TCONS_00004634 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004634
Unique Name	TCONS_00004634
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1465

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000047:401961..407979+

transcript sequence

>TCONS_00004634 ID=TCONS_00004634|Name=TCONS_00004634|organism=Clytia hemisphaerica|type=transcript|length=1465bp
TTTGTCGGCTGTCATTTGTCGGCTGTATGTTTCTTGAGGAGCTTATCTTT
TGGTATGTTGATTAAAAATCCAGGGGCCACAAAGAAGAAGATCTAGCGTT
GGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAGTCAAGAAAAG
CCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAACAAGGATAAAT
TGACAGACAACTGGATTCACAACcgtgaaaatgttcaaaatggcGTCGTT
TTTAATATGAAGGTGTTGGGCAAAAAAGTGGCGACAACGGCACAAGGGAA
AGGATGTACAGATGACGCAGTCAAAGAAATGGTCCAACAACATAAAGTGA
AAGGCAAAACGGAGAAACTATTGAAAGTTTCAATGAGGGTGGATAGCAAG
AAAATGATAATTCGAGATCTTGTTACACACGAATTACTCGAAGATGTTCC
AGTCAATAGAATCTCCTATTGTACAGCTGATCCGAATTTCCCAAAAGTCT
TTGCGTTGATTGCACGAGAACGAGGTTCCAAAACACTTTTCACGCATGCC
TTCTTAACGAACAAGAAAGAAATGGCTGAAGCAATCGCATTAACAGTGGC
TCAAGCGTTCACAATGGCTTACGAGGAATGGGATGAAAAATCGAAAGAAA
GACAACGCGAAGTTGAAGATGAACAAGCATCTGATGCGCTAGAATTATAT
AAAGATCTAGCGTCGGAATCACCGAAACCCGATTCTAATCCATTCAAGAA
GGAAGACCAAGAAGatgatttcaatttcatttcaagttCACTGGCACCAA
GAGTTCAAACCATCGAGATAGTGGAACCATTGGATAACGAAACACATTCA
GATGGTGCTTCATCGGACGATGATGAATTCTCAAGGTCAGTAACAGCAAA
AGAAACCTTCCTCTTTTCGCACCGGACACATTTGCGCCCGGTCTCAAGAG
TTCCCGTAATGTAACACCGGACAGTTGTTTCTGTCGTAACTTGATAATAC
TTTTTGGCACAGGACAGTCCGGAGCGTCGACAGGGTCATTTGGGTCAAAT
AAGGATTTTAATTACAGAGTGATCGACTTCAATTTAACAGTGAAATACTA
ATTTATACGTCCGTAAATTTAAACAGACCTGATATCtacggaaatttcaa
aattcattgccgtactaGGCTACAAGTTATACGGTAAATAGACTTTGGTA
CTAAATTGTTGGAGTGTCTTGAGACTCGAACTAATTTTTGAATCGCTAGT
GAACATAGATATAACCGTGCCAGAAATTCATTTAGAAGTACAAAGTGCAT
AGCTGTGACTTTGAGACGATGGTGTCTTTCCtatacttaaccaattttgt
gaaaaagcaACTCCAAGAATTGTTCTATTCCATTCGTATATTATAAACTt
tgtacagtatgtggcccccaaaacggcgatcaaatttgaaatttctctca
aatctagaggaaaag

Run BLAST on NCBI

transcript from alignment at sc0000047:401961..407979+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004634 ID=TCONS_00004634|Name=TCONS_00004634|organism=Clytia hemisphaerica|type=transcript|length=6019bp|location=Sequence derived from alignment at sc0000047:401961..407979+ (Clytia hemisphaerica)
TTTGTCGGCTGTCATTTGTCGGCTGTATGTTTCTTGAGGAGCTTATCTTT
TGGTATGTTGATTAAAAATCCAGGTAAATCATAAAGATTGTTTTGGGCTG
TACCCGATTAACAagcatttgtaaaattttttagTTGTTTAATTAATCTC
TGATTACTCTTTCATCGACTGTTTTACTTgctattattatttttcttcgt
GCGAAAGTTTTGTCTGGTGTCCTCGTTAGACTTTTcgttcttaaaaaata
tttcacataTCAAAGCAGCTTTTTTTTCCATAGATACATACAAAAATGTT
GAATGAAGAACAGAACTTTGAGGCGTTTCAAGTATTTCACTGAACAAAAT
TAAACTTCCCAGAACAGGCTAGTTCAGTAGCGACCCagcaatgtcaattg
aatatcGTTCTTTATTCTATTGACTATGGAGCCAGTGCTGGCTTTATCTT
AGGTTTCCTCCTTTAATGCTAATCAATCTAATCGAAATTCTGTGAAAAGT
CTTTGAATCCGTGGAtaacatttttgagatttaatcAAATTAGAATCGAT
CTCAATCGCTAAAAGTCTGTAGATTTTTATCAATAACATCATTTCCATTC
TTTTGCTAATGACTGTTGCAcccgtttttttataagaacatcccaaactt
ttgaagcctgctgattttcttaactttctgagttcaaagcctaaaaattt
tcttaacatgttctagactggcacgccagtcgggctggaacggtatcacg
cgggaaaagtgagcgtaggagttaggtaagcgtaggaagaaattttgtcg
gcggcgagGGNNNNNNNNNNNNNNNNNNNNNNNNgttaatcagcagcctc
tcaccaacttttgctcgctctcctacgcagctcctattctagcaaacgcc
cgccacctttatgttcccgccctctgacatgataaATTAACAGACTAGTA
TGCTAGtctaaacatgttcttaatttcacaattttgtgagtattttgtgC
AATCTTCTATGAAATTGGTTGTTTTAGATTCTGCAAAGAAAAGTTTGTTT
TcctatataatttgttcttaaaaaaatgtgtacttaTAAAGAGACTGATT
GCATTTAAATAATCAAACAGTACTATTTTAGTCCAGCCTTTGGTGTTCGT
GTTCTGTACTTGTGTATTAAACTGGGTTAAATCTCAAGAAATTTTCACCT
TATTCGGGTAGGAACACTATAGCTGGTACTGACAAGTCTTACAAATAttg
atatttgaaatttttgacctAACACTTTATGAAACCAAAAgtttttagat
tatttttgaaatgtttttaaccaaaaatagTATTTCGTGCATATTACTTT
CGGCAAATGCACAATTTTACACAGATCTTTCTTTCTGTATCGTTTCAGGG
GCCACAAAGAAGAAGATCTAGCGTTGGGATAGCTATGGATTCATTGAAAA
TCGCTGCTAATAAAGTCAAGAAAAGCCCTAAAGCTTTGAAATGTAAAATT
GATAATGCTCTCAACAAGGATAGTAAGTgatcctttgtattttttttggt
ctttttcctgtcaagaaaaatttcctgaaatttcaaatttgtgttcctcg
tgcgttttcgagttatgaagaccaCACTGTAAAAATCTTCTTGTTTTATC
ACCGCTAGTCAGAAGATTCTCACTGCTACCGGGTCGTTGAGACAGGGTTG
TTAGAGAATCTCCATTCGTTGGTTTTCAGTAGCAGACTATATTCAGGTCT
GTTTCATTTCTTAGTACAGTGGTTGAATAACTATCGGATATCGAACATTG
TCGGgtcaaaaatcataaatttcaagCAAAAGCAACCTTGTCCGGTCATT
TTGACCGccccacttgaaatcgttatcTTCAGCCAAGGTAGAGGTACCTT
CGAATTTCTTCTAGCTGTTCGCAACATTCTTAACAAGTCTCGGTATTATC
TTAACCTAATCATCATTATTGTTTTTCAGAATTGACAGACAACTGGATTC
ACAACcgtgaaaatgttcaaaatggcGTCGTTTTTAATATGAAGGTATTT
ATGGAATTCTTtgttttcgatttttctttaATTCTTATATCAGTTACATT
ATATGAAAAGGAAATCTTTGTGAAAGTATCACTATAGTAGTGAAATGTTT
TCGGAAAGCAATTGGAAATCTCTTTTCAATTCTGATTTCATTTCTTTCGA
ATCTGTTTTTCCTCTTACTCCGAATGACATATAATAAATTCCAATATGAT
TTACTCCAAGGTCATATATAATAATTTAAAGCCAGGCCAATGCTATGCTA
TGCCTAACCTAGCCAGGTATACATCAATGATTTCCCACTGAACTGTTAGC
GCAAGCTAGAATTAgaactagagtctacttctgactaGAATTTGCTTTCA
GATGATTTTTAATTGAGTCCAGAGATCCACCAATAAgtgccatccagtct
atcataAAATCATAAGTGGCCATCAAGCTAGCTATACCCTAGCCTCATAG
GTGAAATAATTTCCAAAGAAATAGGCATTTTTTCTCCACCCATAGGTGTT
GGGCAAAAAAGTGGCGACAACGGCACAAGGGAAAGGATGTACAGATGACG
CAGTCAAAGAAATGGTCCAACAACATAAAGTGGTAAGAATTGTGTAGCTG
TGGTGTTCTTCAGTGGGCGGTGATGTGATAGGGCGGAGAAGGTTATTTAT
AATAAGATGGGTGGATGTCTAaacttttgacgtcaaaaatgttttgaaac
gaATGTTCTGAACACAATGAGCGTACAATAGACGATGTGGACAACAGATC
CTTTTCATTTACCACCTGACTTCTGTCGCCCAGTTTTCTTTGGGTTAtcc
tttttttataattttttttttagaccCCATATATTATGATATTGCTAAAT
GTTTTGAAGCTTAGTCAACAGAGTAAAAAAAGCATATTTTCCACATACCA
GACTTACAGTATAATTTGGTATCGCGATAATGAAAGAcgataagaaaaaa
aacttcatttccttaaaaggaaaaattaagTTCAGTCACATGTTGTTATT
TCAAAGGAAGGAAAAACTTAATGAGCATCTAATGACTGATAATTGGGAAA
GAGCATTTTCATCCTGATGCATCATGCGAAGGGAGGGAAATGCGTCATTT
AAATATACAGTATCCTTTTTACATTAATTTCGGTGCCTCATCTCTGTTTT
CGTTCCTTCATACAACAGCTTGTTAATTAGTCattaaaatgactagtaat
taATCAATCCCTCTATAAATGGGTTCTCATAACAGATGTTAATTAGTTTT
TTATATGTATCGAACTTCCTCTTACAAGTATTTGAAGTGCGCAGAAGGAA
TACCCAAAAAAATCcgtaaaacaaaaataaaaaaaactgtcaCTTTTATA
TGAAGGTACAATAGTCAATTACTGTCCCTGAACCCAGATTCTCTTTTGag
atttaaatatttctttttttttcttacagAAAGGCAAAACGGAGAAACTA
TTGAAAGTTTCAATGAGGGTGGATAGCAAGAAAATGATAATTCGAGATCT
TGTTACACACGtatgtttcttcttttcatttcatttcattaaaatatttt
gattttttttaaaccccCGGTTTGCTTTTACGTATTGTGGTCTGATCTGA
TAAACATTGTCATAGTCGTCGTCTCGTCGTGAACCAAAAAATGGTCTTGA
TTCATCACTGTCAGGGGAGATAAAATCAGCTAACAGGCTTTTGTTACCAC
TCTGCACAAATTGATGGAAGGTAATTTTAGTCAGGGAAAGTTTTAGTCac
attttagtcatttttcccGATACACAAATTCCTACCGATTGTATTCTTAC
CACGTCCAGCCCTTTAATGGGAGTTATTATTGCTTTATTTTAATATGTTA
TTGTTTTTTGTAGGAATTACTCGAAGATGTTCCAGTCAATAGAATCTCCT
ATTGTACAGCTGATCCGAATTTCCCAAAAGTCTTTGCGTTGATTGCACGA
GAACGAGGTTCCAAAACACTTTTCACGCATGCCTTCTTAACGAACAAGAA
AGAAATGGTAAGTAAATTAGCCGAACTTAAGTTTCATCATCTCTAATTTC
AGACAAAGATCTTATCACTACTTCCATTAGCTTgcatacagtcaactctc
tctaattcgaatttctattattcgaatctctctctaattcgaactataCT
GTTTGTGCCCTCAGTTAAGAAAtagtataaaatactttttctaattcgaa
gaaaattcctggtcccttgaagatcgaattagaggaGGTAACTGTATTAT
AGGCTTGTAAACAAAGCCTCTTGTAGCACTGTTTGTAATATATAACAAAC
AATAACGGAAAGGGCAAACATGAACGTATAGATAGGTGCTTCGAGAAAAA
TGACGACAGTGTTGTTTCCGAATGCAGTTGGTGAAGACGCGTGTTGGCCT
GGGAATCTGAGATGACAAATCTAGGTTACAAAAGTAGATCTACTGCTCCA
TCAATCTAGAGAAAACAGTGTCCCCTTGATAGTCATTTCGGTACGATTGC
AAAAAAGATTGCATATTATCGTGAACATATTTCAACCAACCTTGTAACCT
TTGTGTTCAGGCTGAAGCAATCGCATTAACAGTGGCTCAAGCGTTCACAA
TGGCTTACGAGGAATGGGATGAAAAATCGAAAGAAAGACAACGCGAAGTT
GAAGATGAACAAGCATCTGATGCGCTAGAATTATATAAAGATCTAGCGTC
GGAATCACCGAAACCCGATTCTAATCCATTCAAGAAGGAAGACCAAGAAG
atgatttcaatttcatttcaagttCACTGGCACCAAGAGTTCAAACCATC
GTAAGttgtttttcaactttttttacgCTTCGCTAATTTAATATATCCCT
GTCTCTTAGCAGTGAATGTTGGAAAACCAATAGGCTATTTCACAATCGAA
ATGGATTATGGGTAATCAgtactgattgcgcctccataacggcttcccgt
tggctagactcaaaaaatcttcaaaaattttcaaaactttggaccaatag
gaaatcgtcattagcgcgcagtgtTCCTGAtcacccattacgctttgcgc
ctgtgaaatggcctatggaATATCTGAAACTcagtttcttttaaattcga
gTAGGTAGGAAGACCAAAATGTCGTTGAATTTCATAGAAATGAGTAGTTC
GGCATACTAGACAACTAATATAGACGTATTATCGCATATCGATTGTTTTA
TGATGGATTATAAACTTATATACTTATAGACTTCATGATATGAGATATTT
CAGAAGAAAACAGACTTGACTCGAATTCTGCTTTTTTCCACTAACATTGA
GTTCTTTTTCATCATTAGGAGATAGTGGAACCATTGGATAACGAAACACA
TTCAGATGGTGCTTCATCGGACGATGATGAATTCTCAAGGTCAGTAACAG
CAAAAGAAACCTTCCTCTTTTCGCACCGGACACATTTGCGCCCGGTCTCA
AGAGTTCCCGTAATGTAACACCGGACAGTTGTTTCTGTCGTAACTTGATA
ATACTTTTTGGCACAGGACAGTCCGGAGCGTCGACAGGGTCATTTGGGTC
AAATAAGGATTTTAATTACAGAGTGATCGACTTCAATTTAACAGTGAAAT
ACTAATTTATACGTCCGTAAATTTAAACAGACCTGATATCtacggaaatt
tcaaaattcattgccgtactaGGCTACAAGTTATACGGTAAATAGACTTT
GGTACTAAATTGTTGGAGTGTCTTGAGACTCGAACTAATTTTTGAATCGC
TAGTGAACATAGATATAACCGTGCCAGAAATTCATTTAGAAGTACAAAGT
GCATAGCTGTGACTTTGAGACGATGGTGTCTTTCCtatacttaaccaatt
ttgtgaaaaagcaACTCCAAGAATTGTTCTATTCCATTCGTATATTATAA
ACTttgtacagtatgtggcccccaaaacggcgatcaaatttgaaatttct
ctcaaatctagaggaaaag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002609	XLOC_002609	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000047	supercontig	sc0000047:401961..407979 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.608046	7.89357e-08	0	0.784741	0	0	0	0	0	0	0.604378	0	0.645242	0.570493	0.668896	0	0	0	0	0	0	0.000103564	0	2.57947e-08	0	0	0	1.94741	0

Blast

[Close]

BLAST of TCONS_00004634 vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.109e-36
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 2

Query:  110 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 706
            MD+LK A   + +SP   K          KL +NW   RE +  G++F++K LG  +    +G+  +  A+K +V   K  GK  KL KV+++V  + +I+ D +T++L+E+V + RISYCTAD    KVFA IA+ + +++L  HAFL  K++MA+A+ LTVAQAF +A+E W    +E++ R+   ++  D L   +D
Sbjct:    1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198

The following BLAST results are available for this feature:

BLAST of TCONS_00004634 vs. Swiss-Prot (Human)

BLAST of TCONS_00004634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARH	1.109e-36	37.50	Low density lipoprotein receptor adapter protein 1...	[more]

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TCONS_00004634 (transcript) - C. hemisphaerica