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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004441 ID=TCONS_00004441|Name=TCONS_00004441|organism=Clytia hemisphaerica|type=transcript|length=1279bp
CATGAAATACAGCAACAGAATCAACTTTTCTTTGGTGTTCCAAAGTTTTC
TATTCTAGATCATTCAACATTCTAGTAGGACTAGCATCGCAAGACCAATT
CGAGAAAACAGAGCGGGCTCCTTTACGTTGGACAATTTCAAGATTATCAC
ATAAGGTTTGTTTCGATACTGGGTTCCACACTGGAGATGCATAGGACAGG
ATAGGTCTAACATATGTATTGAATGCTTTCGCTTTGATTTTACGTGAACA
ATTCCTCAGGTTCCTTTGAAGAAAAGATCTCTTTTGATTTGCCTTTTTGC
ATATTGTGTCAATATGAGTGTTCCACTTGAGCTTATTGTTCAGGGTTACT
CCAAGGTATTTGGCGTTAGATACTTTCTCAAGCTCTGGATAGAATATGTG
CTTTCTATGGGTTTGGTCCCAATTTGTAATTGGGAGAtgtttgcactttt
gaggatgaAATTCCACATCCCATTGCTGAAGTGCTGTGAGGTCATCTTGT
ATGATGGCATGTCGTTGATGTAAATCAAGAAGAGTAGTGGTCCAAGTACG
GTGCCTTGGGGTACACCAGACAAAACGTTAGCCGTATCTGAGGATTTCCT
GTTTAATAAAACTTGTTGCGTTCTGTTTGATAGGAATGCTTTTATCCATT
TAAGTGTGGTGCCTCCAATAACATAGTGTGATGCCTTTAGACAAATTTTG
AAGTAGTTAACTTTGTCAAATGCCTTGCTAAAGTCCAGTAAGATagagtc
tgtttgtttcttatcATTAAGGTTCCTAGCAAAGTCGTTGACGGTGGTTA
AAAGTTGACTCATACATGAACGTTTTTCTCTGAAACCATGTTGGTAGTCA
CTCAATACATTATTATCATTAAGGTGTGTCATTACATTGCTATAAATAAT
ATATTCCAGACACTTGCAACAAATCGATGCGAGTGAAGCTGGTCGGTAAT
TTTCAGCCTGGTTCTTATCTTTGTTACCCCCTTTGTACACAGGTACAATA
AATGCATGCGACCAGTCTTTGGGAAGGGTTTTAATCGAActccaagattt
tttaaaagattgtgagtgttcgattaagttcgatcaatgggttttggttc
gatcagtttgataaaccaattttgttcgacaagtttgtgctgctccacCA
CcatatattagcttcttttcaaagccaaattcgggaTGTAagtcgggaaa
ttacttcccaTAACgaattacacacttttcctgtatccttttagcgccag
aggcggtttgttggggcgtaaTATTCCGC Run BLAST on NCBI protein sequence of TCONS_00004441-protein >TCONS_00004441-protein ID=TCONS_00004441-protein|Name=TCONS_00004441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MTHLNDNNVLSDYQHGFREKRSCMSQLLTTVNDFARNLNDKKQTDSILLD
FSKAFDKVNYFKICLKASHYVIGGTTLKWIKAFLSNRTQQVLLNRKSSDT
ANVLSGVPQGTVLGPLLFLIYINDMPSYKMTSQHFSNGMWNFILKSANIS
QLQIGTKPIESTYSIQSLRKYLTPNTLE Run BLAST on NCBI transcript from alignment at sc0000044:211138..212416 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004441 ID=TCONS_00004441|Name=TCONS_00004441|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at sc0000044:211138..212416 (Clytia hemisphaerica)
GCGGAATAttacgccccaacaaaccgcctctggcgctaaaaggatacagg
aaaagtgtgtaattcGTTAtgggaagtaatttcccgactTACAtcccgaa
tttggctttgaaaagaagctaatatatgGTGgtggagcagcacaaacttg
tcgaacaaaattggtttatcaaactgatcgaaccaaaacccattgatcga
acttaatcgaacactcacaatcttttaaaaaatcttggagTTCGATTAAA
ACCCTTCCCAAAGACTGGTCGCATGCATTTATTGTACCTGTGTACAAAGG
GGGTAACAAAGATAAGAACCAGGCTGAAAATTACCGACCAGCTTCACTCG
CATCGATTTGTTGCAAGTGTCTGGAATATATTATTTATAGCAATGTAATG
ACACACCTTAATGATAATAATGTATTGAGTGACTACCAACATGGTTTCAG
AGAAAAACGTTCATGTATGAGTCAACTTTTAACCACCGTCAACGACTTTG
CTAGGAACCTTAATgataagaaacaaacagactctATCTTACTGGACTTT
AGCAAGGCATTTGACAAAGTTAACTACTTCAAAATTTGTCTAAAGGCATC
ACACTATGTTATTGGAGGCACCACACTTAAATGGATAAAAGCATTCCTAT
CAAACAGAACGCAACAAGTTTTATTAAACAGGAAATCCTCAGATACGGCT
AACGTTTTGTCTGGTGTACCCCAAGGCACCGTACTTGGACCACTACTCTT
CTTGATTTACATCAACGACATGCCATCATACAAGATGACCTCACAGCACT
TCAGCAATGGGATGTGGAATTtcatcctcaaaagtgcaaacaTCTCCCAA
TTACAAATTGGGACCAAACCCATAGAAAGCACATATTCTATCCAGAGCTT
GAGAAAGTATCTAACGCCAAATACCTTGGAGTAACCCTGAACAATAAGCT
CAAGTGGAACACTCATATTGACACAATATGCAAAAAGGCAAATCAAAAGA
GATCTTTTCTTCAAAGGAACCTGAGGAATTGTTCACGTAAAATCAAAGCG
AAAGCATTCAATACATATGTTAGACCTATCCTGTCCTATGCATCTCCAGT
GTGGAACCCAGTATCGAAACAAACCTTATGTGATAATCTTGAAATTGTCC
AACGTAAAGGAGCCCGCTCTGTTTTCTCGAATTGGTCTTGCGATGCTAGT
CCTACTAGAATGTTGAATGATCTAGAATAGAAAACTTTGGAACACCAAAG
AAAAGTTGATTCTGTTGCTGTATTTCATG Coding sequence (CDS) from alignment at sc0000044:211138..212416 >TCONS_00004441 ID=TCONS_00004441|Name=TCONS_00004441|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000044:211138..212416 (Clytia hemisphaerica)
ATGACACACCTTAATGATAATAATGTATTGAGTGACTACCAACATGGTTT
CAGAGAAAAACGTTCATGTATGAGTCAACTTTTAACCACCGTCAACGACT
TTGCTAGGAACCTTAATgataagaaacaaacagactctATCTTACTGGAC
TTTAGCAAGGCATTTGACAAAGTTAACTACTTCAAAATTTGTCTAAAGGC
ATCACACTATGTTATTGGAGGCACCACACTTAAATGGATAAAAGCATTCC
TATCAAACAGAACGCAACAAGTTTTATTAAACAGGAAATCCTCAGATACG
GCTAACGTTTTGTCTGGTGTACCCCAAGGCACCGTACTTGGACCACTACT
CTTCTTGATTTACATCAACGACATGCCATCATACAAGATGACCTCACAGC
ACTTCAGCAATGGGATGTGGAATTtcatcctcaaaagtgcaaacaTCTCC
CAATTACAAATTGGGACCAAACCCATAGAAAGCACATATTCTATCCAGAG
CTTGAGAAAGTATCTAACGCCAAATACCTTGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004441-exon-sc0000044-1491911889:211138..212416 | TCONS_00004441-exon-sc0000044-1491911889:211138..212416 | Clytia hemisphaerica | exon |
| TCONS_00004441-exon-sc0000044-1510915933:211138..212416 | TCONS_00004441-exon-sc0000044-1510915933:211138..212416 | Clytia hemisphaerica | exon |
| TCONS_00004441-exon-sc0000044-1575043694:211138..212416 | TCONS_00004441-exon-sc0000044-1575043694:211138..212416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:211138..212416 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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