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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004444 ID=TCONS_00004444|Name=TCONS_00004444|organism=Clytia hemisphaerica|type=transcript|length=1004bp
CCCAGACTTCACTACATGCCAAAAAAGACCTCCCACCAAGATTACCACAT
TACCATCACCacaacaaaatatgaaaaaggcTATTTACATCTTTCCGTCG
TCCTCATCATCCATCTCTTCTACTTCTTCTGCTGCCGCCAAACCGTTTTT
TCCACTACCATTGCCACTAAGCCACTCAATTTCCTCTCCGAAAGAAAAAC
CTAAACCATTTCATCAAGCTTTTCAAATTCCAACATCCACCATCACCAAT
GCAACCAAGCCGTCTGCCACCTGCAAATCTCCTACACCGACCGTAACACC
GACAAAGCCACCAAAGAAAAAGATAATGCACGAGTTATCGCCCTATTTAA
AGAAATACTTTCTTGTCACCTTTTCGATACTCAAAAGCAAACACAAGAGC
GAAAGGCTAAATGGCTAACAGTGTCTTCCAAAATGAACGAGCTTTTTCCT
GGTGATGAAATTTATGAAATCAGGACAGTCAAGGACAGATTAAGCAAATC
AttgaaagcattcaaaaagaaaaataatgcagaGCTCAAGGGATCTGGGA
CTGAGGTTGACTACAGCGAGAAAGATAATCTCCTCCAAGATCTCATTGAA
CTTGGAAAGACATCCTTCCACATTAAAGAACAAAGAGACGAAGAGACGAA
AAAGATGAAAGAATCACAACAACAAGGCTTGGAAGTGAGAAAGAGAGCCT
CGGAATCTATGTCAGAGACGCAAGAAAGGTTACAGAAACCAAAAAAGGTT
CGAAAGCAAAGGTCAGATAAAAGGAAGATTGACAGTAAAGGTATTATTGT
TGACTGCATCAAGGAAAAATGGTCTTTCTTCGTCCTTTCGGAGAAGCGAT
ACTATTTCATTTTCTAAAGCATTATGATATTTTATTAGGGTAGAATATTC
AAATCTATTGTAAAGCACCACCTTTCATATATTTTGGGAAAAcattgaag
aaaaacaaaacttaagTATGTAGTACGacatttcttcaaaattttcaagg
tttA Run BLAST on NCBI protein sequence of TCONS_00004444-protein >TCONS_00004444-protein ID=TCONS_00004444-protein|Name=TCONS_00004444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MNELFPGDEIYEIRTVKDRLSKSLKAFKKKNNAELKGSGTEVDYSEKDNL
LQDLIELGKTSFHIKEQRDEETKKMKESQQQGLEVRKRASESMSETQERL
QKPKKVRKQRSDKRKIDSKGIIVDCIKEKWSFFVLSEKRYYFIF Run BLAST on NCBI transcript from alignment at sc0000044:231756..232759 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004444 ID=TCONS_00004444|Name=TCONS_00004444|organism=Clytia hemisphaerica|type=transcript|length=1004bp|location=Sequence derived from alignment at sc0000044:231756..232759 (Clytia hemisphaerica)
TaaaccttgaaaattttgaagaaatgtCGTACTACATActtaagttttgt
ttttcttcaatgTTTTCCCAAAATATATGAAAGGTGGTGCTTTACAATAG
ATTTGAATATTCTACCCTAATAAAATATCATAATGCTTTAGAAAATGAAA
TAGTATCGCTTCTCCGAAAGGACGAAGAAAGACCATTTTTCCTTGATGCA
GTCAACAATAATACCTTTACTGTCAATCTTCCTTTTATCTGACCTTTGCT
TTCGAACCTTTTTTGGTTTCTGTAACCTTTCTTGCGTCTCTGACATAGAT
TCCGAGGCTCTCTTTCTCACTTCCAAGCCTTGTTGTTGTGATTCTTTCAT
CTTTTTCGTCTCTTCGTCTCTTTGTTCTTTAATGTGGAAGGATGTCTTTC
CAAGTTCAATGAGATCTTGGAGGAGATTATCTTTCTCGCTGTAGTCAACC
TCAGTCCCAGATCCCTTGAGCtctgcattatttttctttttgaatgcttt
caaTGATTTGCTTAATCTGTCCTTGACTGTCCTGATTTCATAAATTTCAT
CACCAGGAAAAAGCTCGTTCATTTTGGAAGACACTGTTAGCCATTTAGCC
TTTCGCTCTTGTGTTTGCTTTTGAGTATCGAAAAGGTGACAAGAAAGTAT
TTCTTTAAATAGGGCGATAACTCGTGCATTATCTTTTTCTTTGGTGGCTT
TGTCGGTGTTACGGTCGGTGTAGGAGATTTGCAGGTGGCAGACGGCTTGG
TTGCATTGGTGATGGTGGATGTTGGAATTTGAAAAGCTTGATGAAATGGT
TTAGGTTTTTCTTTCGGAGAGGAAATTGAGTGGCTTAGTGGCAATGGTAG
TGGAAAAAACGGTTTGGCGGCAGCAGAAGAAGTAGAAGAGATGGATGATG
AGGACGACGGAAAGATGTAAATAgcctttttcatattttgttgtGGTGAT
GGTAATGTGGTAATCTTGGTGGGAGGTCTTTTTTGGCATGTAGTGAAGTC
TGGG Coding sequence (CDS) from alignment at sc0000044:231756..232759 >TCONS_00004444 ID=TCONS_00004444|Name=TCONS_00004444|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000044:231756..232759 (Clytia hemisphaerica)
TTAGAAAATGAAATAGTATCGCTTCTCCGAAAGGACGAAGAAAGACCATT
TTTCCTTGATGCAGTCAACAATAATACCTTTACTGTCAATCTTCCTTTTA
TCTGACCTTTGCTTTCGAACCTTTTTTGGTTTCTGTAACCTTTCTTGCGT
CTCTGACATAGATTCCGAGGCTCTCTTTCTCACTTCCAAGCCTTGTTGTT
GTGATTCTTTCATCTTTTTCGTCTCTTCGTCTCTTTGTTCTTTAATGTGG
AAGGATGTCTTTCCAAGTTCAATGAGATCTTGGAGGAGATTATCTTTCTC
GCTGTAGTCAACCTCAGTCCCAGATCCCTTGAGCtctgcattatttttct
ttttgaatgctttcaaTGATTTGCTTAATCTGTCCTTGACTGTCCTGATT
TCATAAATTTCATCACCAGGAAAAAGCTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004444-exon-sc0000044-1491911889:231756..232759 | TCONS_00004444-exon-sc0000044-1491911889:231756..232759 | Clytia hemisphaerica | exon |
| TCONS_00004444-exon-sc0000044-1510915933:231756..232759 | TCONS_00004444-exon-sc0000044-1510915933:231756..232759 | Clytia hemisphaerica | exon |
| TCONS_00004444-exon-sc0000044-1575043694:231756..232759 | TCONS_00004444-exon-sc0000044-1575043694:231756..232759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:231756..232759 . |
Blast
The following BLAST results are available for this feature:
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