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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004432 ID=TCONS_00004432|Name=TCONS_00004432|organism=Clytia hemisphaerica|type=transcript|length=1217bp
GTCGGTTTTAAAAGGCGAAATGCAAAGAAAAGACTTTTTTCAGTCGTAAT
AAGCTTAATCTTCAGAAggcaaattttttgattttggccCCTAATTGGAA
CACCCGTTCCGCCTACGGtttaagtttttgaatttaataACCTTGCTTAC
AGTGTGAATAAAAGAACTACGGTATAAAAATATAAGTTTACAATTTTCTA
TTTCAATACCCGGACGGCCTTTGGAACGACAAACATTTAAAAGcaactga
atttttttgttaaaaacattttaagagcaAACGAAATTGATTTCACTATT
ATGGATGCTCTATGTGCTAGTTTTGGCGGAtaataattcgaatctttttt
cgtttttagttTTCTTAATGGTTCTCGTGTAGTTTCAAATGGTTTTCGCG
AGGCCCTTCATGGTTTTCGTGTAGTCCTCAATTGTTTTTGCGTAGCCCTT
GATGGTTTTCGCGTAGTCCTCGATTGTTTTCGTGCAGTGTTCAATGGTTT
TCGTGTAATCGTTGTTGATTTTCGCGTAGTCCTTGATGGTTTTTGCGTAG
TGTTCAATGGTTTTCGCGTAGTTCTTGATGGTTTTTGAGTAGTGTTCAGT
GGTTTTCGCGTAGTCCTTGAAGGTTTTCGTATAATCGTCATTGATTTTCG
CGTAGTCTTCGATGGTTTTTGCGTGGTGCTGCTCAACCaagctttctttt
gttttttataaatattataGTCATTTAAGCtaaagaaattttgtatttcG
TGAGTTTTAATCCGTCCAACTTCGAGAGCAACTTTAACTTCTACAAATTC
ACGGAAATCTGCAAACTTTAATGGATGTGTAACGACCAAGGTTGGTAAAT
ATTCGAGCCAATCATTCCACATTAGAAAGCTCCTATGATCGTGATAAACT
TTACCACCTGCTAAAGTAACCAAATGTCCAATATACGCGTCATCTATCTT
TAAAGGGGTTTCCCAATTAAAATGCGGAATCATATGCTCGATTATATAAT
GCGATAGAACGTATCCACCTCCGCTGCAATAAGGATCATAATATTTACCC
GGCCATTCTTTAAGAGATACGCCGTAACGGCCTTTATTCCGTTCGGGAGG
CTGTCCGCGCATAGCGTGACCAATAAAGTGTTCATCAGACCAAGTTGTAt
ttaatttcaacaacaaacGGTGTATGTGGATAAAAACATCATCATCTGTC
TTAAAAACAAACTCANG Run BLAST on NCBI transcript from alignment at sc0000044:773860..775349- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004432 ID=TCONS_00004432|Name=TCONS_00004432|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at sc0000044:773860..775349- (Clytia hemisphaerica)
GTCGGTTTTAAAAGGCGAAATGCAAAGAAAAGACTTTTTTCAGTCGTAAT
AAGCTTAATCTTCAGAAGGCAAATTTTTTGATTTTGGCCCCTAATTGGAA
CACCCGTTCCGCCTACGGTTTAAGTTTTTGAATTTAATAACCTTGCTTAC
AGTGTGAATAAAAGAACTACGGTATAAAAATATAAGTTTACAATTTTCTA
TTTCAATACCCGGACGGCCTTTGGAACGACAAACATTTAAAAGCAACTGA
ATTTTTTTGTTAAAAACATTTTAAGAGCAAACGAAATTGATTTCACTATT
ATGGATGCTCTATGTGCTAGTTTTGGCGGATAATAATTCGAATCTTTTTT
CGTTTTTAGTTTTCTTAATGGTTCTCGTGTAGTTTCAAATGGTTTTCGCG
AGGCCCTTCATGGTTTTCGTGTAGTCCTCAATTGTTTTTGCGTAGCCCTT
GATGGTTTTCGCGTAGTCCTCGATTGTTTTCGTGCAGTGTTCAATGGTTT
TCGTGTAATCGTTGTTGATTTTCGCGTAGTCCTTGATGGTTTTTGCGTAG
TGTTCAATGGTTTTCGCGTAGTTCTTGATGGTTTTTGAGTAGTGTTCAGT
GGTTTTCGCGTAGTCCTTGAAGGTTTTCGTATAATCGTCATTGATTTTCG
CGTAGTCTTCGATGGTTTTTGCGTGGTGCTGCTCAACCAAGCTTTCTTTT
GTTTTTTATAAATATTATAGTCATTTAAGCTAAAGAAATTTTGTATTTCG
TGAGTTTTAATCCGTCCAACTTCGAGAGCAACTTTAACTTCTACAAATTC
ACGGAAATCTGCAAACTTTAATGGATGTGTAACGACCAAGGTTGGTAAAT
ATTCGAGCCAATCATTCCACATANATTCTTATAAGACGCAACTTTGCTAA
CTTTGATAATTTTATTTAGCTTGTACTGAGTTATGGGTGCAAAATTGAAA
ACATAAGCTATGAAAGCTATGAAAGAAGAGTTTATGTCATCAAAAAAAGC
CACCCAACCTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGGTAGGTAGGT
AGGAGTAGCGTATTAGCGGGAGGATAAACAGTGTTATCGTCCGTTACAGG
AATACTAAAGGCGAGTTCAAAGCCGTAATGGCGGTANTTCCACATTAGAA
AGCTCCTATGATCGTGATAAACTTTACCACCTGCTAAAGTAACCAAATGT
CCAATATACGCGTCATCTATCTTTAAAGGGGTTTCCCAATTAAAATGCGG
AATCATATGCTCGATTATATAATGCGATAGAACGTATCCACCTCCGCTGC
AATAAGGATCATAATATTTACCCGGCCATTCTTTAAGAGATACGCCGTAA
CGGCCTTTATTCCGTTCGGGAGGCTGTCCGCGCATAGCGTGACCAATAAA
GTGTTCATCAGACCAAGTTGTATTTAATTTCAACAACAAACGGTGTATGT
GGATAAAAACATCATCATCTGTCTTAAAAACAAACTCANG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004432-exon-sc0000044-1575043694:774480..775349 | TCONS_00004432-exon-sc0000044-1575043694:774480..775349 | Clytia hemisphaerica | exon |
| TCONS_00004432-exon-sc0000044-1575043694:773860..774206 | TCONS_00004432-exon-sc0000044-1575043694:773860..774206 | Clytia hemisphaerica | exon |
| TCONS_00004432-exon-sc0000044-1510915933:774480..775349 | TCONS_00004432-exon-sc0000044-1510915933:774480..775349 | Clytia hemisphaerica | exon |
| TCONS_00004432-exon-sc0000044-1510915933:773860..774206 | TCONS_00004432-exon-sc0000044-1510915933:773860..774206 | Clytia hemisphaerica | exon |
| TCONS_00004432-exon-sc0000044-1491911889:774480..775349 | TCONS_00004432-exon-sc0000044-1491911889:774480..775349 | Clytia hemisphaerica | exon |
| TCONS_00004432-exon-sc0000044-1491911889:773860..774206 | TCONS_00004432-exon-sc0000044-1491911889:773860..774206 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:773860..775349 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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