TCONS_00004614 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004614
Unique Name	TCONS_00004614
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3437

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000047:46090..55679+

transcript sequence

>TCONS_00004614 ID=TCONS_00004614|Name=TCONS_00004614|organism=Clytia hemisphaerica|type=transcript|length=3437bp
CGAAAAGTCAAACGGTCACTTTAAAGCAATATCTGTTTTGTGTTCAATTT
TGATCGATACATATATACAATTTCAAGCAAATTTCTCAAGGTTGCACTTT
GAAGAATTCGATTTAGTtgcaaaatcaaatatttttatttgccGGTCAAT
agaaaaccttatttttatCATAACATAAATTGGCACACTTCAACTTAAGT
CAGAAAAGgaaattttCGTTCTGTCAGTATCCATTCTTGTTGAGTTTACG
AGCCAAACGATTTATCATGCAGAAAGATTCCGAAACAAAAATGTTACTGG
AAGCCAGGCAAAGTTTGGTTAACAAAGTACGACAGAAACAAAAGCCAAGC
ATGGGAATGCTATTTCTCAATCTGGATATTCGACGAAATAATCTGCTGGA
AGATTCTTTGAAAGAGatttcaAAGAAACGTGCAGACTTAAAGAAGAAAT
TACGAGTGATCTTCAAAGGGGAGCCTGGGATCGACTTGGGCGGAGTCAGC
AAAGAATGGTTCTTCTTGTTGATtcaaaaattcttcaaagaagaTTATGG
CATGTTTAAATACAGTGAGAAACGACATAATTGGTGGTTTACTGCTTCAA
GCAAAGATAGCTTCAAAGAATATAATTTATGTGGAGTGCTTCTTGGTTTA
GCCATATACAACGGAATCAATCTAGATATCCGGTTTCCGCCGATTGTTTA
CAAGAAATTATTGAGTCCCGCAATTGTTCCATATAACAACCCGCACGCCT
ACGTTGGAGTGGTACCAGCTGGGGTGGACGACCTGAAACAAGTTTATCCG
GAAGTAGCGCAAGGTTTGAGAGATTTGTTGGAATATGATGGAGATGTGGA
AGATGATCTTTGTCAAACTTTTATGATTTCATTCACTGAGAATGGGCAGA
CGATGAATCGACAGTTGAAAACCAATGGAGATACAATCCCTGTCACCAAT
CTCAATAGACAAGAATATGTGAACCTTTATTGCGATTATTTGGTCAACAA
ATGTATTTATCAACAATTCTACTCATTTTATCATGGATTTCATAGTGTGT
GTGCTTCTAATGCTCTGCTActGTTACGTCCAGAAGAAGTAGAAACGCTT
GTTATTGGTAACCCTAATTTCAACATCAAAGACTTGGAGAAAATCACTAA
GTACGATGGTTTCAAAAGAACAGATGCTACAATCAGATATTTCTGGGAGA
CAGTTCACGAATTTGACCAGAAGCTTCAACGTANACATTACAGATATTTC
TGGGAGACAGTTCACGAATTTGATCAGAAGCTTCAACGTAAATTGTTGTT
CTTTTCGACGGGAAGTGACCGGATACCTGTCGGTGGtttcaaagaaatga
aattcaaaatcaCCAGAATCGCTGGTCAAAACGCTATCAATATGTTACCG
ATGGCTCATACATGCTTCAATCAATTGTGCCTACCATCTTATAAAAGTCG
AAAAGATATTCACGAGAAACTTCTAATCGCGATAAGCAATGCTGAAGGAT
TCGGATTAGAGTAAAAAGGTGTCTTGGGTATTGATTTACGATACTGACGC
AATTCGCAATTGAGTGTACGTTCCAAAATAGAACCAAGCTCAGACTTTAT
AGTTGTGGTCCTCTTCGAAAAGAAATAAAGCTATTCTATTGGTCAAAAAT
GTTTTGTGTCATAAAATTatccaatggaattgcttcattttgacATGGAC
CTGTACCAAACATAGAAAGAGAGTTGCTGAAATGAAAACGAACAGATTGC
CGAGATATGCATattaaattttgaccaattGTACTTTGCCATCAATATTA
GCAGTAGACTTACTTTTGAGAATtcttaattcatgatattcatgacgtaa
tattttatacggaagcacctaAAGTAGAGCGGCCGCATGCCACtagtatt
ttttgtttaaattcaaattaccaaaattagtggcaaacaccCGATCTTTT
TTTGGTTCTTCCATATAAAACATCACGTCATGATTATCATAAATTTCAGT
CATGCGAAAATACAAAAACGGGTTGTCACGAAATGCTATTTATTTTGAGT
GCAATTATTTTATGGTGGAGTTATGAAGGGAAGAGCAGAAAACGCTTTAG
AATCACAAATGTCAAACTGTTTGAGTATTTTGTTCTTTTACTAGATTCCT
CATAGCGTTCGTTTTCCCCGAAATTCCTTCCTATTTTCCACTCCTACTTA
TCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTTCTC
TGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgttaaaa
agaaagttgattgtcgaagaaaaatagatataaaaaaaaatatNCTACTT
ATCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTTCA
CTGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgttaaa
aagaaagttgattgtggaagaaaaatagatatagaaaaaaaaaattttaa
tcacATATCGACGCGATGATAATTTAAAGATACTTCAAAGTTAATTAGAT
TCCCAATTGGCGACTAATTGTTAACCTGTACTCGATAGAGTCTTTTATGT
ATGAATTTCTAGCCCTGTCGGACGCCCAACGACCATGCTTTGAAATCAGT
CTTTCGTTGACGTTGTTTTGAGCGGCAGCAGATGCACCACCTGATCTAAG
ACTATGTAAACCAAAATTGCCTTTAATTTCAGCCTCCTCTATTTTCtctt
taaatatttcccttGCTCTCGTGTAAGAAATTCCTTCGGATAAATGGATC
TTGTgaccttttttgattttaatcaaTCTTGGAACTAAAAAACATTCAGG
GTTGGATGTTAAGGATACGTTTGAAAGCGATAAAAATCTTTCTGCTAAGT
TCACggggcaaaatttggtgttctCATTTCTTGAAACGTAAATTGTATTA
CCATCACGATGCTGATCACTTTTGGAGATTTCTAGAAAAATTTCGAGGTG
GGCTGATTTTATTGTTACGTCCTTCAACTGTACGGTTAATAGTTCATCTA
TTCTGCAGAAGCCAAAAAAGCCCAGGGAGCAAATCAATAGAAAACGTAAG
CTCGTTAATGATTCTGAATCGAAAGTCTTAATTAAGTGTTTGAGGATTTC
TGGCGTTATAGGTTCTTTAGGATTCTTCGGCTTCTTTTCACAAAGTCGTA
ACGTACCTTCGTATGTCATACTCACGAATGGGTGGTCGGTAGGAGAGTAT
AGTCCGTTGACGTGAAGACCCCATCTGATGCCGTAGAAGGCTGTTGTTAA
TGTACCACTCTTCTTCGAAGTTTTCAATACGAACTTCAGGTAGATTGCTA
CGTAAAAGGGGTTTGCTGGAAATGGCATGATTTCTTCTTTATCTTTACAC
CAATCCAACCAGTTTGACCATGCTCGTTGGTATTTCN

Run BLAST on NCBI

transcript from alignment at sc0000047:46090..55679+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004614 ID=TCONS_00004614|Name=TCONS_00004614|organism=Clytia hemisphaerica|type=transcript|length=9590bp|location=Sequence derived from alignment at sc0000047:46090..55679+ (Clytia hemisphaerica)
CGAAAAGTCAAACGGTCACTTTAAAGCAATATCTGTTTTGTGTTCAATTT
TGATCGATACATATATACAATTTCAAGCAAATTTCTCAAGGTTGCACTTT
GAAGAATTCGATTTAGTtgcaaaatcaaatatttttatttgccGGTCAAT
agaaaaccttatttttatCATAACATAAATTGGCACACTTCAACTTAAGT
CAGAAAAGGTATTTTTAAGTTAAGATACTAATTTCACTTTCATATTTATG
TAAATGGGGCCAATCCGTTTAAATTCATAAGTGAAAAAGATATGAAAGGA
ATTTTATAGCGGTAAATAATCAGGAGCGGTAAagagttttcttttcaaac
tcGTTTTCTGTGACATTTCTCGCTTTTTAACGATTCTAGAACTTACTTTT
TcttcttaatattttatttttccaggaaattttCGTTCTGTCAGTATCCA
TTCTTGTTGAGTTTACGAGCCAAACGATTTATCATGCAGAAAGATTCCGA
AACAAAAATGTTACTGGAAGCCAGGGTAAGGAAAATGTTGGTCTTTTAAC
ACCCCTTTTCGCAGACAGAACTGGTGGgagcacccccccccccccccccc
ccccccaaaaattttttcaaaattttaattttttttaaattttttttggg
gggagggggggggggggccccccccccccctcccctgCCACCAAAATATT
GTTCAAAGTGGATAATTATATTCCGATGTTTCTCCTCGATCAAAATAATT
GAATAAACAAATCCTCGCtctaaaattttgtgtttttttccatccccact
gaattttccgaattaaaaacaatagaattcaaatccccagccataaaaaa
cattgatttgTCAATAGTATTACCTTTGACCATTTAACGTTTTGATTGAG
TTTCTGGTGAATACAAAATAAATATGAATTCTTTTGTGCGTTCTCTTTGA
TTGCAAGTTAATGTTCTCGTGATGTTCTGATGTTTTTAGTAATCCTTCTA
TCTCAGTCGGATACAGAGACCTCTATACTTCATCAAAAGATGAGCAGCcc
tctctttcatttttcaagattattttattttatctcaCTTTACTTATTTT
CACAGCAAAGTTTGGTTAACAAAGTACGACAGAAACAAAAGCCAAGCATG
GGAATGCTATTTCTCAATCTGGATATTCGACGAAATAATCTGCTGGAAGA
TTCTTTGAAAGAGGTATAATAATGACgaataatttttgatttcttgaGCC
TCTTGTATTTGAACATCTAAAATTCTAGAAGAATTGCTAAGTTAGCAGAT
CCGaaacaactttttgtttttaaaagattttctcgCGATGTTTCTCATAG
CAAGATGCTCTTTGAGCTATCGATATATCGGGCTATATTGATAGGAAAAA
caatttccccaattttttcaCCAACATATTNGCTATCGATATATCGGGCT
ATATTTCGGGACAATTTCCCCATTTCTTTCACCAACATATCGCACCTTCT
CCCCCATTGactcttacagtgcactttcagAAGGCTGGGAACCATCTAAT
AAGGACCGTATCTCAGATAGGTCACATTGAGTATCCCCTGGTGGGAAttt
actgaaaaagaaaagtatattgTAATCAAgtatttttctttagatttcaA
AGAAACGTGCAGACTTAAAGAAGAAATTACGAGTGATCTTCAAAGGGGAG
CCTGGGATCGACTTGGGCGGAGTCAGCAAAGAATGGTTCTTCTTGTTGAT
tcaaaaattcttcaaagaagaTTATGGTAGGTTTTTGAGCTACAAGGTCC
GTAAGAAATGTATCAAACAACCTATTTTATGGCTTTTTCAGCAACCGTAT
TCCCTGAAGTTTTTAACCTACATGCTAGtccaaaacattttgaaaacccT
ATAAATGAGTACAAGGCAGGGCCCACcaccacttttttgcaaagtaaaaa
tttttggttgcgcctccttagactctatattcattgcccccccccccccc
ccccttttttttaaaaaaaaaatttttttcttttcttttctatctctttt
ttttttttcccccccccccccccccactttcaatttcatggcgTGGGCCC
TGCAAGGtgcttttcaaaatttgaagtattAAAACTGCTCTGAAGTTGAT
TTTGATAAACTCTTTACAACAGTTGACCTATTCCAATGAAAACATGAAAG
AATGAAACATATTATTCTTCGTTTCAGGCATGTTTAAATACAGTGAGAAA
CGACATAATTGGTGGTTTACTGCTTCAAGCAAAGATAGCTTCAAAGAATA
TAATTTATGTGGAGTGGTATCCTTTTCAATCGAATTGTGTTTTTAAGTAT
GATTTTTGACGAACTTAGCTTTTCAATGAACTATGCTATGTAATACTTTC
TATTTCCTCACCAAAAGAGGTTTTGGTCAATGTATGAATAACTTTTTCTG
GTGTGGTAATGCGTAAATGGAAAAATTGCGTCAACATGACAAATTTCCCG
ATTTGGATGAGTAAATTGTcattctcgtgtctccaccccatttttcttta
taccaataaaagtgaaatccacaaaattttgaataacattTGTGTGTCTG
TCGCTTTTGTCCCCGGGACAATGGagttcgaatcaattttgctccattat
cccagggacaaaatcagcgtgtcttttgggtactTTTTGGGTACAagaaa
agaaaccatgggacacgaactttttttcttgtgttggtgggatggagcat
gttgcattgcaccaacgcgaaaaaaaattctcgtgtccccaagccttaaa
cgattcaattttttttgcaaaactaTTCTTTCCTTAACTCTGAGCCATCC
GTAATACAGCTTCTTGGTTTAGCCATATACAACGGAATCAATCTAGATAT
CCGGTTTCCGCCGATTGTTTACAAGAAATTATTGAGTCCCGCAATTGTTC
CATATAACAACCCGCACGCCTACGTTGGAGTGGTACCAGCTGGGGTGGAC
GACCTGAAACAAGTTTATCCGGTAAGTTAACATAAATCAAAGTTAAAAGC
TTTTCCGTTTCtgcgaaatatataaaaaagctttttcgTATCAAAATTCT
GCTGATCCAGCAAAATTTCACAAGTATTTAGTTTGTTGTGTTAAATCCAT
CCTCCGTCGCAGACGTTTCCGTTGCTaagttattttctcttttacgcAAA
ATGTGTGAACCAGGGTGTTTTATATATACAGTCTAAGTACGACAGATCTC
ATGGAACTACAAGGTTTCATTGATTTACACTAATTGATCTGAATTCTGAT
TTTAATGAGTCGATTCCGAACCTTTGAATTTATGCAATGAAGTATCTATA
ATTTAAGCAATTTGGTAACTGGTAACGCGAGTTTTTCGTGTTATGGAGCC
TTGTTTACAGAGCCTATAGAGAATCAGAAAACTTAAGAGGCTCAACTAAA
CAGGGTTTTTTGGCATTATTTTTCTACTGTAGGAAGTAGCGCAAGGTTTG
AGAGATTTGTTGGAATATGATGGAGATGTGGAAGATGATCTTTGTCAAAC
TTTTATGGTGAGTTTGGAAGTTATTCATTCATTTTTCTCGTTACCTTTCA
ATTAAGAATTCGAGAGCGTGCACTAAGTGTTTTGGAACGAAgttgaagaa
atgaaaaagaagagaaCTTTTATCGTTGACTGCTTGATACTTCATTTTTA
GTGCTGAAGTTCCTTGAATCCAGTTATGTAATTACTTTTCGCATAGAATT
ATTGTATCGAAAGCTAAGACTTTAGAGAGTTTCCCGTTAAAGTGAAATAA
AATGGGAGAAAACAGAGTTTTCCAATTCAAATGCACGAGGTATCTTCGAG
CTCTTCTAGGGGCTGTAATTTTCGATGCAAGAGAATTTCGAGGCATATAG
CTGAAATAAAGGCTTCGAAGTACCTTTGTAGtaaaaacgaatttttcttC
TAATTCTTATACTAATTAGAAACTCTTCTTCTCAGTTTCAaaagaatatt
aaaaaaatattatcataTTTCTTGAATCCACTCGACTGTTCCCATAGATT
TCATTCACTGAGAATGGGCAGACGATGAATCGACAGTTGAAAACCAATGG
AGATACAATCCCTGTCACCAATCTCAATAGACAAGGTGCTTTTTTCTTAC
TCCccttaaaggccggtctccactttcgtgcgaaatgggcgacagttttt
ttctcaaccttttttgcctaaagaaaAGATTATGTCATAAAAGAGTTTCG
GGCGAACAAAAAacaagttgaaggaagttcaacttttttcaaccgttacg
tcaattttgaccaatggaattgattaatttttcaaccgactaataacctt
acaaaaacgttaacaagttttcgctcatttcgTGCGAAAGTAGAGACTGG
TCTTTAGCTTAATGGAGAAAATTAGTCAAGAGAAAAGTGGCGAAATTTCC
TGGCGAAAGCTCTTTCTCTGTTGTGACAAAAATTTACACAAACGTGACAA
ATTCAGACATTTTAACCTAAACTTTGTTTTACTATCTCGCGAATACAGTT
ATTTGTACAAAGATGGTACATGCTAAACTTTGATGCTTTATGACGGATGG
TCATTTTGACACTAAATTTTCCCGCCGCACTGCCAACTATTCGCACTCTA
GCTCACGAAGTTGTATCGTTCCAGTTTAGGATTGATTCTTACAATTTATT
TTCCAGAATATGTGAACCTTTATTGCGATTATTTGGTCAACAAATGTATT
TATCAACAATTCTACTCATTTTATCATGGATTTCATAGTGTGTGTGCTTC
TAATGCTCTGCTAGTAAGTCGAACATAAATATCTGAATTTAAGTGGTCTA
TTAGCCGTTTATGCAAGTCGAAATTAAATAGAATCTATAAGGTTTTAGTG
CAAGTCGAAAATGAATCGTCATTGCTGCAAAACAGGAGTCCCGTCCCTTC
CCATGTTTTGTTCAGCTTATAGATATCCGGCTGACCCGTGAAATAATCGA
AAGTTTAATAGCATCAGATTACAGACTGGGATATCCACGTTAGATGTTGC
ATCTATTGATCTTTAAAACATCCAGAACCTTCTCACTTTTATGCAAAGTA
GACTTTACCTTCCTGTCATTACCAATTCCGATAGCCCTGCTGGTTAAACT
CTGCTTaagaaaaataacgaagattTGTCAACCACTATTAGAGACTTTTC
GTTCccttatttcatttttcagctGTTACGTCCAGAAGAAGTAGAAACGC
TTGTTATTGGTAACCCTAATTTCAACATCAAAGACTTGGAGAAAATCACT
AAGTACGATGGTTTCAAAAGAACAGATGCTACAATCAGGTAATCACATAG
CCCATGCCCAGaccttttgtttttttatgatattGATAATAACACAGACA
GATACAAAGTAAAAGTTCACAGTACAAGTATATAATAATCCGTAGTTAAG
GAATGTCCATAACCTTATTAGGCGTGACGCGCACCGGTTCCCATCGTTTT
TTGAAAGTCGTGTATAGCCGTCTGTTTGACGTGTTCTTTCCACGGATTTT
TTAACTTAAATATCCATGTTTTGCCGATATCTCGAGTTagctttattcaa
aatttttggcaCAGCACTTTGCGGAACCCTCGAGGGAGCCACCCTCGACT
GCGGTTGTAAAATTTCTTACTTACCAACAACTAATAAACATTTTCTCAAC
ATTACAGATATTTCTGGGAGACAGTTCACGAATTTGACCAGAAGCTTCAA
CGTANACATTACAGATATTTCTGGGAGACAGTTCACGAATTTGATCAGAA
GCTTCAACGTAAATTGTTGTTCTTTTCGACGGGAAGTGACCGGATACCTG
TCGGTGGtttcaaagaaatgaaattcaaaatcaCCAGAATCGCTGGTCAA
AACGCTATCAATATGTAAGGAGAActtatgatattcatgacgtaatgttt
cctAGGAGAATTCAAAATTGTTCCCTGCGTAATGTCGGCTTTTCTTACTG
ATAACGCCGCCAGGTAAtggaccttatcggagttttttatttttctaaaa
cagcaatgagtccctcgaggaattcctaagagatttctattgtaataccc
ccgaaacaatccttcaatgcatcgcttttttagaaaattcgaaaactccg
ataagatctattcgCTGGAgtccatcagtaacgtaaataaaaccAAGGAT
atacggggacgaggttgaggAGAATTTAGATGATAAATCTATATTCTTTC
TCCTTGATATTCAATAATCACACACATTTTACTTCATAAAATActaacta
gcaagtagctgtcactaagaatgccccgcagagcttcTTTTCGAAATATC
CCTAATGAGCAAAATaacgcatgtgtagattttaaattcgttttatcgat
aaaattttagtcggaggaagaaagcttggtttcaactttacttttgagat
gacatgcgatagacggtcgctcacatctcaaaaagagaagttatcgctca
catgttatcacagtgGAAATACCAAagattctgaaattgatttgattctt
aaaaagtagacacttataataaaaGTAAATGTGCTCatatttttcgccat
cctttctaataactaattaccgaaagatatattgccttcaatcaagagtt
attgatttgattcttataaagtacatgcttgtaataaaaataaatatgct
catattttttgccattctttgtttactttctaataactaattaccgaaag
gcatattgccttcaatcaagtgttattgatttgattcttataaagtagat
gcttataataaaaatcaatatgctcatctttttcgccatcctttgtttac
tttgtaagaactaattaccgaaaggcatattgtcTACAATCAagatttat
tgatttgattcttataaagtagatgcttataataaaaataaatatgctca
tctttttcgccatcctttgtttactttgtaagaactaattaccgaaaggc
acaatcaagagttatcgatttgattcttataaagtagatgcttataataa
aaataaatatgctcatctttttcgccatcctttgtttactttgtaagaac
taattaccgaaaggcacaatcaagagttatcgatttgattcttataaagt
agatgcttataataaaaataaatatgctcatgtTGTTGTTCACGTACCTT
GTTTACTTTCttataactaattaccgaaagatatattgccttcaatcaag
agttattgatttgattcttataaagtaccaAGTAGCAACAAAAGAGATAT
AATATTAAGGTGcgcgcgaacattttttaaccgcggcagcccgctcagaa
tcggaagaaacaacatgaatctgaacatgaatatttttctggcgagcaac
tccgctacgtgaagcaacaaaagcccctgcggggcaaaaaTAATAAACTT
GAGAAAAGTTTATAAATGTTTAACCTGtacatttaaaatcaaaaagtgaa
agCGAAACAAGGGCATCCACTGAAGtatattattttcttatttcagGTTA
CCGATGGCTCATACATGCTTCAATCAATTGTGCCTACCATCTTATAAAAG
TCGAAAAGATATTCACGAGAAACTTCTAATCGCGATAAGCAATGCTGAAG
GATTCGGATTAGAGTAAAAAGGTGTCTTGGGTATTGATTTACGATACTGA
CGCAATTCGCAATTGAGTGTACGTTCCAAAATAGAACCAAGCTCAGACTT
TATAGTTGTGGTCCTCTTCGAAAAGAAATAAAGCTATTCTATTGGTCAAA
AATGTTTTGTGTCATAAAATTatccaatggaattgcttcattttgacATG
GACCTGTACCAAACATAGAAAGAGAGTTGCTGAAATGAAAACGAACAGAT
TGCCGAGATATGCATattaaattttgaccaattGTACTTTGCCATCAATA
TTAGCAGTAGACTTACTTTTGAGAATtcttaattcatgatattcatgacg
taatattttatacggaagcacctaAAGTAGAGCGGCCGCATGCCACtagt
attttttgtttaaattcaaattaccaaaattagtggcaaacaccCGATCT
TTTTTTGGTTCTTCCATATAAAACATCACGTCATGATTATCATAAATTTC
AGTCATGCGAAAATACAAAAACGGGTTGTCACGAAATGCTATTTATTTTG
AGTGCAATTATTTTATGGTGGAGTTATGAAGGGAAGAGCAGAAAACGCTT
TAGAATCACAAATGTCAAACTGTTTGAGTATTTTGTTCTTTTACTAGATT
CCTCATAGCGTTCGTTTTCCCCGAAATTCCTTCCTATTTTCCACTCCTAC
TTATCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTTT
CTCTGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgtta
aaaagaaagttgattgtcgaagaaaaatagatataaaaaaaaatatNCTA
CTTATCTTACTCAAAGGGTTCAAAACACATTGAAATACACATATTTGTTT
TCACTGAGCATTTGGTCTTTGGCTGGCGTGAACAGTGTATCTCGAGGgtt
aaaaagaaagttgattgtggaagaaaaatagatatagaaaaaaaaaattt
taatcacATATCGACGCGATGATAATTTAAAGATACTTCAAAGTTAATTA
GATTCCCAATTGGCGACTAATTGTTAACCTGTACTCGATAGAGTCTTTTA
TGTATGAATTTCTAGCCCTGTCGGACGCCCAACGACCATGCTTTGAAATC
AGTCTTTCGTTGACGTTGTTTTGAGCGGCAGCAGATGCACCACCTGATCT
AAGACTATGTAAACCAAAATTGCCTTTAATTTCAGCCTCCTCTATTTTCt
ctttaaatatttcccttGCTCTCGTGTAAGAAATTCCTTCGGATAAATGG
ATCTTGTgaccttttttgattttaatcaaTCTTGGAACTAAAAAACATTC
AGGGTTGGATGTTAAGGATACGTTTGAAAGCGATAAAAATCTTTCTGCTA
AGTTCACggggcaaaatttggtgttctCATTTCTTGAAACGTAAATTGTA
TTACCATCACGATGCTGATCACTTTTGGAGATTTCTAGAAAAATTTCGAG
GTGGGCTGATTTTATTGTTACGTCCTTCAACTGTACGGTTAATAGTTCAT
CTATTCTGCAGAAGCCAAAAAAGCCCAGGGAGCAAATCAATAGAAAACGT
AAGCTCGTTAATGATTCTGAATCGAAAGTCTTAATTAAGTGTTTGAGGAT
TTCTGGCGTTATAGGTTCTTTAGGATTCTTCGGCTTCTTTTCACAAAGTC
GTAACGTACCTTCGTATGTCATACTCACGAATGGGTGGTCGGTAGGAGAG
TATAGTCCGTTGACGTGAAGACCCCATCTGATGCCGTAGAAGGCTGTTGT
TAATGTACCACTCTTCTTCGAAGTTTTCAATACGAACTTCAGGTAGATTG
CTACGTAAAAGGGGTTTGCTGGAAATGGCATGATTTCTTCTTTATCTTTA
CACCAATCCAACCAGTTTGACCATGCTCGTTGGTATTTCN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002601	XLOC_002601	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000047	supercontig	sc0000047:46090..55679 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.72548	9.03221	1.55329	0.386731	0.921952	0.823301	0	0	0	0	0	0	0.000135503	0	0	0	0.912463	0.000556509	0	0	0	0	8.20498	6.62984	0	0	0	0.37458	5.64013	6.7018

Blast

[Close]

BLAST of TCONS_00004614 vs. Swiss-Prot (Human)
Match: HECD2 (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 491.886 bits (1265), Expect = 2.044e-157
Identity = 234/440 (53.18%), Postives = 317/440 (72.05%), Query Frame = 3

Query:  192 NLSQKRKFSFCQYPFLLSLRAKRFIMQKDSETKMLLEARQSLVNKVRQKQKPSMGMLFLNLDIRRNNLLEDSLKEISKKRADLKKKLRVIFKGEPGIDLGGVSKEWFFLLIQKFFKEDYGMFKYSEKRHNWWFTASSKDSFKEYNLCGVLLGLAIYNGINLDIRFPPIVYKKLLSPAIVPYNNPHAYVGVVPAGVDDLKQVYPEVAQGLRDLLEYDGDVEDDLCQTFMISFTENGQTMNRQLKTNGDTIPVTNLNRQEYVNLYCDYLVNKCIYQQFYSFYHGFHSVCASNALLLLRPEEVETLVIGNPNFNIKDLEKITKYDGFKRTDATIRYFWETVHEFDQKLQRXHYRYFWETVHEFDQKLQRKLLFFSTGSDRIPVGGFKEMKFKITRIAGQNAINMLPMAHTCFNQLCLPSYKSRKDIHEKLLIAISNAEGFGLE 1511
            N     +FSFCQYPF++S+ AK+ I+Q+DSE +M+  ARQSLV+KV ++Q+P M +LFLN+ +RR +L+ DSL E+++KRADLKKKL+V F GE G+D+GG++KEWF LLI++ F  DYGMF Y +  H  WF++   D++ E+ L G+L+GLA+YN I LDIRFPP  YKKLLSP I+P +  +  VG+    VDDL Q+ PE+A GL +LL ++G+VE+D   TF +   E G   +  LK  GD I VTN NR+EYV LY D+L+NK IY+QF +FY+GFHSVCASNAL+LLRPEEVE LV G+P+ ++  L++ T+YDG+ +TD TI+Y                   FW+ V  F   LQ+KLL F+TGSDR+PVGG  ++ FKI++   + + N LP+AHTCFNQLCLP YKS+KD+ +KL+I ISN+EGFGLE
Sbjct:  359 NFGNSHRFSFCQYPFVISVAAKKIIIQRDSEQQMINIARQSLVDKVSRRQRPDMNILFLNMKVRRTHLVSDSLDELTRKRADLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSHCHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQ-NIPVGICNVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKY-------------------FWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKISK--NETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGLE 776

The following BLAST results are available for this feature:

BLAST of TCONS_00004614 vs. Swiss-Prot (Human)

BLAST of TCONS_00004614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HECD2	2.044e-157	53.18	Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom...	[more]

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TCONS_00004614 (transcript) - C. hemisphaerica