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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004698 ID=TCONS_00004698|Name=TCONS_00004698|organism=Clytia hemisphaerica|type=transcript|length=1085bp
tctatTTATTATTACTTTTGTAGCTAATAAGATGAAAAAGGCATTGGGAA
GTGTGCGCaggcattttcaaaaattagacaCAGATAAAAATCACAGGGTG
TCAGATTTGGGTGAATACTCTAAACCAAAGGATCCTAAAGATTCAGACTC
TGTTCGAATTGTTATCATTTCTGATACTCATGGTACAAAGAAAATCCCTG
AGATTGTACCTGATGGTGACATTCTAATACATTGCGGTGACTTCACATTA
CATGGACGCTTAGTAGAAGTTGAATCATTCAATGAAATATTGGGTAGTAT
TAAACATAAGTTCAAACATATTTTGGTCATTGCTGGGAACCACGAACTTA
TGATGGATCCATCTTTGAATGGTTCTAGACCAGAAGAATGTCAACGGATT
TTAAGTAATTGTACTTATTTAGAAGATGAAGGAATTGAATTGATGGGAAT
CAAGTTTTATGGAACACCATGGCATCCAGAGCACCGTGTAGGAGATGCTT
TCTCAGTCAAGTGTGGTGAAGAATGTCTTTCTAAATGGGAAAAAATACCT
TTCGACACTGATGTCCTCATGACTCATACACCGCCTTATGGTCTTTGTGA
TGAAGGTCACCATATTAAGCACGCTGGATGTCCAGAATTGTTGTATATTG
TCCAAGAGAAGATCAAACCGAGAATCCATGCGTTTGGACACATTCATGAA
GCATACGGCATTGCCAAGGATAAAACGACAACGTATCTCAACGCATCGAT
TTGTACACGCCGTTATCGGTCAGACAATTTACCGTTTGTCATCGATTTGA
AGCCTAtcgagaaaaaaactgtcgaTTTCTTACCGAATGTTCTGGATGGG
ATTGAAACGATTTAAATCAGGTGATGTTGATTCTCTTATCTAAGATTGga
gatttgtcaaaaaataaatatccCAATGGTGACCATGTTTCAGCATCCAA
TACGAAGTCGATTAACTCATTTATTGGATATTATTGGTGTGTGCAACCTC
AATTACGCtctttttttgtaagcataacATTTATAAGCATGCTTAGGCTC
AAACTCggtaaaaaaataagcataatacTAAGCAT Run BLAST on NCBI transcript from alignment at sc0000047:571155..578040- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004698 ID=TCONS_00004698|Name=TCONS_00004698|organism=Clytia hemisphaerica|type=transcript|length=6886bp|location=Sequence derived from alignment at sc0000047:571155..578040- (Clytia hemisphaerica)
TCTATTTATTATTACTTTTGTAGCTAATAAGATGAAAAAGGCATTGGGAA
GTGTGCGCAGGCATTTTCAAAAATTAGACACAGATAAAAATCACAGGGTG
TCAGATTTGGGTGAATACTCTAAACCAAAGGATCCTAAAGATTCAGACTC
TGTTCGAATTGTTATCATTTCTGATACTCATGGTACAAAGAAAATCCCTG
AGATTGTACCTGATGGTGACATTCTAATACATTGCGGTGACTTCACATTA
CATGGACGCTTAGTAGAAGTTGAATCATTCAATGAAATATTGGGTAGTAT
TAAACATAAGTTCAAACATATTTTGGTCATTGCTGGGAACCACGAACTTA
TGATGGATCCATCTTTGAATGGTTCTAGACCAGAAGAATGTCAACGGATT
TTAAGTAATTGTACTTATTTAGAAGATGAAGGAATTGAATTGATGGGAAT
CAAGTTTTATGGAACACCATGGTAGGTAATTCTAGTGATCATGCTTGTTT
ATTTTATTTAAAAGTATCAAATATTTGTCTCTCATTCAACTATGAAATTG
TAATCTTCTATCAGAAAATAGTAAAAAGAGCACATAACACTCGGCTAAAA
ACTTTCCCCTTCGTTGTTTTCTTTCTAAGGTTCTTAAAACTAAAGCCGTT
CTAGATCTCCTAACTTAAGGGTGGAATATTTTCATGTAAGATACTGCATT
AGCACATCAAAGTTTCTTCAAAAAGACTTGTTTGATTCTGCAAAAAAATA
GTAAATTCTTGGGAATTTCTGCACTGTAGCTTAAAGGTTTTGTTTTTAAA
TAAGAGTGTTATGGTTTGCTTACTCATCAGTTTTAATTTACAAGCCTTTT
GATATTCAATTGGCACGGATGTGGAGCAATATTAGTCAGAAAGAAGAAAA
GAAAAACATTTGTTTGCTTATGTCAGCACAATATAATAATAAGAAGACAC
TGTCCTGATATGAAACATGTGTCTGATATGAAAATTCCTGTGTAAAATAT
TTTAAGTATTTAATATCAATGTCTTATTCTCAGGCATCCAGAGCACCGTG
TAGGAGATGCTTTCTCAGTCAAGTGTGGTGAAGAATGTCTTTCTAAATGG
GAAAAAATACCTTTCGACACTGATGTCCTCATGACTCATACACCGCCTTA
TGGTCTTTGTGATGAAGGTCACCATATTAAGCACGCTGGATGTCCAGAAT
TGTTGTATATTGTCCAAGAGAAGATCAAACCGAGAATCCATGCGTTTGGA
CACATTCATGAAGGTATGGTTTTTGTTTTTACATTTTGTTTAATTCGACT
TTTTTCAAAGCTTATCTCTTTTTCTTTGCCACTTTTATCATTCATTTATT
CAGTATTTTAAACTGGAAAATCATAATTTATTCATTGGTCTTCTTGAACC
TCCTTTATTCTTACACCCCAATTGGGGGTAAATATAACTGACTGAAACTC
AATGGGGATATATAAGCTCGTTTATGAATGTTTGTGTAACAATCTTGTGA
ATTTGTTGACTGCTTCTTTAGAATTCTGATAGAACGAGAATACATTTGAT
ATTTTCATGGAAGAAATATGGGATGTAAAGTACAAAAATGTAAAGAAAAA
CATACACGACATTACTGCAAGCTTTGCAAGGATAAAGATTCTCATCATTT
TTGTAATCAATGTCCAGAAAGCCTTACACTGTATCATGGCACAGCTGAAA
ACTATCTTGGACCTATTACGAATTGGGGTCTTGAACCAAGTAAAGGTGGA
CGCTTAGGTCCTGGAATTTATTTTGTTAAAGATTTAGATGAAGCTAAAAG
TATCTCCAAAAACAAAGTTTCTAAAGGCCTCGGTGGTGGTAAAGATGTTG
TATTGCATTGTCGAGTGAACTTGGGTAAAGCAGTAGACTTAGGGAACAAT
TCTGGATGCACCTGGCAAGGAAATCAGAACAATTATGATTCCGCAACTTC
AATTCACCCTCCATGGGAAAGCTTACAAGGTAGATGGGTTATTTCATATG
CTTTCCCTGAATATTGTTTGAAAGATGAAAAGAGATGTGTTATATGGGGT
ATAAGCATCGGTGATGAGACTGTTGAAAAAGCTGATGGATATCGTTGGAA
AGAGACTTTAAACATTGTCAAAGATATGAACCAAGCAGCAGATAAACCAA
CCATTGATTCTAAAGTTAGAGAAATCACCAATTTTCTCGCCAATGGTACA
GGACATACAAATAAGTTTCTACCGAGAGGGACAAACCGAAAATTCAGGAA
GGCAATATCAAGCTTCACGTGTCAGGCTCGATTTCCTGATATATGTAGCT
TAGCTTGTAGATATTGGTACACTACATTGAAAGTAATTCTGTACTTGTTT
TATTTTTGTAACACAATTGCATCTATCGTTCACTTGTTTGCTGACAGTAA
TGATGAGACGAAGCCAGCTTTGATATCATTCACCGTTTTCTTCACTCTTG
TAACCTTATTGAAACTGCTTTATGTATTATTTCATATGTTTTGTAAAGAC
AAAATGGAAGAAAGTGCTTTTGTTATGTTGGCTGCAAATGTTTTAATTGC
ATTTTTCTTTGAAATGCCAATGTTAGTTTCACAAGGTTACGCTTTGAAGG
ACATTCCAAATATCGAATGGAAAGACCATGTTCAGGATATGATGATACAT
TTCGAGTTCATGGTGAACTTCTTTATCACATCATTAATTGATTTTGTACT
TTACAACATTGCTCTAAAGAAAGAGAAATCTTGTTAAATTATTTGTTTCT
AGCTATCATGTACACACCCATCGTCATATTTATCGCATGTGGGTAAAGGC
CACATTTTTGGTACACCTGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTCACAATATTTTGAGTAAATACTTTTTTCACTG
TTGCTCAGGTTTTGCATTTTTCTAAAAAGCATGTTTTGCGACTCTGATCT
TGTCCCTTCCGTTACGCGAATTCATTTTCAAGGAAATCTTTGTCAAATAG
CTATAGTTTATGTTAAATTCTCACAAGTTACCATTGGGATTACTCCAAAT
TCAATTTGCAAACCATTATCCTCCATTTTTGACATGTTTTTTCATTGACA
GTCCTTCCCATTGGAAATGTGCCTTGGTTTTGTCCCTTCCGTTACGCAAA
CATTAAATTGAACAGCATCTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATTTAAACTTTATATTAACAATGTGGTGGGAGTTATC
TCCTTGGAAAATTTGATGTCCCTTCCGTTATGGATGTCCCTTCCGTTACG
CCTTTTTTTAAAAGGGAGTGTTACAGGGACTTGGATGTTCCTTATAGTGT
TTTTTTCTTCAAAGCAAAGATATCTGAAGTTATTGCATTGTTGAAAGACC
TATTGTAGACTGTTCTCACATTTGCTACACTACAATGACTTCTTTTTATC
TCTTAACCCTTAGGCTCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAGCTGGGGTCCCATCTCCCT
AGGACTTTATTTAAAGGGAAAGAAACCAAATGTTTTTGAAAGAGTATAAA
ATTACCTTTCCAATGGTACCAAAACAAGTGTCTGAATCAAAAGCTACAAG
CTTTTACGCCATTTTGAAATTTAAAAAAAAATCATTGAAATTTTTCAAAA
TTTTCAAAACTACTGCGCGCTCAAAGGGTTAACCAACAAATTTTTGATTT
TTTTTTAAGACTCCAAACTGCTCAAAATACCTGAAAATGACAATTAGGAG
TTATTTGAAGTTGTTTTGACCATAAAAAATCTTTACAAGGGGTCTCATTA
ACCCTTAGGCTCCATAGGACGTGTTTTCGCGTCCTGAAACAGCCAAAATA
CCAAGTCCCAAAGCTTGGGTCTCAGCTCCCTAGGACTTGATTTAAAGGGG
AATAAACCCAATGCTTTTTGAAAGAGTATAGAATTACCTTTCCAATGGTT
GGTACCACAACGAGTGTCTGAATCAAAAGCTACAAGCTTTTACGCCATTT
TGAAGTTTCAAATTTCAAAAAAAAATCATTGAAATTTTTCAATATTTTCA
AAACTACTGCGCGCTCAAAGGGTTAACCANNGGTCACCTACAGTGGGTCA
CCTAAATTTTAGGGATCATCTAAAACTTGGGATGAGGCTTGGATGGCCCA
AAACAGAGCTATTTTCAAATTTTGAAAATTTTGAATATTTCAGAAAATTT
GTCCCTTTCGTTACGCTTATTCTATACAATTTACAATTTTTAGGAGTATT
TGTAAGTTTATATAGTTAGTTCTGGTTAGTTCTATCATTTTAGGTTAAAT
GACTATTAAAATTCAAACTATCTTTTGAAACAAGTTTTTTCCTAGTGAAG
ATGTTAATTAAAAATTTGAAAGTTGTCCCTTCCGTTACGCAAATTAGGCT
ACCCCTCCAACCCGAAAATGTTAATTCATGAAAAACGATTAGGAATTAGT
TTAAACACTTTGTAGAAACATTTTAAGAGTAAGTTTAGTCTTATAAGTGT
CTCTTTTTTATAGAAATAACAAGTTTTTAGTTATTGGTTGAAAATGAGAA
AAAAATCAACCACAACAACTTCTAGGGTCCTACAGTTCTGCAAAAAGGTA
ATATAGAGGAGCACATACTTGATTATCATCATAGAGGTATATACACATCC
AAATAAATAGGTTTTAAGCAATTTTGAGGATGAAGTTTTTTTAGCGTAAC
GGAAGGGACAGGTGTACCAAAAATGTGGCCTTTACCCATGTTCTATCTGT
TATGCTCCCGTTTATGTGACACTAGCTGGATGGGTTTATTTACCTGATGC
TTTGATTGATCTCTATGGAGGACAAATTAAAGGAGGTGTTACGTTTTTTT
TGCAAATATCAATGTATGTTGGAGTTTTTGGGCTTTGGACTTGGACAATT
TTTTTGGGTATTTTAGCTCTTTTGATGATTATTGTATTACTTTGTTGCTG
TTTGTGTACAAGCACCGCTATGCGAAATTAATAAAAATGATATTAGTATA
TTATGATATAGTATTTGGGTCATAGAACAATTTACCGGACAAATTATATA
ATTCCAGTGATCTAAATTTTCCATTGAATTATCATATTCCCAACTTCAGT
TGATCAGAATCTGACAATGTTTTAGTTTTAGCTCCAAAACGAGACTCCAA
AACTTTGGGGGTAGGCTTAAGACTTTAAAAATGATTGTGTTTCGGCTGAA
ATTTGGCCCACTAGTTCACTGGGTGAATATCTGAGGGTGCTTTTTTCATT
TTTTGGGACCTGGGGACAAGTTTTTCATCAAAACGAGGCTTTTGTTATTG
GACTTATCACCTATCGATTATACAATTGGGCCTACGAATGATTGAAAAAT
GCTGAAGTTGAGCCCAGTGCGGTCAGCACGATCGTCAGTTTGTATATTAT
ATTATAAAAATATGCGAGTATAAATTAAATTACTTAATCGATACTTTGTA
TGATATTTTAATTAATTGGCAAAAAATAATCACCGGTTAAGAATTTCGTC
CATTTTAAATAATTTTGTTAATTTTTATGAATAGTTTAGTTTTTAACCAA
TGTTACGTCGGCTTTTTAGAGCAATCATAAGGCTGGAAAACGCCAATAAA
CTGAGCAATTATTGCAATTTTCTAGGTATAATTTTGTAAAATGAAACTGT
AAAATATAGAAATGAAACTTTGAGTATGAAATTAACTTAAATTCTTTCAT
AGCATACGGCATTGCCAAGGATAAAACGACAACGTATCTCAACGCATCGA
TTTGTACACGCCGTTATCGGTCAGACAATTTACCGTTTGTCATCGATTTG
AAGCCTATCGAGAAAAAAACTGTCGATTTCTTACCGAATGTTCTGGATGG
GATTGAAACGATTTAAATCAGGTGATGTTGATTCTCTTATCTAAGATTGG
AGATTTGTCAAAAAATAAATATCCCAATGGTGACCATGTTTCAGCATCCA
ATACGAAGTCGATTAACTCATTTATTGGATATTATTGGTGTGTGCAACCT
CAATTACGCTCTTTTTTTGTAAGCATAACATTTATAAGCATGCTTAGGCT
CAAACTCGGTAAAAAAATAAGCATAATACTAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004698-exon-sc0000047-1575043694:577570..578040 | TCONS_00004698-exon-sc0000047-1575043694:577570..578040 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1575043694:576778..577007 | TCONS_00004698-exon-sc0000047-1575043694:576778..577007 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1575043694:571155..571538 | TCONS_00004698-exon-sc0000047-1575043694:571155..571538 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1510915933:577570..578040 | TCONS_00004698-exon-sc0000047-1510915933:577570..578040 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1510915933:576778..577007 | TCONS_00004698-exon-sc0000047-1510915933:576778..577007 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1510915933:571155..571538 | TCONS_00004698-exon-sc0000047-1510915933:571155..571538 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1491911889:577570..578040 | TCONS_00004698-exon-sc0000047-1491911889:577570..578040 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1491911889:576778..577007 | TCONS_00004698-exon-sc0000047-1491911889:576778..577007 | Clytia hemisphaerica | exon |
| TCONS_00004698-exon-sc0000047-1491911889:571155..571538 | TCONS_00004698-exon-sc0000047-1491911889:571155..571538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:571155..578040 - |
Blast
BLAST of TCONS_00004698 vs. Swiss-Prot (Human)
Match: MPPD1 (Metallophosphoesterase domain-containing protein 1 OS=Homo sapiens GN=MPPED1 PE=2 SV=3) HSP 1 Score: 197.978 bits (502), Expect = 1.872e-59 Identity = 106/241 (43.98%), Postives = 142/241 (58.92%), Query Frame = 2
Query: 134 PKDSDSVRIVIISDTHGTKKIPEIVPDGDILIHCGDFTLHGRLVEVESFNEILGSIKHKFKHILVIAGNHELMMD---------------PSLNGSRPEE---CQRILSNCTYLEDEGIELMGIKFYGTPWHPEHRVGDAFSVKCGEECLSKWEKIPFDTDVLMTHTPPYGLCDE-GHHIKHAGCPELLYIVQEKIKPRIHAFGHIHEAYGIAKDKTTTYLNASICTRRYRSDNLPFVIDL 799
PK R V +SDTH ++ P +P GD+LIH GDFT G EV+ FNE LGS+ +++K +VIAGNHEL D PS++ +PE Q +L+NC YL+D + + G + YG+PW P G F++ G+ L KW IP D+L+TH PP G D ++ GC ELL VQ +++PR+H FGHIHE YG+ D TTTY+NAS+CT Y+ N P VIDL
Sbjct: 84 PKPPGYTRFVCVSDTH-SRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYK--IVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWF-YGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDL 320
The following BLAST results are available for this feature:
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