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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004620 ID=TCONS_00004620|Name=TCONS_00004620|organism=Clytia hemisphaerica|type=transcript|length=1798bp
TTTCCATCCTCATAAAAACAACAGATACCCCCCTTTCGCCCTGACTTGCA
CTGGTGTTAATTGTAAGCCCCAAGACTTGAAACCACTTTTTTTGTACAGG
TATATAAAGAGGAAATACATTTTTAAAGGGAAATGTCCTTTTCAGCTAGA
ATTAGTCCCTAAAATAGATTCTTCAAAATCAATGTTGAAATGGAATCAGA
AGAGGATATTGATTTCAATCAAAATGTTCTTGATCTGTGTGGAAATTGTC
ATGAAAAATGTGAAATGAAATGTGGCAATTGTAATGTAACCAGTTATTGT
TCAAGATTATGTCAAAAACTTGATTGGAAGTATCACCAACGTTTCATGGG
ATGTACAAGCACCAAAAAGACTTCAAATGAAGGGGCAGCCTCATCAAGTG
AACAATCCAACCAATACCCGATTCTTTTAAATGAAAGGAATAAGATTAAA
TATGGTGAATTGTTGAATGCACAGGTTGCACTTACGCATGCTTTTCTTGG
AGCAGATTTGGTATACCAGGCTGATGATGACCACATAGAAATGTTGATGG
AGCAACGTCATAAAACGTTTCAAAACGCTGGTCTCCCTATCACAATACCG
CACATATTTGAAGGAATATTAGACATCAAAATATTTCGTACTTATGAAGG
TGATGTATATTTTCATAACACGTGTTATGGCTTGGGAAGTGATATATCAG
GAGGACATTTACCGTCACAGAACCCCATCAAAATATCGGAAGGAGATGCA
ACAAAAATGCTAACACCAAGAGATTTATTAAATAAAATTACAGCGGGTGT
TGTCTTCGACCCAGACGATCATGATGAGTTTGCGCATTACGCTTCAAACA
ATTTGAGACCCCTTTTTGTATGCTCAAATCATAAGGAATTGAATGAATTA
CAAGTTTTACAATTCAAACATGGAGTGTTGATACTATTCACATTTGGGTT
TTGATGATGAAAGCATATTAACTCGAAATTTGTTGTGTTCAAATTTTGGT
TAGATAAAGTTGGCTGTTAAGACATGATGTTGATGCAGGTTGATGAGGAA
CCTTGGCAGGAAAATAAGCAAAATGAAAAAGTATAACATAAGTCTTATAT
GGAGACTTCAATATCTCATAGATTAGTACCAACAATGAGACCACTGAGGT
TTAAGACCTGTAAGACCTTTTTAAGTTAAAATAAGTACAGTAAACcccat
tttcaaattatttcagttCAATAATACAATGAAACTTAGGTGAAATGGGA
GTGCCAAATAAGACCCAATTTCACATGAGGCAGGCAACAAACAGAAGAAT
cattaaaagttatttttgatagTGTAAAGttttggggacacgagaagttt
tttttcacattggtGCAATGCAACGTGTTTTATCCCaacaacacaagaaa
aagtgcgtgtcccatggtttctttttttgtccctgggacaaaagtgagat
ttcactattattggtagaaagaaaaatgtggtGTGGACCCGAGAAAACTT
CATGTGTCCCCAAACCTTTaattatatctttttttttctttagttagTTT
TACAAATCTGAACTCCTTAAAAGTATAATATCATGATATTTATGAAAAGG
AAATATTCTAAACATGACTAGCTTCATGGGTTAAAATTTCCAAGAACACC
GTACGCTGAAATAtcatccccagtggaaaattatactccagtTTTTGTCC
Cgctaaaataattaaataaacaaatcctcgttgcaaaatattttgtgatt
ttccaTCCCCAATGAATTTTCTGGATTGAAAACAGTTGAATTCAAATC Run BLAST on NCBI transcript from alignment at sc0000047:352049..355851+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004620 ID=TCONS_00004620|Name=TCONS_00004620|organism=Clytia hemisphaerica|type=transcript|length=3803bp|location=Sequence derived from alignment at sc0000047:352049..355851+ (Clytia hemisphaerica)
TTTCCATCCTCATAAAAACAACAGATACCCCCCTTTCGCCCTGACTTGCA
CTGGTGTTAATTGTAAGCCCCAAGACTTGAAACCACTTTTTTTGTACAGG
TATATAAAGAGGAAATACATTTTTAAAGGGAAATGTCCTTTTCAGCTAGA
ATTAGTCCCTAAAATAGATTCTTCAAAATCAATGTTGAAATGGAATCAGA
AGAGGATATTGATTTCAATCAAAATGTTCTTGATCTGTGTGGAAATTGTC
ATGAAAAATGTGAAATGAAATGTGGCAATTGTAATGTAACCAGTTATTGT
TCAAGATTATGTCAAAAACTTGATTGGAAGTATCACCAACGTTTCATGGG
ATGTACAAGCACCAAAAAGACTTCAAATGAAGGGGCAGCCTCATCAAGTG
AACAATCCAACCAATACCCGATTCTTTTAAATGAAAGGAATAAGATTAAA
TATGGTGAATTGTTGAATGCACAGGTTGCACTTACGCATGCTTTTCTTGG
AGCAGGTAAATATTCTGTATAACATTCTTCTATCATTGGTAATTAGCGTA
ATTTTCTATCATATTAAAGAGCTTTCACAATTCTTTGTGAAGCCAACGCT
TTTTGCTGCTTTGGAAATTGCCAAAATGTTTGGATAGCCCCTCCTGCTCA
AAGAAAGGAAACCTAAGCCTGCGTCTACATATTTGTTCTGGTTTTGGAAA
TTGTCCTTTGTCTTTAACCATTTTTCACTTTGCTGATTTCAGGCCTgggt
ttttcaagatttttgtcctctcaaaattttttaccGGAAATACTCTGCAT
ACTTTTATTCATTATCTACttcaaaatcattgaaaatcttATAAGAGACA
TCCAATAACTGGTTTTACATCCTATGCTTTGCAGATTTGGTATACCAGGC
TGATGATGACCACATAGAAATGTTGATGGAGCAACGTCATAANGTGATAT
TTTTATGGCTGCACAATATTAAAGAGCTTTCACAATTCTTTGTGAAGCCT
TTTGCTGCTTTggaaatggccaaaatgtttgGATAGCCCCTCCTGCTCAA
AGAAAGGAAACCTAGGCCTGCGTCTACATATTTGTTCAGGTTTTGGAAAT
TGTCCTTTGTCATTAACCATTTCTCACTTTGCTGATTTCAGGCCTgggtt
tttcaagatttttgtcGGTTaatgtaaaacgcaggtcacaggtcgcaggt
cacaggtcacagatcagtgatgacaggttgactctaatcaatgtcattgc
agaggaaaatgtttggaaaacacaaagaattatcaaaaacataattctca
agcaatttcatccatataaaaccatttcaaacatcaaaatttaaccatgt
gcttttatcgatctttcgcagtttgcgctgtgtataacgcagaccagaga
atatttgaaaccatattatacgtataacaggtatattacatattgtaatg
tttgtaatgttatatgatggttaaatataataaaacacatcgctctaaaa
ctaccttctcacaGAACTCatgagcttctgattggtataactttatatcc
agccatattgttatcatcacattcggtatgctaaatatttttggtgtttt
tctcttgtaagacatgatattttgtgattctgtcaatatttttgtcaaaa
attgtcattaagtcatcaAAAATAACAATcgaatgattaattagtttcat
tcttctaaaaccactctcttagggacctcacaagcttctgattggtgctg
ttttatatccattcacactattaacatcacattctgtattataaattttt
ttttgtgtttttgtcttttcttgcatcagattttatgattctgttaatat
ttttgtcaaaaattgtcattaagatattaaaataataactgaataattaa
ttagttccgtccttctaaaaccactctcttagggaccttgcaagcttctg
tttggtgccattttttatccattcacaccatccacatcaaaTTTTgtata
gtaaatatttttcgtgcttttgtcttgttaggcatcatattttatgattt
tgtcattatttttgtaagtaagtgtcactaggttgttattctattNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtcattttataatatctaaataacatgtattacttt
tttgtaatttaatgcgttatgtattgatgttatgttatgtatatgttatg
atcttttttccggtctgcactttgttgacctgtgacctgcgacctgtgac
ctgtgacctgcgttttacactaaccggatTTTTGTcctctcaaaattttt
taccGGAAATACTCTTACGCATACTTTTATTCATTATCTACTTCAAAATC
ATTGACAATCTTATAAGAGCAACCAATAACTGGTTTTACATCCTATGCTT
TTCTTTGCAGATTTGGTATACCAGGCTGATGATGACCACATAGAAATGTT
GATGGAGCAACGTCATAAAACGTTTCAAAACGCTGGTCTCCCTATCACAA
TACCGCACATATTTGAAGGAATATTAGACATCAAAATATTTCGTACTTAT
GAAGGTGATGTATATTTTCATAACACGTGTTATGGCTTGGGAAGTGATAT
ATCAGGAGGACATTTACCGTCACAGAACCCCATCAAAATATCGGAAGGAG
ATGCAACAAAAATGCTAACACCAAGAGATTTATTAAATAAAATTACAGCG
GGTGTTGTCTTCGACCCAGACGATCATGATGAGTTTGCGCATTACGCTTC
AAACAATTTGAGACCCCTTTTTGTATGCTCAAATCATAAGGAATTGAATG
AATTACAAGTTTTACAATTCAAACATGGAGTGTTGATACTATTCACATTT
GGGTTTTGATGATGAAAGCATATTAACTCGAAATTTGTTGTGTTCAAATT
TTGGTTAGATAAAGTTGGCTGTTAAGACATGATGTTGATGCAGGTTGATG
AGGAACCTTGGCAGGAAAATAAGCAAAATGAAAAAGTATAACATAAGTCT
TATATGGAGACTTCAATATCTCATAGATTAGTACCAACAATGAGACCACT
GAGGTTTAAGACCTGTAAGACCTTTTTAAGTTAAAATAAGTACAGTAAAC
cccattttcaaattatttcagttCAATAATACAATGAAACTTAGGTGAAA
TGGGAGTGCCAAATAAGACCCAATTTCACATGAGGCAGGCAACAAACAGA
AGAATcattaaaagttatttttgatagTGTAAAGttttggggacacgaga
agttttttttcacattggtGCAATGCAACGTGTTTTATCCCaacaacaca
agaaaaagtgcgtgtcccatggtttctttttttgtccctgggacaaaagt
gagatttcactattattggtagaaagaaaaatgtggtGTGGACCCGAGAA
AACTTCATGTGTCCCCAAACCTTTaattatatctttttttttctttagtt
agTTTTACAAATCTGAACTCCTTAAAAGTATAATATCATGATATTTATGA
AAAGGAAATATTCTAAACATGACTAGCTTCATGGGTTAAAATTTCCAAGA
ACACCGTACGCTGAAATAtcatccccagtggaaaattatactccagtTTT
TGTCCCgctaaaataattaaataaacaaatcctcgttgcaaaatattttg
tgattttccaTCCCCAATGAATTTTCTGGATTGAAAACAGTTGAATTCAA
ATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004620-exon-sc0000047-1491911889:352049..352553 | TCONS_00004620-exon-sc0000047-1491911889:352049..352553 | Clytia hemisphaerica | exon |
| TCONS_00004620-exon-sc0000047-1510915933:352049..352553 | TCONS_00004620-exon-sc0000047-1510915933:352049..352553 | Clytia hemisphaerica | exon |
| TCONS_00004620-exon-sc0000047-1575043694:352049..352553 | TCONS_00004620-exon-sc0000047-1575043694:352049..352553 | Clytia hemisphaerica | exon |
| TCONS_00004620-exon-sc0000047-1491911889:354559..355851 | TCONS_00004620-exon-sc0000047-1491911889:354559..355851 | Clytia hemisphaerica | exon |
| TCONS_00004620-exon-sc0000047-1510915933:354559..355851 | TCONS_00004620-exon-sc0000047-1510915933:354559..355851 | Clytia hemisphaerica | exon |
| TCONS_00004620-exon-sc0000047-1575043694:354559..355851 | TCONS_00004620-exon-sc0000047-1575043694:354559..355851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:352049..355851 + |
Blast
The following BLAST results are available for this feature:
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