TCONS_00004596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004596
Unique NameTCONS_00004596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004596 ID=TCONS_00004596|Name=TCONS_00004596|organism=Clytia hemisphaerica|type=transcript|length=295bp
GGAAAATATTGTTTCGGAAAATGTTTAAAGGTAGTTCTTCTTGTAAATCG
TTGAAAGACAGATCAAGGTGCTTCAGCTCTGTatacgtcgaaaattggtc
ttCTGCAATACGAGTGAAATAGTTTCTACTCAAATCAAGTTTCcagattt
tccttgaaaaatcttTAGGTATTTTAGTGAGTTGGTTTCCACTAAGTTGG
ACTTGTTCTATAAGAAGTGATTTCTCCATTACGTTGCTTTCGATGGTTTG
AATTTTGTTATGTGAAAGATCTGCGTACGTGAGCCAGTTGAAACC
Run BLAST on NCBI

transcript from alignment at sc0000045:632545..632839

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004596 ID=TCONS_00004596|Name=TCONS_00004596|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0000045:632545..632839 (Clytia hemisphaerica)
GGTTTCAACTGGCTCACGTACGCAGATCTTTCACATAACAAAATTCAAAC
CATCGAAAGCAACGTAATGGAGAAATCACTTCTTATAGAACAAGTCCAAC
TTAGTGGAAACCAACTCACTAAAATACCTAaagatttttcaaggaaaatc
tgGAAACTTGATTTGAGTAGAAACTATTTCACTCGTATTGCAGaagacca
attttcgacgtatACAGAGCTGAAGCACCTTGATCTGTCTTTCAACGATT
TACAAGAAGAACTACCTTTAAACATTTTCCGAAACAATATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002590XLOC_002590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004596-exon-sc0000045-1491911889:632545..632839TCONS_00004596-exon-sc0000045-1491911889:632545..632839Clytia hemisphaericaexon
TCONS_00004596-exon-sc0000045-1510915933:632545..632839TCONS_00004596-exon-sc0000045-1510915933:632545..632839Clytia hemisphaericaexon
TCONS_00004596-exon-sc0000045-1575043694:632545..632839TCONS_00004596-exon-sc0000045-1575043694:632545..632839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:632545..632839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.465971	0	2.21996	3.50848	1.05821	2.4767	1.0404	3.43654	5.42033	1.37043	13.4115	4.26367	2.33688	10.5329	0.308944	0.316658	0	1.83116	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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