAAGAAAAAGCAGGACCTACC
TGGATCTATCGATTGCTTCACAGAAGACATCAACTTTCAATGAATGGAGA
AACAAAGAACACAAGTTGTGTCACACCACGGAAACTAAAATTTGAACAAG
TGCGTGCAGACTATGAACTTTTTCTTCAAACATTTGAAAGAAAGGCTTTG
ATACTGCTTCATTGCTTGATCGTGCGGTTGCTGAAAATAAAAGGAAAAAT
AAACAACAACAAAAAGATGAAGAAGGTTTGGAAGCAGAAAAGTAACCGTT
TTTGCTTCATCGAAATCTATCATACATTCAGAAGAATCGAAGGCATCTGA
AGAAAGATTCTGGGTCCACAAGAAAAAGCAGGACCTACCTGGATCTATCG
ATTGCTTCACAGAAGACATCAACTTTCAATGAATGGAGAAACAAAGAACA
CAAGTTGTGTCACACCACGGAAACTAAAATTTGAACAAGTGCGTGCAGAC
TATGAACTTTTTCTTCAAACATTTGAAAGAAAGGCTTTGATACTGCTTCA
TTGCTTGATCGTGCGGTTGCTGAAAATAAAAGGAAAAATAAACAACAACA
AAAAGATGAAGAAGGTTTGGAAGCAGAAAAGTAACCGTTTTTGCTTCATC
GAAATCTATCATACATTCAGAAGAATCGAAGGCATCTGAAGAAAGATTCT
GGGTCCACAAGAAAAAGCAGGACCTACCTGGATCTATCGATTGCTTCACA
GAAGACATCAACTTTCAATGAATGGAGAAACAAAGAACACAAGTTGTGTC
ACACCACGGAAACTAAAATTTGAACAAGTGCGTGCAGACTATGAACTTTT
TCTTCAAACATTTGAAAGAAAGGCTTTGATACTGCTTCATTGCTTGATCG
TGCGGTTGCTGAAAATAAAAGGAAAAATAAACAACAACAAAAAGATGAAG
AAGGTTTGGAAGCAGAAAAGTAACCGTTTTTGCTTCATCGAAATCTATCA
TACATTCAGAAGAATCGAAGGCATCTGAAGAAAGATTCTGGGTCCACAAG
AAAAAGCAGGACCTACCTGGATCTATCGATTGCTTCACAGAAGACATCAA
CTTTCAATGAATGGAGAAACAAAGAACACAAGTTGTGTCACACCACGGAA
ACTAAAATTTGAACAAGTGCGTGCAGACTATGAACTTTTTCTTCAAACAT
TTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002475XLOC_002475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004426-exon-sc0000044-1575043694:680749..680907TCONS_00004426-exon-sc0000044-1575043694:680749..680907Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1575043694:680159..680205TCONS_00004426-exon-sc0000044-1575043694:680159..680205Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1575043694:679905..679990TCONS_00004426-exon-sc0000044-1575043694:679905..679990Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1575043694:679443..679704TCONS_00004426-exon-sc0000044-1575043694:679443..679704Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1510915933:680749..680907TCONS_00004426-exon-sc0000044-1510915933:680749..680907Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1510915933:680159..680205TCONS_00004426-exon-sc0000044-1510915933:680159..680205Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1510915933:679905..679990TCONS_00004426-exon-sc0000044-1510915933:679905..679990Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1510915933:679443..679704TCONS_00004426-exon-sc0000044-1510915933:679443..679704Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1491911889:680749..680907TCONS_00004426-exon-sc0000044-1491911889:680749..680907Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1491911889:680159..680205TCONS_00004426-exon-sc0000044-1491911889:680159..680205Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1491911889:679905..679990TCONS_00004426-exon-sc0000044-1491911889:679905..679990Clytia hemisphaericaexon
TCONS_00004426-exon-sc0000044-1491911889:679443..679704TCONS_00004426-exon-sc0000044-1491911889:679443..679704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004426-proteinTCONS_00004426-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:679443..680907 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.5668	22.3623	16.5336	17.2008	34.6694	27.5058	23.2689	24.3832	14.2983	18.2474	14.3775	8.28691	11.4898	10.3697	14.2478	17.734	18.5273	26.2694	8.74519	8.57926	13.5219	15.5673	25.9396	28.6211	17.4445	15.1747	8.88337	9.33009	19.061	23.9554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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