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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004696 ID=TCONS_00004696|Name=TCONS_00004696|organism=Clytia hemisphaerica|type=transcript|length=3115bp
aaaacgaaGGCAAGAAACATCTGAAAATTCGAAAACAAACTCGGAGATGC
TTAGCCCTTACGAGGGCTCGACAAAGCTGAAAAATCTCAgctaaaatcag
aaaaatattttttataggcTTGAGGTAATTCTTAtcatatgcttaaattt
ttgtcATATCTGAGACAGATATGCTAATAACTggaatgcttataaaagaa
aaacatattgtGAAATAAACAGACCAAAAACTGGTCATTTTCTGACGTAG
AATATTTTGGATTTCTCTCTAAATTATATAcactaaaatatctaaaaaat
ataattcaagaatttcgttttaaaaatataaacattttaggggttatgtc
aaaaaatgctaacaagaaaaataatgcaAATCTCAAAACCAACTGAAAAA
CACGATATAAAGTTAGCTTAGATGCTAGTCTCATTAGTACTCGTGTAATG
TTTTGAATGGTCAGGAATTCGGTGAGCAGGGTCCCTAGGTAACAACAAAT
CTGTTTGATATAATTTGACTTTCATTCTACGATGAAGTCTCGGTCCATGT
ATCAATAACAGCCATATCGAGGCTGAAATTCCAATACTAAAGTCTGAAAT
GATACGCGTCAGAAAAACTGCAAAGCTCGGCCCCGTTGATTTCGGGTCAT
TATACCAGGGCCCTTTATTAACGTATTCGTAAAAATACGATGCTAATATA
AAAGTCATGAAAAGTGTATGCAGAGCAGCGTAAGAACCGATGGGTAGTAG
CAAATATTGATTCTTTTTACGCTCCATTAATTGATTTTCGTTCGGATCAG
GTAGTCGAAATAGACAAATCAAcccaaacaataaaaacatgGTAGCCATT
ATAAGGTACACAAAAAGTGGACCCAAAATTAACCAGCGTAAAGCTCGAAG
GTTTTCATATCGATTACCAATAGAACAAATCCCTGTCAGTTCGTTAACGT
CGATCTTACGCCATACTAGAACGATCACTGTTTTACAACAAGGGATTCCC
CAAGCTAAACTATGAAACATAAAACTTTTAGAGCGTATTGCTTCCGTAGC
CCATCTCATACCAGCTGATAGAAACCATGTCAAACATAAAATGACCCACC
AAATACTTTGCACCATAGAGAAACAGTACACGAGAAGGAAAGTGGCGGCA
CACGATATGTTACCTGACCCATCAACTAGTAAATAGTGTTGACCGTTCTC
CCTCTGACAAGTCACGCCTTCTCGACTGTACACGATACGAATCATATAGC
CAACAACGTAAAAAAAGTAACACACTGCTATAAAGAAAATGGTTCGTTCT
GGAAAACATGTCTCGTTATAATTAGCTAAAACACATAAAATTGCAGCTAC
ACTGAGGATTCCACATATGCAAGTTAATGCTGAAATCCAACGCTCAGCTA
ACTGTTTTTGTTGTGTAGTGAATATGCCATCCTTCATACATTCCAAAGCA
CATGATTGTATTTTCTCTACGTATATATAATTCTTGACGTTTCGACTGTA
GACGACttgacaatatttttctttagagATCAATCCTGTCGTTCGGACAG
CAGGAGTTGAAGTGACAGTCTGCGGAATGATACGTTTTGGTGTTTTCTTT
GTCTTTAAAGAAGCTGGAGGCACTTCAGTACTACTATGTCTGTTCCCAGG
CACACAAAAATCTGGTTCAACATTTTCGACTGGAAATTTTTCACAGTTCA
ACACGTCAGGCCATTTCAAATTGAATTCTTCTATATGTTTTTGACACTTT
GATTTAACTTCTTCACACAATGGTCGACAAGCAACAATTCCTTTCTCGTG
ATTAGCATGACAAAATGGGAGATATACACTACATAGTAACAAGCGAAGTT
TGCTTGAACATTGAGTTCTTTGAATAAGTAGTTCGTATATTTTGAGTTCA
GATAAGCTTTCCTCTTGACTGTTCTTATTGGTGCGTTCATTAGGGGCAGT
ACTCGACATAACGATCGTCTCATTATAGCCAATACCACTACAGAAATCTA
GCTTGACAGGGACACATTTCCACGATGATCCAAATTCATTTTTACGTGGT
GAAATCCTTCTTGTTTCAACATGGTTTAAAGATAAGCAGCCAAGTAACAA
CAAGCATGTGAAAAATGGCAATAAATGATGATCGAAAAATAACACTCTTG
TTCTATACATTTCTTTCCATTTAAAACAACAAGTTAGATATGTTATGTTG
TTGGTTTGTCTTCTTTTCGTCGTTTTGTGTTCATAAAATTCTCGTCTGGA
AAATAAGTTTAtaaacattataacaccattaTGAACTCTATTTCTCAACA
AGACAACAACTACAAATTAGATCCTATTTGACGTTATGGCACAAAAAAAA
TCTTGTAATGAGAGTGAGATAGAGAAAAGAAGAGGAAAAACTTTACATAT
CGCATCAACTAGACAAGTACCATGCTAATAACTCATTTCATTAATACGAA
CATTCACACTAACTGGCAAAAAAACAAcacaagtaaaaaatttgagactA
CATATCatcaaaactttatatattatattggaAAACGCGAAAAAGGATTC
TTTAATCATTTCTCCTAGAACAAATGAAGAACAAATCCATTTTTATCGTC
TTGtatagaaatatataaaaacttcttttttattttacagcTTATGAATT
AAACATCGATTGAACGTTTTTATCTAATTGTAATACAATAACCCCTGCCT
TGAATCGCTCACACTTCTTTTTACTCTCTCTACATGTTTTTGCAAACGAA
ATGTCACTGTTCAATAATATGTGCTAAAGCCTTTTGGTGTTTTAAACCAA
TCACATGCCTTGATTCACATTAGAATCCCGCCTCTATTGTTTTTTCCAAC
GACTTGTCAATTTGTAGAGAGTACATAAAGCTTATCAGAGGTGAAAAAGT
AAACATGATGAAAACCGGGGGTAAAAGAGAGGACAGAATTCTCTCAATTT
CCCACTCTCCTTGGAGTTCTTTATCAAAAGGCTAACAGCCACAAAATAGA
GGGGAAAAtgctttatttactttttttctttaaactATATTTTTCACTAT
GATTGATACTTatgtagaaaagaaataaagaaaaatagagtaCATCACCA
AGATGAAAAAAGGGG Run BLAST on NCBI transcript from alignment at sc0000047:516065..519249- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004696 ID=TCONS_00004696|Name=TCONS_00004696|organism=Clytia hemisphaerica|type=transcript|length=3185bp|location=Sequence derived from alignment at sc0000047:516065..519249- (Clytia hemisphaerica)
AAAACGAAGGCAAGAAACATCTGAAAATTCGAAAACAAACTCGGAGATGC
TTAGCCCTTACGAGGGCTCGACAAAGCTGAAAAATCTCAGCTAAAATCAG
AAAAATATTTTTTATAGGCTTGAGGTAATTCTTATCATATGCTTAAATTT
TTGTCATATCTGAGACAGATATGCTAATAACTGGAATGCTTATAAAAGAA
AAACATATTGTGAAATAAACAGACCAAAAACTGGTCATTTTCTGACGTAG
AATATTTTGGATTTCTCTCTAAATTATATACACTAAAATATCTAAAAAAT
ATAATTCAAGAATTTCGTTTTAAAAATATAAACATTTTAGGGGTTATGTC
AAAAAATGCTAACAAGAAAAATAATGCAAATCTCAAAACCAACTGAAAAA
CACGATATAAAGTTAGCTTAGATGCTAGTCTCATTAGTACTCGTGTAATG
TTTTGAATGGTCAGGAATTCGGTGAGCAGGGTCCCTAGGTAGCAACAAAT
CTGTTTGATACNGTGTAATGTTTTGAATGGTCAGGAATTCGGTGAGCAGG
GTCCCTAGGTAACAACAAATCTGTTTGATATAATTTGACTTTCATTCTAC
GATGAAGTCTCGGTCCATGTATCAATAACAGCCATATCGAGGCTGAAATT
CCAATACTAAAGTCTGAAATGATACGCGTCAGAAAAACTGCAAAGCTCGG
CCCCGTTGATTTCGGGTCATTATACCAGGGCCCTTTATTAACGTATTCGT
AAAAATACGATGCTAATATAAAAGTCATGAAAAGTGTATGCAGAGCAGCG
TAAGAACCGATGGGTAGTAGCAAATATTGATTCTTTTTACGCTCCATTAA
TTGATTTTCGTTCGGATCAGGTAGTCGAAATAGACAAATCAACCCAAACA
ATAAAAACATGGTAGCCATTATAAGGTACACAAAAAGTGGACCCAAAATT
AACCAGCGTAAAGCTCGAAGGTTTTCATATCGATTACCAATAGAACAAAT
CCCTGTCAGTTCGTTAACGTCGATCTTACGCCATACTAGAACGATCACTG
TTTTACAACAAGGGATTCCCCAAGCTAAACTATGAAACATAAAACTTTTA
GAGCGTATTGCTTCCGTAGCCCATCTCATACCAGCTGATAGAAACCATGT
CAAACATAAAATGACCCACCAAATACTTTGCACCATAGAGAAACAGTACA
CGAGAAGGAAAGTGGCGGCACACGATATGTTACCTGACCCATCAACTAGT
AAATAGTGTTGACCGTTCTCCCTCTGACAAGTCACGCCTTCTCGACTGTA
CACGATACGAATCATATAGCCAACAACGTAAAAAAAGTAACACACTGCTA
TAAAGAAAATGGTTCGTTCTGGAAAACATGTCTCGTTATAATTAGCTAAA
ACACATAAAATTGCAGCTACACTGAGGATTCCACATATGCAAGTTAATGC
TGAAATCCAACGCTCAGCTAACTGTTTTTGTTGTGTAGTGAATATGCCAT
CCTTCATACATTCCAAAGCACATGATTGTATTTTCTCTACGTATATATAA
TTCTTGACGTTTCGACTGTAGACGACTTGACAATATTTTTCTTTAGAGAT
CAATCCTGTCGTTCGGACAGCAGGAGTTGAAGTGACAGTCTGCGGAATGA
TACGTTTTGGTGTTTTCTTTGTCTTTAAAGAAGCTGGAGGCACTTCAGTA
CTACTATGTCTGTTCCCAGGCACACAAAAATCTGGTTCAACATTTTCGAC
TGGAAATTTTTCACAGTTCAACACGTCAGGCCATTTCAAATTGAATTCTT
CTATATGTTTTTGACACTTTGATTTAACTTCTTCACACAATGGTCGACAA
GCAACAATTCCTTTCTCGTGATTAGCATGACAAAATGGGAGATATACACT
ACATAGTAACAAGCGAAGTTTGCTTGAACATTGAGTTCTTTGAATAAGTA
GTTCGTATATTTTGAGTTCAGATAAGCTTTCCTCTTGACTGTTCTTATTG
GTGCGTTCATTAGGGGCAGTACTCGACATAACGATCGTCTCATTATAGCC
AATACCACTACAGAAATCTAGCTTGACAGGGACACATTTCCACGATGATC
CAAATTCATTTTTACGTGGTGAAATCCTTCTTGTTTCAACATGGTTTAAA
GATAAGCAGCCAAGTAACAACAAGCATGTGAAAAATGGCAATAAATGATG
ATCGAAAAATAACACTCTTGTTCTATACATTTCTTTCCATTTAAAACAAC
AAGTTAGATATGTTATGTTGTTGGTTTGTCTTCTTTTCGTCGTTTTGTGT
TCATAAAATTCTCGTCTGGAAAATAAGTTTATAAACATTATAACACCATT
ATGAACTCTATTTCTCAACAAGACAACAACTACAAATTAGATCCTATTTG
ACGTTATGGCACAAAAAAAATCTTGTAATGAGAGTGAGATAGAGAAAAGA
AGAGGAAAAACTTTACATATCGCATCAACTAGACAAGTACCATGCTAATA
ACTCATTTCATTAATACGAACATTCACACTAACTGGCAAAAAAACAACAC
AAGTAAAAAATTTGAGACTACATATCATCAAAACTTTATATATTATATTG
GAAAACGCGAAAAAGGATTCTTTAATCATTTCTCCTAGAACAAATGAAGA
ACAAATCCATTTTTATCGTCTTGTATAGAAATATATAAAAACTTCTTTTT
TATTTTACAGCTTATGAATTAAACATCGATTGAACGTTTTTATCTAATTG
TAATACAATAACCCCTGCCTTGAATCGCTCACACTTCTTTTTACTCTCTC
TACATGTTTTTGCAAACGAAATGTCACTGTTCAATAATATGTGCTAAAGC
CTTTTGGTGTTTTAAACCAATCACATGCCTTGATTCACATTAGAATCCCG
CCTCTATTGTTTTTTCCAACGACTTGTCAATTTGTAGAGAGTACATAAAG
CTTATCAGAGGTGAAAAAGTAAACATGATGAAAACCGGGGGTAAAAGAGA
GGACAGAATTCTCTCAATTTCCCACTCTCCTTGGAGTTCTTTATCAAAAG
GCTAACAGCCACAAAATAGAGGGGAAAATGCTTTATTTACTTTTTTTCTT
TAAACTATATTTTTCACTATGATTGATACTTATGTAGAAAAGAAATAAAG
AAAAATAGAGTACATCACCAAGATGAAAAAAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004696-exon-sc0000047-1575043694:518762..519249 | TCONS_00004696-exon-sc0000047-1575043694:518762..519249 | Clytia hemisphaerica | exon |
| TCONS_00004696-exon-sc0000047-1575043694:516065..518691 | TCONS_00004696-exon-sc0000047-1575043694:516065..518691 | Clytia hemisphaerica | exon |
| TCONS_00004696-exon-sc0000047-1510915933:518762..519249 | TCONS_00004696-exon-sc0000047-1510915933:518762..519249 | Clytia hemisphaerica | exon |
| TCONS_00004696-exon-sc0000047-1510915933:516065..518691 | TCONS_00004696-exon-sc0000047-1510915933:516065..518691 | Clytia hemisphaerica | exon |
| TCONS_00004696-exon-sc0000047-1491911889:518762..519249 | TCONS_00004696-exon-sc0000047-1491911889:518762..519249 | Clytia hemisphaerica | exon |
| TCONS_00004696-exon-sc0000047-1491911889:516065..518691 | TCONS_00004696-exon-sc0000047-1491911889:516065..518691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:516065..519249 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007166 | cell surface receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0004888 | transmembrane signaling receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
BLAST of TCONS_00004696 vs. Swiss-Prot (Human)
Match: FZD4 (Frizzled-4 OS=Homo sapiens GN=FZD4 PE=1 SV=2) HSP 1 Score: 290.812 bits (743), Expect = 3.446e-86 Identity = 162/489 (33.13%), Postives = 257/489 (52.56%), Query Frame = -2
Query: 559 KCVPVKLDFCSGIGYNETIVMSSTAPNERTNKNSQEESLSELKIYELLIQRTQCSSKLRLLLCSVYLPFCHANHEKGIVACRPLCEEVKSKCQKHIEEFNLKWPDVLNCEKFPVENVEPDFCVPGNRHSSTEVPPASLKTKKTPKRIIPQTVTSTPAVRTTGLISKEKYCQVVYSRNVKNYIYVEKIQSCALECMKD-GIFTTQQKQLAERWISALTCICGILSVAAILCVLANYNETCFPERTIFFIAVCYFFYVVGYMIRIVYSREGVTCQRENGQHYLLV-DGSGNISCAATFLLVYCFSMVQSIWWVILCLTWFLSAGMRWATEAIRSKSFMFHSLAWGIPCCKTVIVLVWRKIDVNELTGICSIGNRYENLRALRWLILGPLFVYLIMATMFLLFGLICLFRLPDPNENQLMERKKNQYLLLPIGSYAALHTLFMTFILASYFYEYVNKGPWYNDPKSTGPSFAVFLTRIISDFSIGISASIWL 2019
+C P+++ C +GYN T PN Q ++ +L + LIQ CSS+L+ LCSVY+P C I C +C VK +C+ ++EF WP+ LNC KFP +N C+ G +P KTP I + C V N YI+V++ +C L+C D G+++ K+ + W++ +C I + +L L + + +PER I F+++CY Y + Y++R+ RE ++C E +L+ +G N CA FLL+Y F M SIWWVIL LTWFL+AG++W EAI S FH AW IP KT+++L+ R +D +ELTG+C +GN +NL AL ++ PLF YL++ T+F+ GL+ LF++ + + K + L++ IG ++ L+T+ T ++A YFYE N + + + AV + +I +GI++ +W+
Sbjct: 44 RCDPIRISMCQNLGYNVT-----KMPN-LVGHELQTDAELQLTTFTPLIQY-GCSSQLQFFLCSVYVPMCTEKINIPIGPCGGMCLSVKRRCEPVLKEFGFAWPESLNCSKFPPQNDHNHMCMEGPGDEEVPLP------HKTP-------------------IQPGEECHSV-GTNSDQYIWVKRSLNCVLKCGYDAGLYSRSAKEFTDIWMAVWASLCFISTAFTVLTFLIDSSRFSYPERPIIFLSMCYNIYSIAYIVRLTVGRERISCDFEEAAEPVLIQEGLKNTGCAIIFLLMYFFGMASSIWWVILTLTWFLAAGLKWGHEAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADELTGLCYVGN--QNLDALTGFVVAPLFTYLVIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEISNWALFRYSADDS--NMAVEMLKIFMSLLVGITSGMWI 495
The following BLAST results are available for this feature:
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