TCONS_00004605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004605
Unique NameTCONS_00004605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004605 ID=TCONS_00004605|Name=TCONS_00004605|organism=Clytia hemisphaerica|type=transcript|length=348bp
CGGTAGTGATGCGGATATTTGTGTCTTTGAATTCTTGTTGGGCTTGTTCT
AGGTGTTGTGGTTTGACGATGATCCAAGTTTTATCTGCACGCTGGAAGTA
GCCATATTTGGGGCCCCAGCGAAGTATCGTATCCCACATTCGTTTGAGCC
CAAGAATCGTACCGCCTCCGAATATGTCGTCGGCATATCCTGCTGCTCGG
GTGTTGGTGTTACGTATCTCGCTAGCGGCGAAGAGAATCAAAGGGATTGT
TGCGATAGCGTACAGCAGGCCGGCAATGGGATCACCCTGCGTGGTGCCTT
CGGATGAACGGATTTCGACACCACCGAGGACGAAGAGTCTGGAGGGCG
Run BLAST on NCBI

protein sequence of TCONS_00004605-protein

>TCONS_00004605-protein ID=TCONS_00004605-protein|Name=TCONS_00004605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
PSRLFVLGGVEIRSSEGTTQGDPIAGLLYAIATIPLILFAASEIRNTNTR
AAGYADDIFGGGTILGLKRMWDTILRWGPKYGYFQRADKTWIIVKPQHLE
QAQQEFKDTNIRITT
Run BLAST on NCBI

transcript from alignment at sc0000045:832901..833248

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004605 ID=TCONS_00004605|Name=TCONS_00004605|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0000045:832901..833248 (Clytia hemisphaerica)
CGCCCTCCAGACTCTTCGTCCTCGGTGGTGTCGAAATCCGTTCATCCGAA
GGCACCACGCAGGGTGATCCCATTGCCGGCCTGCTGTACGCTATCGCAAC
AATCCCTTTGATTCTCTTCGCCGCTAGCGAGATACGTAACACCAACACCC
GAGCAGCAGGATATGCCGACGACATATTCGGAGGCGGTACGATTCTTGGG
CTCAAACGAATGTGGGATACGATACTTCGCTGGGGCCCCAAATATGGCTA
CTTCCAGCGTGCAGATAAAACTTGGATCATCGTCAAACCACAACACCTAG
AACAAGCCCAACAAGAATTCAAAGACACAAATATCCGCATCACTACCG

Coding sequence (CDS) from alignment at sc0000045:832901..833248

>TCONS_00004605 ID=TCONS_00004605|Name=TCONS_00004605|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000045:832901..833248 (Clytia hemisphaerica)
CCCTCCAGACTCTTCGTCCTCGGTGGTGTCGAAATCCGTTCATCCGAAGG
CACCACGCAGGGTGATCCCATTGCCGGCCTGCTGTACGCTATCGCAACAA
TCCCTTTGATTCTCTTCGCCGCTAGCGAGATACGTAACACCAACACCCGA
GCAGCAGGATATGCCGACGACATATTCGGAGGCGGTACGATTCTTGGGCT
CAAACGAATGTGGGATACGATACTTCGCTGGGGCCCCAAATATGGCTACT
TCCAGCGTGCAGATAAAACTTGGATCATCGTCAAACCACAACACCTAGAA
CAAGCCCAACAAGAATTCAAAGACACAAATATCCGCATCACTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002599XLOC_002599Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004605-proteinTCONS_00004605-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004605-exon-sc0000045-1491911889:832901..833248TCONS_00004605-exon-sc0000045-1491911889:832901..833248Clytia hemisphaericaexon
TCONS_00004605-exon-sc0000045-1510915933:832901..833248TCONS_00004605-exon-sc0000045-1510915933:832901..833248Clytia hemisphaericaexon
TCONS_00004605-exon-sc0000045-1575043694:832901..833248TCONS_00004605-exon-sc0000045-1575043694:832901..833248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:832901..833248 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27618	0.497789	3.46788	2.26185	1.37679	0.543981	0.984435	0.921616	0.860327	0.532827	0.775762	1.1899	0.678995	2.29172	0.869585	2.02193	0.95802	0.98194	0.271321	1.13567	0.740327	0.361106	0	0.532118	2.46631	0.733708	1.39991	1.12052	0	0.288629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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