TCONS_00004678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004678
Unique NameTCONS_00004678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004678 ID=TCONS_00004678|Name=TCONS_00004678|organism=Clytia hemisphaerica|type=transcript|length=1371bp
TTCAGAGAGCTAAAGAGTAAAAATATCCATTTTAAAGAGAATTAAAATCA
CTAAATATTAACACACATATGGAAATTTCAACAGATACTTCAGTACCTAA
ACCACAAAAGGTCCGAGATGTCAAATGTTTTGTGTGCAGTGGCGATTCAC
CCAAGTACCATTGTCCAAGATGTGGTGTCCATTATTGTTCACTGGTTTGT
TATAAGGATTCAAAACATGAAAGTTGTTCGGAAGCTTTCTATAAAGAACA
GGTTATGGAAGAGCTGAAAAACATGAAAGGCTCTAAAGAAGATAAAATGA
AGATGTTAAAAATgctacaaaaacaacaacatgaaCAACAACAAAACGAG
TCATGTGATGATAATCTAAGCCAACGATTGGCTGGAATTCACATGGACGA
CCATGAAGGATTATGGGAGAATttgagtgaagaagaaaaacactTGTTCA
ATGAACGCCTGAGAACAGGAAATGTTGATTTCTTAATCACCTGGAAACCT
TGGTGGAAACGGGGAAGCCGGACTCAAAAACTACCAAAGTTGTTTCCAGA
GTTTGAGACATGTCAGCAACTTCTAAACGGTAAGCCACctcatttttcat
tgaaatttaatTGTTGTGAGATCATTTTGACGTATGTAGCCACATTACGT
CTTTTCAATGGTGATTTATACGATTCACCGTTTGAGGTATGTGATCTAAT
ACATCAGCTATCAAATGTTCTATCGGAGGATAGGAGTTACAGTGACGTGG
AAAcggtttttgtattttttatacaaaaccaTCAAGAATTGGCTGGATTA
AGTGAAAAACATTTAGATGAATGTTTTAAAGATTTATCGTATTTTTTCGA
ATCAAGTCGAATGATAATGTTGCACGCTTTATgtgattttcataaaaaat
tgaaaaagttacGAAAATTGGTTTCCTTGAAGAAGGATGACCCTAAAACA
GAACTTTTATGTAAATTATACAAGAACATTAAAAAGTTGTATTTTCTATC
CTGTTTTTGTAATGAGAATGAGAAACTGGTCAGGGAGTCTGGAAAAGAAC
TTTTGAAGTTGTACAAAGTGAAACAGAAAGATCGGCTTGACTTTAACGAA
CACGTGCAAGATATTGAAAAACATAAACATCATTTGAAACCCAAAGTCGC
CGGACATAAAAACGATGGAGCAAACGTTTTAATCGAAGAGCTGTAACCTG
CTACGGTAATTTTCACTGTAAAAATGAGAATCAATAAATATAAATTGCAT
TTTAATTCTAATTGCATTTTAGTTTAAACGATAGATGATGAACGTTCTTC
ATAGATAATATCAGTTTACTATACTGTGTTAGCGAATTACATGTTATGAC
AAATTTGTTATAATaaatttt
Run BLAST on NCBI

transcript from alignment at sc0000047:318600..325584-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004678 ID=TCONS_00004678|Name=TCONS_00004678|organism=Clytia hemisphaerica|type=transcript|length=6985bp|location=Sequence derived from alignment at sc0000047:318600..325584- (Clytia hemisphaerica)
TTCAGAGAGCTAAAGAGTAAAAATATCCATTTTAAAGAGAATTAAAATCA
CTAAATATTAACACACATATGGAAATTTCAACAGATACTTCAGTACCTAA
ACCACAAAAGGTCCGAGATGTCAAATGTTTTGTGTGCAGTGGCGATTCAC
CCAAGTACCATTGTCCAAGATGTGGTGTCCATTATTGTTCACTGGTTTGT
TATAAGGATTCAAAACATGAAAGTTGTTCGGAAGCTTTCTATAAAGAACA
GGTAGGATAATTCTCAGGTGCCAAATTAACGGAGGGGGATTCTCAAATAT
TAATACATAGGGGAGGTGTCTAATTGCCTGGGGATTGAAAATTGTATCTT
ATAAAGTACCCCCCCCCCAAAAAAAAAAAAAAAAAAAGGAAATAAGAAGG
CGATTATGGACCAGAATTTACCAGTATTTACCACAAAAATGTCTCTTTTT
TGACGACTGAAAATATTTTCAAAAATTCATAAATATGATGGTCCTAATAA
GGTCGGAGGCAGGGGGGTCATACACAGTTGGTACCAGACATCATGAAAAA
CATCATAACTGAAAAATTGAAAATTTGGAAGCCCACCACCCCTCAGCAGT
TAGTACCCAAAAGTAAAGTGTATTTGACTATTGACAGGATGACACCCCTC
CTATTCGCACTTAGTAGCCCAAAGTACTAAGTGCATTTAACTATTCGCAG
GTCGACACCGCCCCTATTTGCACTTAATACCCCGAAGTACTAAGTGCATT
TGACTATTGGCTGGTTGACACCACCCCCTTTTCTGCCCTCGGTTAGTGGT
CTGTAGTGACTGACACTCAAGAGTTGGAACCCTTGGCAGCTATATTTGAT
TTATACCCACAAGGTACAAATTTTTTTTATAAGCAGCTCCATTTTTCGGG
TCAGGGCTGGGATTGTTTAGCATTCTAGCTCATTTTCTGAAAAATTGCTT
GACCACCCCTGATATCATACCATAATTATACTAAGTGGATCAAGGGCTAT
CGTTTCTCATGCTTAGATTATCTAAAAAGCTTTTACTTTACGAGATAGTG
AAAAAAATTAGCTAATTTCAGGACTCGAGCCTTGCTTATTTAAAAAAAAT
GTGTACTAACTACAAATTCCAATAATCAAATATCACCCACACGTCTTGAT
GTCTGGTACCGGCTGCATGAACTCCCTGCCGGGGGTTGGAAAATATCGAA
AAATTAACAAGCAGGGCAGGGGGGCTGTTTGTTAACAACCAAAGTGTACC
CAACCTGTGCAACGTCTGCTTCGTTTGGTTCAAAATTACATGGTTGTTTT
GATATTAAATATCAAAATAACCAGGAAATTTTCACCAATCAGAACGATTT
GAAGGTTAAGAAAATTTCCTGAAAGTTAGGCTGGTTCATGACGAGTTGAG
CTAAGCAAGCGGGATTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCC
TTTAAATTAACCCATGTTTGTCCGTCCGTCCGTTCGTTCGTCTGTTACCA
ACTTTTCTCGAGATTGGCTCATTAATTTTTTCTGCTTTTAGGCACAATGA
TGCAAAATGATGATTCCTAAAAAGTGACGGAGCCCGATTTTCGAAAAATA
AATTTTTCGAAATATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGA
TTTTATCATTAGTTTTTTCTTAATATGGCCGAGTCCGATTTTTTAGAATA
TTTTTTTTCCGGCCGAAAATCGCCGTCTGGATTTTCATTGGACTTTTTCC
TTATAATTGATAACAATGCTCACCATCAAGCATGATTCAATTGTCAATAA
AACTGATTTTTGCGACCAGAACTTTTTATTTTCCCTACAACCCTTCCCTC
TCCCCCCATCAACAATCAGTGATGAATTTATTGCGTTATGCATTTTCGCT
TAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTCGCATTGCT
ATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTAG
TTCATCTGAGGTTATTGGTAGACTCAACCAGTTGTTTTATGGAGGTCAGT
ACATCAAAACTTTCAGTTCTCTTACAAAAATTTTTTTTCAGAGTAGTATA
TTTTTTACCCCGTCTCTTGCAGGTTATGGAAGAGCTGAAAAACATGAAAG
GCTCTAAAGAAGATAAAATGAAGATGTTAAAAATGCTACAAAAACAACAA
CATGAACAACAACAAAACGAGTCATGTGATGATAATCTAAGCCAACGATT
GGCTGGAATTCACATGGACGACCATGAAGGATTATGGGAGAATTTGAGTG
AAGAAGAAAAACACTTGTTCAATGAACGCCTGAGAACAGGAAATGTTGAT
TTCTTAATCACCTGGAAACCTTGGTGGAAACGGGGAAGCCGGTAAGTTCT
CTATATGCTGATGCAGAAAAAATATTTTGAAAATGAACTACCACATGATT
TTTTGGGTAAAGTTTTAATACATGAATTTCCTATTATATTAGCAGATTCA
TGTAAAAAAGTCACGAAAAAAGGTCAAGAAAAAGGTCGAATAAAAATCTA
ATCTGTTGAAAATTGCACACATAAACAATTTTTTGGACCTACCCCGGTGG
GGTGGAGGTCCTATAAATTAACCCGTGTTCGTTAGTTAGTTAGTTCGTTC
GTTAGTACGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAATTTTT
CTGATTTTTTGCACAAAGGTGCATTACTATAAACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTTGAGATTTTCTCGAGATTTTATCATTAGTTTTTTGCGATTTTTTGCA
CATAGATGCACATTAGTACTGCCGAAAAGGTGTCGAAAACCGTTTGCCGA
AAAAAGAATTTTTCCGGTCTGTAGAACTGGAAATGTGCCGGAAATCGTCG
TTTTTTCACATTTCCGTCACATTTTTTCAACTTATTTAATTGTTTCTTTA
CAGAAAAATGTTCTTTTGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAATCGC
AAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTT
TAACGGTCATGCTCACGTAGATATCAATTAAATTATATATGTGTTAAATG
CATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTTTCTTCAAATGTCT
GAAGTATGAGGTAATCTTTGCATGTCTCGGCCAATCAGAGCTTTACTCGA
TGTTCTTTACATGAATCTGCTAATAGGCGCTATCAGTAAGCAAGAAAAGC
CGATAATTTCCCTATGTAGGATAATATTTGGAGAAAAAGAATTCACAGTA
AAAAAACCAGCCTCTTCCCCGTGTATCCCAGGCTTTATTTACGTTACTGA
TGGACGCAAGGGAATATTACATTGAGTATAAATTATCCGGCGCTATCAGT
AAGCATAGCCGACAGACAATACCGGGTGTGTCACAAAAAAGTTTCTCCCT
TTAAACTGATTTTCTGGAGTGCTATAAATTTTAAATGAACGAATCCCTTT
CCATTAATAAGAAGAATGATAAACTTTAATTTTGAGGGGTTAGTATTTAT
CTAATTTGGTTCATCAGATCAGAAGTTATCCTCAGTTGAATAAGAAAGTT
ACTTCCAGAAAGTGCTTTTAAAAACGTTGAAAATCGACCTATCAAATTTT
TATTTTAAAATTGGTAGTCGCGATAGCCTTCTGCACGAATAAGAGCATTT
TTTAAGTAATTAAACGCCTAAATTTTGAAATTTTGAGTTTAGAAAGGGTT
TAAAATCTTTATCAAAACCATTTTCATTTTTTTTTGCCGAGCTAGACTGG
GTAAAGTCATTTTGATCCATTTTTATGAATCTTGCCAGAATTTCTGGCAT
TTTCTGACGATTTTTTTTCCTTTAGTCTTAAAATTTAACTTTCCTTTCTT
TGACAGCTAATTGTAATTTTTAATGAATAAAACAACAATGCTGATGTATC
ATGTGATCGTGCATCTATTTAATTTGATAGGCTGATTTTGAACGTTTTTG
AGCACCTTTTGGAAGCAACTGTTCAATTCAATAGAGCATAACTTTTGATC
TAATGAACCAAATTTAACTAATGACCCATCAAAATTTAAGTTAATCTTTC
TTCTTTTCAATGGAAAAGAATTCGTTCTTTTAAAATTTTTAGATCTCAAG
AAAATTCACTTGAAAGAGAGAAACTTTTTTTGTGGCGCACCCTGCAGCAC
CCTGTACTACACAGGGAATGAAAAGCTACATTTCTTCAATAATTTCACGG
TGAAATTTTGAAAAAAGCTTTGGAGCCTTTGACTGTGGATTCGCGTTAAT
GCAACCAAAACTGTTAAGTTGGTGACCTTTCTATATAAATAATTCAGCGT
AAGATTTATATTTTTTTATACTTCTCAAAGCAATGCATGTTTTTACGTGA
CGTTAGGAACCCACTCTTAGTCTTAAGCGTCCGTTACTTAGCTTACTTTG
AGTGGCCATAAGGAAAATATCTTCTTTACACTTGAAAAAAGAGCGGGTTT
AGATTTTGCATTATATACATACAGATGCTTAAGCTCGTGCTGAAGTAACT
GACATTCATGTTGTAATGTTGAAATAAAAAGATCATTTGTAGCCTTTTAA
AGCAAAATATACTTTGTAATGTGTAGGTCGGAACGGACATTGGTTTCGAT
AAAAGTGTTTTTGCTATCGAAACAGATGGGATCTTAAAATAAAATCAGGA
AACTACATAGTCGACCTTTATCCCAACACGCGAGTTTTTGATACTCTGTC
ACATGAGTTTTTTTATCACCCTGTGAACGGTGTCAAGAAAGAAGCCGTGG
TCGTCTGGTCAGGCGTTCATACATAGTGGACAGAGGGGTATCAAGCCCCC
CCCCCTAAAAACGGCACCCCCTTCTTTTTACCCACGCCACTCCTTTCACA
AGCCTCCCTTCTTTTAAATTTAGTAAAATTCTCAAACCCCCCCCCCCCCC
CCTTGAAGGGGGGGGGCACCATGACATATTTTGATGAAAGAAAAGAAACT
GGTCCATAAATCCTATTTTGATATGCCGATTTGTATGATATTCGAAAATT
AGTCGTTTTCGGTAATGAAATAGTAATGAAAGTTTTTTTCTAACCAAAAT
TCATAATAAACAATTCTGGAGGTATTCTTGCAGGAGGTTTAAGCAGTTAG
TACAAGACACTATAATGCCTACTAACTGTAAAATACGATGTTTTTTTGAA
AGTGTCCTCAGAAAATTTCATTTTTCACGCAGCTAGTTTCAAAATTTGGC
AATTTTTTAGCAAGGGACCGCCCTTTTTTGCAGTTAGTACGTACCTGAGT
ACCAAGTGATTTCATCCAATTCACATGGCACACCACAAAGGTACTAACCG
GCATAGTGTCTTGTACTAACTGTTTGACCCCCTGATTCGTATATCATCCA
TGGTTAAGATTTATAAAAGCGTTCTTTTTTACAGGACTCAAAAACTACCA
AAGTTGTTTCCAGAGTTTGAGACATGTCAGCAACTTCTAAACGGTAAGCC
ACCTCATTTTTCATTGAAATTTAATTGTTGTGAGATCATTTTGACGTATG
TAGCCACATTACGTCTTTTCAATGGTGATTTATACGATTCACCGTTTGAG
GTATGTGATCTAATACATCAGCTATCAAATGTTCTATCGGAGGATAGGAG
TTACAGTGACGTGGAAACGGTTTTTGTATTTTTTATACAAAACCATCAAG
AATTGGCTGGATTAAGTGAAAAACATTTAGATGAATGTTTTAAAGATTTA
TCGTATTTTTTCGAATCAAGTCGAATGATAATGTTGCACGCTTTATGTGA
TTTTCATAAAAAATTGAAAAAGTTACGAAAATTGGTTTCCTTGAAGAAGG
ATGACCCTAAAACAGAACTTTTATGTAAATTATACAAGAACATTAAAAAG
TTGTATTTTCTATCCTGTTTTTGTAATGAGAATGAGAAACTGGTCAGGGA
GTCTGGAAAAGAACTTTTGAAGTTGTACAAAGTGAAACAGAAAGATCGGC
TTGACTTTAACGAACACGTGCAAGATATTGAAAAACATAAACATCATTTG
AAACCCAAAGTCGCCGGACATAAAAACGATGGAGCAAACGTTTTAATCGA
AGAGCTGTAACCTGCTACGGTAATTTTCACTGTAAAAATGAGAATCAATA
AATATAAATTGCATTTTAATTCTAATTGCATTTTAGTTTAAACGATAGAT
GATGAACGTTCTTCATAGATAATATCAGTTTACTATACTGTGTTAGCGAA
TTACATGTTATGACAAATTTGTTATAATAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002636XLOC_002636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004678-exon-sc0000047-1575043694:325334..325584TCONS_00004678-exon-sc0000047-1575043694:325334..325584Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1575043694:323194..323462TCONS_00004678-exon-sc0000047-1575043694:323194..323462Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1575043694:318600..319450TCONS_00004678-exon-sc0000047-1575043694:318600..319450Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1510915933:325334..325584TCONS_00004678-exon-sc0000047-1510915933:325334..325584Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1510915933:323194..323462TCONS_00004678-exon-sc0000047-1510915933:323194..323462Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1510915933:318600..319450TCONS_00004678-exon-sc0000047-1510915933:318600..319450Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1491911889:325334..325584TCONS_00004678-exon-sc0000047-1491911889:325334..325584Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1491911889:323194..323462TCONS_00004678-exon-sc0000047-1491911889:323194..323462Clytia hemisphaericaexon
TCONS_00004678-exon-sc0000047-1491911889:318600..319450TCONS_00004678-exon-sc0000047-1491911889:318600..319450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:318600..325584 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.622	26.8988	9.74859	7.01637	6.77153	5.37633	8.33512	7.52382	7.83001	7.91413	8.63636	9.78248	10.9067	10.5499	12.1241	13.9979	7.80097	8.48548	8.53046	5.5991	11.2071	10.8222	42.2923	32.1697	12.9876	12.4678	7.5377	8.53376	18.8554	21.068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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