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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004689 ID=TCONS_00004689|Name=TCONS_00004689|organism=Clytia hemisphaerica|type=transcript|length=5289bpRun BLAST on NCBI transcript from alignment at sc0000047:409575..426140- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004689 ID=TCONS_00004689|Name=TCONS_00004689|organism=Clytia hemisphaerica|type=transcript|length=16566bp|location=Sequence derived from alignment at sc0000047:409575..426140- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004689 vs. Swiss-Prot (Human)
Match: RPB2 (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1) HSP 1 Score: 1454.5 bits (3764), Expect = 0.000e+0 Identity = 696/830 (83.86%), Postives = 772/830 (93.01%), Query Frame = 2
Query: 2 YSAPLYVDITKTVTKAGHDPESEEHGKVYIGKIPIMLRSSFCVLKGQTDRDLCELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFQKKDSKYAYTCEIRSCLEQSSRPTSTMFISMLARXXXXXXXXXXXQRIIATIPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFNDTEMMEMVKPSLDEAFVVQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDKGKDFRMDLAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDSTKIFVNGCWVGIHRDPEQLIITXXXXXXQMDIIVSEVSMVRDIRDKEIRIYTDAGRVCRPLLIVENQKLLLKKSHIEQLKEREYNDFGWADLVGKGVVEYVDVNEEETSMIAMSIENISFED-QYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRELPAGINSVVAIASYTGYNQEDSVLMNFSAINRGLYRSVFYRSYRDEESRKGLDQEERFEKPRRDETAGMRNAIYDKLDEDGLIAPGSRVSGEDVIIGKTCTLPEDEDELDSQTRHYTKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVRTPQIGDKFASRHGQKGTCGITY 2488
YSAPLYVDITKTV K G + +H K +IGKIPIMLRS++C+L G TDRDLCELNECPLDPGGYF+INGSEKVLIAQEKMATNTVYVF KKDSKYAYT E RSCLE SSRPTST+++SMLARGG GAKK +IGQRI+AT+PYI+QE+PI+IVFRALGFVSDRDILEHIIYDF D EMMEMVKPSLDEAFV+QEQNVALNFIG+RGA+PGVTKEKRIKYA+E+LQKEMLPHVG SDFCETKKAYFLGYMVHR+LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG+FKNL+KEVR+YAQKFID+GKDF ++LAIKT+ I+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN+ WGM+CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEW+MENLEEISP+AI D+TKIFVNGCWVGIH+DPEQL+ TLR+LRRQMDIIVSEVSM+RDIR++EIRIYTDAGR+CRPLLIVE QKLLLKK HI+QLKEREYN++ W DLV GVVEY+D EEET M+AM+ +++ ++ Y TYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSM++L+FRELPAGINS+VAIASYTGYNQEDSV+MN SA++RG +RSVFYRSY+++ES+KG DQEE FEKP R+ GMR+AIYDKLD+DGLIAPG RVSG+DVIIGKT TLPE+EDEL+S R YTKRD STFLR SETGIVDQVM+T+N+EGYKFCKI+VRSVR PQIGDKFASRHGQKGTCGI Y
Sbjct: 120 YSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949 HSP 2 Score: 464.922 bits (1195), Expect = 1.056e-138 Identity = 212/254 (83.46%), Postives = 233/254 (91.73%), Query Frame = 3
Query: 2454 VTARRVPVVSLIXGDKFASRHGQKGTCGITYRQEDMPFTCEGIAPDIVINPHAIPSRMTIGHLIECLLGKVSANKGEIGDATPFNDAVNVQRISGYLQEYGYHLRGNEVLFNGFTGRKLNAQVFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERDCQISHGSAQFLNERLFEASDAYRCHVCNLCGLIAIANLRNNTFECRGCKNKTQISQIRIPYACKLLFQELMSMSIAPRMM 3215
V + R+P + GDKFASRHGQKGTCGI YRQEDMPFTCEGI PDI+INPHAIPSRMTIGHLIECL GKVSANKGEIGDATPFNDAVNVQ+IS L +YGYHLRGNEVL+NGFTGRK+ +Q+FIGPTYYQRLKHMVDDKIHSRARGP+QIL RQPMEGRSRDGGLRFGEMERDCQI+HG+AQFL ERLFEASD Y+ HVCNLCG++AIAN R +T+ECRGC+NKTQIS +R+PYACKLLFQELMSMSIAPRMM
Sbjct: 923 VRSVRIPQI----GDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMM 1172 The following BLAST results are available for this feature:
BLAST of TCONS_00004689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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