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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004691 ID=TCONS_00004691|Name=TCONS_00004691|organism=Clytia hemisphaerica|type=transcript|length=2078bp
ctataaatGAAATGGAgtttaaaaataattcgcgTGAATGGAAAAAATGT
CTGTGttaaatatatattgttcaaaatgtctaaaaattaTAGTAAATTTG
CTGTCAAAATTTAAACTGGGAAAACTGAACTTGTTTGTAAATTATCCTTT
GGCAAACGACGTGTGTGGAGTAGGTCTCATTTCtaaccttgaaaaaaaaa
tgtaaaatcataATTTGAGAATGAAATAACAGCCAGAGAACTTTATTTAG
AAACTTTAACCCGCAGTCAGCACAAGCAAAGCAAAGTTTAAAATACAATT
TAGTTcaagattgaaaaaaaaggttaaaactcaaaaacacatgTGTCACT
TGACGAAAATTATCTTGGCCCCACCAGCAAGAGCTCTTAGCCAaataaaa
ttatgtttttcaagttatattagtacaagacttcctgatccataaaatta
tcactAGAAGGGCTTCCATTCCGTCCTGATAACATGGTAAAATTATCATC
GTGTGTTGTCCTTATACTTTCTTTGGTAGGTGAtgattgatttttcttgt
cCTTCTTTTTACCCCCGAATTTTAATTTCGATAATTTCTTAGAAATATAT
GTTCCAAAATCAACAACATTATTTTCGCCACCTACTAAAGGTTTCCTGAT
TTCAAATGGTTGTTGCTCCTTTCGAGTATCACTGCGCGGTGAAGCGTTCT
GTTTTTTGACAGGAGATGTTTCACCTCCGTTGGCGTACACTGCACCACCG
TTAGCATGTCCGTTAATAGCAGGTTGATTTCTTTGTTGATTACGTAACCT
TTGCTGCTGCAAAATGCGCTCTTCCATCAAAGACGTCGAATTGAATCTCC
GAAGCGGGTGCCCTTGAGGAAGAACTCTTTGAGCAGGTGATTTACTATCA
TTCGATTTCGTTGTCTTATAATAGATTGGTTCGTTATTAAAATTAACACG
TTTGGTCATTTTAGGAGACATAGCTCTCATCTGTCGCGGGTCGTTCCGTA
ACTCGCCCTCAAAAGAGTAATTCAAATTATGATAACTTCCACCGTGGTCA
GACGTACTTAATAGATCGCGTGGGCTGACGTAATCTAAATACACATCATC
AAAAATCAAGTCTTGTTCAGCAGAATGATTATTATTCAAGTCGTTAAAAG
ATGATGATTTCTTTAAAATAGATCGTGGCCGTCTATTATCTAAATCTACC
GAAGCGGGCCGCGCGTACTTTTGGGACCGCACTACTGAAGATTGTGATCG
AGATAAATCAACAGAACTCGGTCTATTATGATTGGTTCGAACGGCACCAT
TTTGTTGAATgttgttattgttatttttcCCGCGCTCTCTATAATCAACC
AATCGAATACCGTCACTATATGACCTTTGGACTCCAGCAGGATATGCAGG
GTACTGTCCAGAGTAATGACTACTAGTTCGACTACCACGGCTACTTACGC
TCACATTACTATTATTTCGCGAGACAGTCACAGTTTTAGGTTGTTTAGAG
GCGGTCTTGTGCTTATTTTGTTTGAACATAGCATCACTGTATGAACGTTG
AACCATAGCACCGCGTTGCATTTTCAATTGGTGTAAAGATTGCGGGTTGT
CACCATAGTAACCATTTTGTTGNCGGCTACTTACGCTCACATTACTATTA
TTTCGCGAGACAGTCACAGTTTTAGGTTGTTTAGAGGCGGTCTTGTGCTT
ATTTTGTTTGAACATAGCATCACTGTATGAACGTTGAACCATAGCACCGC
GTTGCATTTTCAATTGGTGCAAAGATTGCGGGTTGTCACCATAGTAACCA
TTTTGTTGGCGACGTTGTAACACTTCGAAGTATTCCTTTTGTTTCATCTT
CGGCTGTTTGTAAGAACGACTCGCTTTCTCCATTTCATCTCATTCTCCGA
TAAGCATCGGCTTATATTGTTGTCTAAATCTTCATCGTAAGATTCAGTCA
ACAATAACtatagaatatttttgtttcttctgtGATGTTATTTCTAAAGA
CAAGATAAAAGAATTGTTAATGATGAATTTGAGCTTTGATCAATCATAGA
GCAAATTCCTGGAAATGGCAAGGTTGGA Run BLAST on NCBI transcript from alignment at sc0000047:467472..469603- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004691 ID=TCONS_00004691|Name=TCONS_00004691|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at sc0000047:467472..469603- (Clytia hemisphaerica)
CTATAAATGAAATGGAGTTTAAAAATAATTCGCGTGAATGGAAAAAATGT
CTGTGTTAAATATATATTGTTCAAAATGTCTAAAAATTATAGTAAATTTG
CTGTCAAAATTTAAACTGGGAAAACTGAACTTGTTTGTAAATTATCCTTT
GGCAAACGACGTGTGTGGAGTAGGTCTCATTTCTAACCTTGAAAAAAAAA
TGTAAAATCATAATTTGAGAATGAAATAACAGCCAGAGAACTTTATTTAG
AAACTTTAACCCGCAGTCAGCACAAGCAAAGCAAAGTTTAAAATACAATT
TAGTTCAAGATTGAAAAAAAAGGTTAAAACTCAAAAACACATGTGTCACT
TGACGAAAATTATCTTGGCCCCACCAGCAAGAGCTCTTAGCCAAATAAAA
TTATGTTTTTCAAGTTATATTAGTACAAGACTTCCTGATCCATAAAATTA
TCACTAGAAGGGCTTCCATTCCGTCCTGATAACATGGTAAAATTATCATC
GTGTGTTGTCCTTATACTTTCTTTGGTAGGTGATGATTGATTTTTCTTGT
CCTTCTTTTTACCCCCGAATTTTAATTTCGATAATTTCTTAGAAATATAT
GTTCCAAAATCAACAACATTATTTTCGCCACCTACTAAAGGTTTCCTGAT
TTCAAATGGTTGTTGCACCTTTCGAGNCTCGCCGCCTACTAAAGGTTTCC
TGATTTCAAATGGTTGTTGCTCCTTTCGAGTATCACTGCGCGGTGAAGCG
TTCTGTTTTTTGACAGGAGATGTTTCACCTCCGTTGGCGTACACTGCACC
ACCGTTAGCATGTCCGTTAATAGCAGGTTGATTTCTTTGTTGATTACGTA
ACCTTTGCTGCTGCAAAATGCGCTCTTCCATCAAAGACGTCGAATTGAAT
CTCCGAAGCGGGTGCCCTTGAGGAAGAACTCTTTGAGCAGGTGATTTACT
ATCATTCGATTTCGTTGTCTTATAATAGATTGGTTCGTTATTAAAATTAA
CACGTTTGGTCATTTTAGGAGACATAGCTCTCATCTGTCGCGGGTCGTTC
CGTAACTCGCCCTCAAAAGAGTAATTCAAATTATGATAACTTCCACCGTG
GTCAGACGTACTTAATAGATCGCGTGGGCTGACGTAATCTAAATACACAT
CATCAAAAATCAAGTCTTGTTCAGCAGAATGATTATTATTCAAGTCGTTA
AAAGATGATGATTTCTTTAAAATAGATCGTGGCCGTCTATTATCTAAATC
TACCGAAGCGGGCCGCGCGTACTTTTGGGACCGCACTACTGAAGATTGTG
ATCGAGATAAATCAACAGAACTCGGTCTATTATGATTGGTTCGAACGGCA
CCATTTTGTTGAATGTTGTTATTGTTATTTTTCCCGCGCTCTCTATAATC
AACCAATCGAATACCGTCACTATATGACCTTTGGACTCCAGCAGGATATG
CAGGGTACTGTCCAGAGTAATGACTACTAGTTCGACTACCACGGCTACTT
ACGCTCACATTACTATTATTTCGCGAGACAGTCACAGTTTTAGGTTGTTT
AGAGGCGGTCTTGTGCTTATTTTGTTTGAACATAGCATCACTGTATGAAC
GTTGAACCATAGCACCGCGTTGCATTTTCAATTGGTGTAAAGATTGCGGG
TTGTCACCATAGTAACCATTTTGTTGNCGGCTACTTACGCTCACATTACT
ATTATTTCGCGAGACAGTCACAGTTTTAGGTTGTTTAGAGGCGGTCTTGT
GCTTATTTTGTTTGAACATAGCATCACTGTATGAACGTTGAACCATAGCA
CCGCGTTGCATTTTCAATTGGTGCAAAGATTGCGGGTTGTCACCATAGTA
ACCATTTTGTTGGCGACGTTGTAACACTTCGAAGTATTCCTTTTGTTTCA
TCTTCGGCTGTTTGTAAGAACGACTCGCTTTCTCCATTTCATCTCATTCT
CCGATAAGCATCGGCTTATATTGTTGTCTAAATCTTCATCGTAAGATTCA
GTCAACAATAACTATAGAATATTTTTGTTTCTTCTGTGATGTTATTTCTA
AAGACAAGATAAAAGAATTGTTAATGATGAATTTGAGCTTTGATCAATCA
TAGAGCAAATTCCTGGAAATGGCAAGGTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004691-exon-sc0000047-1575043694:468964..469603 | TCONS_00004691-exon-sc0000047-1575043694:468964..469603 | Clytia hemisphaerica | exon |
| TCONS_00004691-exon-sc0000047-1575043694:467472..468909 | TCONS_00004691-exon-sc0000047-1575043694:467472..468909 | Clytia hemisphaerica | exon |
| TCONS_00004691-exon-sc0000047-1510915933:468964..469603 | TCONS_00004691-exon-sc0000047-1510915933:468964..469603 | Clytia hemisphaerica | exon |
| TCONS_00004691-exon-sc0000047-1510915933:467472..468909 | TCONS_00004691-exon-sc0000047-1510915933:467472..468909 | Clytia hemisphaerica | exon |
| TCONS_00004691-exon-sc0000047-1491911889:468964..469603 | TCONS_00004691-exon-sc0000047-1491911889:468964..469603 | Clytia hemisphaerica | exon |
| TCONS_00004691-exon-sc0000047-1491911889:467472..468909 | TCONS_00004691-exon-sc0000047-1491911889:467472..468909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:467472..469603 - |
Blast
The following BLAST results are available for this feature:
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