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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004431 ID=TCONS_00004431|Name=TCONS_00004431|organism=Clytia hemisphaerica|type=transcript|length=2186bp
ctagccggtggTTGCTCTTGAAAAATCTTTGATCCAGTCAGTATGGCCTC
TCGGTATTCGagcaaaaggaaaaaaagaaactATACAATGTCGCCAAACT
ATCTGAAACTATACATAAATTTATACAAAAAAGGATTTAACATAATTACA
ATACATTGCTCTAAATATTCAATATGCTACATTATCCCCGGATGATTTTT
TGTAGCTTCGTGTACTAATTacagattgaaaaaaaaatactttcttttat
gacgtcacatcATAATCAGAAGAAGAAATACCTGgttacaaattattttt
ttttgacatgatttgtgataatattaataataaataaatattaaatcAAA
ACGTTACAAtattaaattgcttaaaatacgTAGAGCTAGGAAATAGAATT
TAAAGTTACATAAAAAATTGAGATCACGACACAACCAAATATAGTGTAAA
CTGAATCGCAATCCTGTCGAAATAGCACAACCTAGTGGGTCATGCCAGCC
TCAAAAGCATAAGCAAAAGCATTATGGAAAATACGGTGAAAACAATTTAA
AACCAGAACTATGAGAAGTActaaaatctatgaaaagctaagatttcaaa
atattgttatttaacaaatcaatttcatcaaacctAAGGTTTGGTTTTAA
TGTTCGTGTACCGCGAATACATCCCGAATACATGTTACGACTGATCTCGT
TAAAGCAAACGAAATTTTTGTTCTAATCcaatttacaaatttacaaATAC
AGTAATCCTACATAATATCTTTTCACTCATCACAACCCTCTATAAGTCGA
ATTTTTCATAACTCAACCTAATCTCAATTCCAAGTTATTCATAGTTTGTA
ACGCAGAgtattatcTGAAGCTTCTAGAGTTGCGACAACTTTTTGTGGAT
TTTGTAGGCCTACTATTCAACTGCTACTTTGGGGAAGCCGTGGTAACATT
AAGGCCAACGTCCTTTAAAGTTCTGGCTGTAGTAGGTGTTGACCTTTTTA
CATCCAGAGCTACAGATTTagtcaaagtttttttagtAGTACTTAACAAA
GCTTGAAGTTTTTTCTTGTGATCTTGATAATCTCTTAAGCGAGTGAAATT
TTGCATCTCATGAGTTTTGATACGTCCAAGTTCGAGACCGGCTTTAACTT
CTAGAAATTCACGAAACGGTGGAAATTTAACTGGATGAGTGACAACCAAA
TCTGCTGAGTATTCTAGTTTAACGTTATACATAAGGAAACTTTTAAATTC
GTGTTTCACTTTTCCACCTGCAAGGTTCACCAAATGTCCAATATACGCGT
CATCTATCTTTAAAGGGGTTTCCCAATTAAAATAGGGAATCATATGCTCA
ATTATATAGTGCGATAAGATGTAACCACCTCCACTGCAATAaggatcaaa
aaatttcttaggCCATTCTTCAAGGGATACACCATAACGTCCTTTATTCC
GTTCTGGAGGCTGTCCAAACATTGCGTTACCAACAAAATTCTCCTTCGAC
CAAgttccgttcaattttgtcaacaAGCGCTGCATATGGATAAAGACATC
ATCATCACTTTTGAAAACAAACtcgaaattaaatttagtgTAAACCCAGA
ATAAAGCCGTCATTACTTTTTGAGAAAGTTTATGAAAATCTTCTTGGATG
TCTAGAATCAACATATCTCCATATTTCTGAGATTCTTCCATTAATTTATC
ATAAGTATCCTTCATATCCCGTTGCACAGCCCCTatgttaaaaatcactt
gccaATGTTCATGAGTTTCGTTCCAGAATGTTTGGTTACCCCATGCTTTT
CGAATCCATTGGCGGCGATCGAAGTGCTTCGCAAATGAGGTTACCAGAAC
GATAACTTTATAGTGTTCTTTGCAATCCAAAGTGACTTTATCAACTAAAA
CATGAGGACGAAACATACTGTATTTCTTATTCTCGCTTTCTTTGGAATTC
TGAACATGGactaatgtttttaatttttcacgcTGTACGCGATAGCTTTC
CCAATCAgccaattttttaattttatcgtCAAAATCTTTCATATTATTTC
GTATTTCATTCAGCTGTTTAACGATGACGCTCTCTGATGTAGGCGTTTGG
GCGGTCGATTTTGTTGTAGGTATCGAAGTTGTATTACCTAAGAAGAATGt
gtaaataaatgtaaattttgcttaAACCAAATTTCC Run BLAST on NCBI transcript from alignment at sc0000044:768116..770632- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004431 ID=TCONS_00004431|Name=TCONS_00004431|organism=Clytia hemisphaerica|type=transcript|length=2517bp|location=Sequence derived from alignment at sc0000044:768116..770632- (Clytia hemisphaerica)
CTAGCCGGTGGTTGCTCTTGAAAAATCTTTGATCCAGTCAGTATGGCCTC
TCGGTATTCGAGCAAAAGGAAAAAAAGAAACTATACAATGTCGCCAAACT
ATCTGAAACTATACATAAATTTATACAAAAAAGGATTTAACATAATTACA
ATACATTGCTCTAAATATTCAATATGCTACATTATCCCCGGATGATTTTT
TGTAGCTTCGTGTACTAATTACAGATTGAAAAAAAAATACTTTCTTTTAT
GACGTCACATCATAATCAGAAGAAGAAATACCTGGTTACAAATTATTTTT
TTTTGACATGATTTGTGATAATATTAATAATAAATAAATATTAAATCAAA
ACGTTACAATATTAAATTGCTTAAAATACGTAGAGCTAGGAAATAGAATT
TAAAGTTACATAAAAAATTGAGATCACGACACAACCAAATATAGTGTAAA
CTGAATCGCAATCCTGTCGAAATAGCACAACCTAGTGGGTCATGCCAGCC
TCAAAAGCATAAGCAAAAGCATTATGGAAAATACGGTGAAAACAATTTAA
AACCAGAACTATGAGAAGTACTAAAATCTATGAAAAGCTAAGATTTCAAA
ATATTGTTATTTAACAAATCAATTTCATCAAACCTAAGGTTTGGTTTTAA
TGTTCGTGTACCGCGAATACATCCCGAATACATGTTACGACTGATCTCGT
TAAAGCAAACGAAATTTTTGTTCTAATCCAATTTACAAATTTACAAATAC
AGTAATCCTACATAATATCTTTTCACTCATCACAACCCTCTATAAGTCGA
ATTTTTCATAACTCAACCTAATCTCAATTCCAAGTTATTCATAGTTTGTA
ACGCAGAGTNCCACCTCCACTGCAATAAGGATCAAAAAATTTCTTAGGCC
ATTCTTCAAGGGATACACCATAACGTCCTTTATTCCGTTCTGGAGGCTGT
CCAAACATTGCGTTACCAACAAAATTCTCCTTCGACCAAGTTCCGTTCAA
TTTTGTNTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGG
ACAAGTGACGAATATTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCG
TTTACCAACTATCAACATATGACGAATTTTTCCCCGACGAAAATTTTCAC
CGACGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGGTATTATCTGAA
GCTTCTAGAGTTGCGACAACTTTTTGTGGATTTTGTAGGCCTACTATTCA
ACTGCTACTTTGGGGAAGCCGTGGTAACATTAAGGCCAACGTCCTTTAAA
GTTCTGGCTGTAGTAGGTGTTGACCTTTTTACATCCAGAGCTACAGATTT
AGTCAAAGTTTTTTTAGTAGTACTTAACAAAGCTTGAAGTTTTTTCTTGT
GATCTTGATAATCTCTTAAGCGAGTGAAATTTTGCATCTCATGAGTTTTG
ATACGTCCAAGTTCGAGACCGGCTTTAACTTCTAGAAATTCACGAAACGG
TGGAAATTTAACTGGATGAGTGACAACCAAATCTGCTGAGTATTCTAGTT
TAACGTTATACATAAGGAAACTTTTAAATTCGTGTTTCACTTTTCCACCT
GCAAGGTTCACCAAATGTCCAATATACGCGTCATCTATCTTTAAAGGGGT
TTCCCAATTAAAATAGGGAATCATATGCTCAATTATATAGTGCGATAAGA
TGTAACCACCTCCACTGCAATAAGGATCAAAAAATTTCTTAGGCCATTCT
TCAAGGGATACACCATAACGTCCTTTATTCCGTTCTGGAGGCTGTCCAAA
CATTGCGTTACCAACAAAATTCTCCTTCGACCAAGTTCCGTTCAATTTTG
TCAACAAGCGCTGCATATGGATAAAGACATCATCATCACTTTTGAAAACA
AACTCGAAATTAAATTTAGTGTAAACCCAGAATAAAGCCGTCATTACTTT
TTGAGAAAGTTTATGAAAATCTTCTTGGATGTCTAGAATCAACATATCTC
CATATTTCTGAGATTCTTCCATTAATTTATCATAAGTATCCTTCATATCC
CGTTGCACAGCCCCTATGTTAAAAATCACTTGCCAATGTTCATGAGTTTC
GTTCCAGAATGTTTGGTTACCCCATGCTTTTCGAATCCATTGGCGGCGAT
CGAAGTGCTTCGCAAATGAGGTTACCAGAACGATAACTTTATAGTGTTCT
TTGCAATCCAAAGTGACTTTATCAACTAAAACATGAGGACGAAACATACT
GTATTTCTTATTCTCGCTTTCTTTGGAATTCTGAACATGGACTAATGTTT
TTAATTTTTCACGCTGTACGCGATAGCTTTCCCAATCAGCCAATTTTTTA
ATTTTATCGTCAAAATCTTTCATATTATTTCGTATTTCATTCAGCTGTTT
AACGATGACGCTCTCTGATGTAGGCGTTTGGGCGGTCGATTTTGTTGTAG
GTATCGAAGTTGTATTACCTAAGAAGAATGTGTAAATAAATGTAAATTTT
GCTTAAACCAAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004431-exon-sc0000044-1575043694:769776..770632 | TCONS_00004431-exon-sc0000044-1575043694:769776..770632 | Clytia hemisphaerica | exon |
| TCONS_00004431-exon-sc0000044-1575043694:768116..769444 | TCONS_00004431-exon-sc0000044-1575043694:768116..769444 | Clytia hemisphaerica | exon |
| TCONS_00004431-exon-sc0000044-1510915933:769776..770632 | TCONS_00004431-exon-sc0000044-1510915933:769776..770632 | Clytia hemisphaerica | exon |
| TCONS_00004431-exon-sc0000044-1510915933:768116..769444 | TCONS_00004431-exon-sc0000044-1510915933:768116..769444 | Clytia hemisphaerica | exon |
| TCONS_00004431-exon-sc0000044-1491911889:769776..770632 | TCONS_00004431-exon-sc0000044-1491911889:769776..770632 | Clytia hemisphaerica | exon |
| TCONS_00004431-exon-sc0000044-1491911889:768116..769444 | TCONS_00004431-exon-sc0000044-1491911889:768116..769444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:768116..770632 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00004431 vs. Swiss-Prot (Human)
Match: B3GN2 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=B3GNT2 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 6.739e-20 Identity = 66/225 (29.33%), Postives = 112/225 (49.78%), Query Frame = -1
Query: 1218 CKEHYKVIVLVTSFAKHFDRRQWIRKAWGNQTFWNETHEHWQVIFNIGAV--QRDMKDTYDKLMEESQKYGDMLILDIQEDFHKLSQKVMTALFWVYTKF-NFEFVFKSDDDVFIHMQRLLTKLNG---TWSKENFVGNAMFGQPPERNKGRYGVSLEEWPKKFFDPYCSGGGYILSHYIIEHMIPYFNWETPLKIDDAYIGHLVNLAGGKVKHEFKSFLMYNVK 1874
C + +++ + S HF RRQ IR++WG ++ N ++ +F +G + + D D L ES+K+ D+L+ + ++ F LS K + L WV T + EFVFK DDDVF++ +L LN T +K+ F+G+ + P R+K E + PY GGG++ S ++ + + IDD Y G + G V + K F ++++
Sbjct: 138 CAKKPFLLLAIKSLTPHFARRQAIRESWGQES--NAGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKL-GLVPEKHKGFRTFDIE 359
The following BLAST results are available for this feature:
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