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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004677 ID=TCONS_00004677|Name=TCONS_00004677|organism=Clytia hemisphaerica|type=transcript|length=324bp
GTGAATCCTGAACACAAAACATTGATTGGCAACAACGGAGATAGCCAAAG
TAAGGATCAGCAACCAAAACAAATGCAGCAAGTCGAAGTTCGATCCATTT
CCTGTCAAACATCTCTCTCCATTCCTCTAAGAGAAGTTGGTACTAGGAGC
TTCATTTACGTCAGTTGGCCAAGTGGATCCAGATTTAGAgaggtaaaaaa
aaatcttgcagcaatgatttcaatctTGGGATCTGCATTTTTTTAGGCCT
ATCATTAACTGATACTTATTctttatgttgttttttattgcttttCTAAG
TGTTATGATTGACCACCATTAACA Run BLAST on NCBI transcript from alignment at sc0000047:293114..296066- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004677 ID=TCONS_00004677|Name=TCONS_00004677|organism=Clytia hemisphaerica|type=transcript|length=2953bp|location=Sequence derived from alignment at sc0000047:293114..296066- (Clytia hemisphaerica)
GTGAATCCTGAACACAAAACATTGGTAAGGATTATTTGTCTTGTGATGAT
TGACTTTCAACTATGAAACTGTGTGAACTGTCAATGTTGGCAAGGGATAT
GAAATATATACAGACCACCTCTGTGTGCCGCATCTTGCCATGGGTGGATA
AAAACCTTTATTAAACTGTTAAAAGTCACTTCTTTTGGTGGCATTCAGAC
TTTGAAGCTTATCCTGCTTTAGGACATCAATAGTATTCCAATACTCTGAG
TGGGATCAGGTGTAAATTTCCGTTGAATTTTTTTATGTTTTTTTATGTCA
CATTTTGCCACATGAAGTTTCTTTACTCAAAACACCACACGTTTTTCTTG
CTCTCCATTCCAGGACCAAACGTAGCTAATCGATAAAATCTATTATCAAA
TATGATCGATAGTAATCCATGGATTAGATATCGAATCATCTGTGATAATC
GATATGTAATCGATACTCAGGATTTTTTGGGAAGCTTAATTCTTATTGAT
TAAGTATTGATCAAGTTTTTTCATTGATTATATAGCCAGACAGAACGGCT
AGTTCGAAACGCAGGTCACAGGTCACAGGTCAACAGGTCACAGGTCACAG
GTCAACAAAGTGCAGACCGGAAAAAAGATAATAAGATCATAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTTCCTCTGCAATGACATTGATTAGAGTCAACCTGTCATCACTGAC
CTGTGACCTGTGACCTGCGACCTGTGACCTGTGACCTGCGTTTCGAACTA
GCCGCAGACAGAACAGAATCGAGAATCAAACCGATCGAATCGAATCGAAT
GCAATGGACGGATTGAAATTCGATTGTCAAACGCAATCGAATCTCAATCG
AACTGCGAGATTCTAGGTAATATTTGATTGGTTCGATCAGGTTTGATTGC
CATTTTAGCGTTCAATGTTGTTCGGTGTTTGTCGACTACGTTCAATCTTG
TTTGATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAATGGTAGAGTAGAGCTGCGAGCGGAGCTGCATAGTTGTAT
TTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGCATGTTAGCCTCT
ACTGATGCAAGTTACCCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTATGCATGATACAGTAATTATGCATGGCTCTATCAT
TGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGTCCTCTTTGAA
AAAAGGTCTATTACGTTCAATGTCTTCAATCCAATCAATCGAATCTGAAA
ATTGCGGTAATATTTGATTGTTTTTGAATTGCGTTTGACAATCGAATTTC
AAGGGGTCGATTGCATTCGATTTGATTCGATTGGTTTGATTCTCAATTCA
GTTCGATTGAGATCGTCTGGATATAGGTATTGATTATTTATTAATATAAT
TTTATAATTGATAACTGATTGGAGGTATTCTGTTATCATTTGATGTTAAA
TAATTCAAAGTGATGTGTAGGCTATCAATGTGTATAAGTTGTGTTCCATC
AATTCAAATTGTTTCACTTTTGTTTATTGATGATATTTCTGTGCAAGAGG
ATTCACAACATATTTTTAATCCCAGCCTAAGTATTTTTTTGAATAATAAG
CTTTTAACTTTTTTGAAAGTCATGCGGTTGTGATCTATTAATTTGCCTGT
CATCTTTTCAAATCATAGGTGAACGAATGTCGAAAATCAAAAAAAGATTC
GACTATGTTTTAGATCTTGATCTGAAAAATGGAAAACATTTTATTTCTTC
TAGATTGGCAACAACGGAGATAGCCAAAGTAAGGATCAGCAACCAAAACA
AATGCAGCAAGTCGAAGTTCGATCCATTTCCTGTCAAACATCTCTCTCCA
TTCCTCTAAGAGAAGTTGGTACTAGGAGCTTCATTTACGTCAGTTGGCCA
AGTGGATCCAGATTTAGAGAGGTAAAAAAAAATCTTGCAGCAATGATTTC
AATCTTGGGATCTGCATTTTTTTAGGCCTATCATTAACTGATACTTATTC
TTTATGTTGTTTTTTATTGCTTTTCTAAGTGTTATGATTGACCACCATTA
ACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004677-exon-sc0000047-1575043694:296043..296066 | TCONS_00004677-exon-sc0000047-1575043694:296043..296066 | Clytia hemisphaerica | exon |
| TCONS_00004677-exon-sc0000047-1575043694:293114..293413 | TCONS_00004677-exon-sc0000047-1575043694:293114..293413 | Clytia hemisphaerica | exon |
| TCONS_00004677-exon-sc0000047-1510915933:296043..296066 | TCONS_00004677-exon-sc0000047-1510915933:296043..296066 | Clytia hemisphaerica | exon |
| TCONS_00004677-exon-sc0000047-1510915933:293114..293413 | TCONS_00004677-exon-sc0000047-1510915933:293114..293413 | Clytia hemisphaerica | exon |
| TCONS_00004677-exon-sc0000047-1491911889:296043..296066 | TCONS_00004677-exon-sc0000047-1491911889:296043..296066 | Clytia hemisphaerica | exon |
| TCONS_00004677-exon-sc0000047-1491911889:293114..293413 | TCONS_00004677-exon-sc0000047-1491911889:293114..293413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:293114..296066 - |
Blast
The following BLAST results are available for this feature:
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