TCONS_00004740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004740
Unique NameTCONS_00004740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004740 ID=TCONS_00004740|Name=TCONS_00004740|organism=Clytia hemisphaerica|type=transcript|length=1685bp
CATTCATCGTTCACACAAGTTTTGAATATTCATTAAGCTTAATAATATGC
TGCTCGACAACCAATGAAAATGTTCATATTTTTGGATCAACAATAACAAA
TTGATATTGtattcattttttaaatagaaTTTCATATTTATTTCAGAATT
TAGTTTTATTCATTGATTGTCTTTTGTCATAATCAGAATTTATGACTCCT
GAAAAACACTTTTCAAGCTTCTCTTAAAGAGGTATAAGACTTTACGGTGT
TGAGTCATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGC
AATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTA
CTAATGAAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACC
ACTGCATACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGC
ATGCGTGTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATC
AACCCTGGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAG
TATGTAGATGCTGAAGGGGTCGACCACTATGACACAGGATGGACTTCGTT
GACTATCATCACAAACAGTGCTCAAAATTCTTGCTTAATATCCGGAGGAA
GAAGTTGTGAGTTAGGAACCAGTACGAATTGGATCCATGTTCATGTAGAG
ACTGATTGGAATATCTGTCTTACACATCGGGCCGCTTTGTTCAACTACGA
CCATCAAACAGGGCGACTCCACCACCACTGCACTGGCTACCCAGTGTGTG
TTGATTTCAGTACCAAATGGGTGCAGATCAATAAAAACGGATGCCAGCAT
TATCCTGACATTGAGCACTTCTGGTTTACTTGGAGGCGAAGCTTTTCTGG
ATATCTGTGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGG
TACAAGGCGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCT
GAAAGACAGTTTATTTTCAGATCCATCCCTCACGGTCCAGTCTACGTAAC
AGCATTCACCGGTCTACCTAGCTACGACATAGACAGTTCCTGGAACTCGT
TTGTTGGGAACGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCA
TTCCGCCAACAACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATG
TGCGAGTTTAACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATT
AGTGATTGATATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCG
ATACATACACCCAACAATACAGTGGGCACCATCATTTGCTTAAAGACAAA
CAATACTATGTCGAGTTATTGCTTCGGGAATGGGGTGGAGGTGATCATGC
CGAAATCGAATTTCTTGAACCCGATCGGAATACATGGATTCCGATGACAT
CCCGATTTCTCAGAAAGTGCCGGTAATGCAATGGGTCAAGAATTGATATA
TGAAGGATTCATATTAtgcacttttgaatttttgtttcgaaataaAGGGT
AGGCCTAAAACCTTTTACTTGAAATTGGTCTTTGAAATTCATCCAAGGAC
CTAAATTGTTTGTCCCATATAGAAAGATGTATGTCAGACAAAATCAAGTT
CCCCTAGAATTTATCCAGATCTCTCaagttttcat
Run BLAST on NCBI

transcript from alignment at sc0000048:116831..122836+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004740 ID=TCONS_00004740|Name=TCONS_00004740|organism=Clytia hemisphaerica|type=transcript|length=6006bp|location=Sequence derived from alignment at sc0000048:116831..122836+ (Clytia hemisphaerica)
CATTCATCGTTCACACAAGTTTTGAATATTCATTAAGCTTAATAATATGC
TGCTCGACAACCAATGAAAATGTTCATATTTTTGGATCAACAATAACAAA
TTGATATTGtattcattttttaaatagaaTTTCATATTTATTTCAGAATT
TAGTTTTATTCATTGATTGTCTTTTGTCATAATCAGAATTTATGACTCCT
GAAAAACACTTTTCAAGCTTCTCTTAAAGAGGTATAAGACTTTACGGTGT
TGAGTCATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGC
AATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTA
CTAATGAAGgtataaaatttaatttaatttcatatttctttccTACTACT
AGCCTTTAATTTAAGCCTTTATAATCCGAATCTTTTGAAACTAAATTGAT
GATTTGAATCGTTCTATAATTCGAAGTAAAACAACAGTCCCTCATgttta
atttcttttgaaatccgttttttgaaattcgaatcctTCTTCAAATTTGA
AGGGAATTCTTGGTCCCTTTAAAGATCGAATTAAGGAAAGTCAACTATAA
CTCTATAATTCGACAAAACATCCGGTGTTTTTTTCGGTCATGTTAGCTCT
GACTGAATGTGAGCTCTAGTTTGTTAGACGACCAACTTTCTGCCCTGTCC
ATTCTAATTGTTAGAATAGGCAAAAAGTGGGCACATAGTTTACAGTCAAA
ATATTTGCTTGAAAAGGATTGAAAGAAgtcaatgcattgactttagacag
cccactttatgctcACTTCAATCCACAATTAAAATAGGAAAGgtgaaaag
tgggccgtcttaACTAGAGCTGACAGCAGCAATGTCTTAGTTGGAATTCT
GATGAAAAATGAATGGATATATGAATTAGTTGAAGTTTCCACCCTAATCA
AAACTCATGCTCataagaggcccccccagcggttggcgtgatggcgtgat
ggagggtttttcgtggcgtgatggcgtgaaatgttgaaaaaaacggcgtg
atggcgtgaaaatgaagtgccggcgtgatcgtgaaatcgagtttttttag
gcgtgatggcgtgaaatttgcagttNTAATTCACGCaaattcacaattaa
tgcccccccccctcaagttgcttgtacttttaaaagatttccattatttt
tacaggaattatttttcaaatttaattgaaatggatcctaaaatagcact
ttgaacccttcaaaattcaaaaattttctccgttacCCAACGGGGCTTTG
TTAATTTACTCAAACCGGTGCCCTTTGATGTAACCAGTTgtccaacaatt
tttgatatgcataagtcaagattacgtcatttttcctatcgaaaacaccc
gaaaaagCTGGAAATTACCCctgtgtattactaaaaatagaaaaacagag
gttaaatttcttccagatttttcgggtgtttccgataggaaaaatgatat
aatcttgacttactTACGCGTATGAGAATGCCGATGAAAAACTGANCGGC
CCCGACTGTGGTGGGGCCTCCTAtaaattagatttcattttaaaacataa
aagaaacggtgcaaacagttctaTTCATATGCCATACATCCTTGTAACTT
CCGATTGTTTTTAGCAGGTGCTAGCTAGTCTTTAAAATAAAGccgaatgc
tatgagagggtcgaaaattgaaaattttccccgtcagcgcaaaccatggt
tgcgcttcctccgtaactaacatttCCCTCTCTTTCTTAGATNGtttata
taacaaaaattaTGAGCATGAAAACTAAATGTAAATTTTAaaggcgtaat
ggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaatttttcag
gcgtgatggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaat
ttttcaggcgtgatggcgtgaaatcgaaaaaaaattggcgtgatggcgtg
aattttgggtccgctgggggggcctctcaTAAAATTCATCTTCGTAATCA
TATAAGATGGACAAGTGAAAAATTCGTAGCTAATATTAAAATCGACGGTT
TGGCCACCTCTTTTGGAAAACTATAAAGCTTCTAAATTAAAGGCATTGAA
GTAAATTTGACAAACTTTTGTCACCGATTCAGTGAGACACCCGACGGGAA
AAAACCCTACAATCTAAGCCCCTCTGggaaatttactttgatttcatctc
aATTAGAATTTCAATGTAAAAAGTtctactccaaaaccatccccactgga
ttgtTTGAGCTTAAATCAATAGAATTTCTACctacatttgaaattcaata
aaaattctAATCCTCGCTGTGGGGAAAGTTTCACCGGGGATGTGGGGCAG
GGGTTATTTGGAGATGAATTGTGAAACAGCATTCTGTTTACATTGGTATG
ATAACAACTTGCTAAATTTTCAATATCCTCAATCCTTAATCTTCAAACTT
TAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCA
TACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGCATGCGT
GTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCT
GGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAGTATGTA
GATGCTGAAGGTAGCTTGTTTTTCATGAAAACATTTTGGGTTAAATCATT
AGTACTCTTAAAAAACACGTGGCCTTCCAGCTCTCATACTTTTTTCGTAA
AATTACCAAATAAAATTGAGAATCAAATGAATATTTTCAGTATCGGAAAT
ATATACGGCCGTTGAGAATCGGTTTCAGCCTTCTAAAGGGttaagaaaac
aacaaaattaatGGTCAGAATCTACACCATCGGTTAGGAATAAAGTCCCT
TTTTCTCTaatttagtctctctaagggcaACGGTTCGTGGTTCTGGTCCA
CACATACGCGACAATTTGCAGCCCTCTTCATGGGTATTGTTACTCTGAAA
AGCCTTTATTTAAAAGGTGGAATATTCATTTCTTTTTTCGTTACAGGGGT
CGACCACTATGACACAGGATGGACTTCGTTGACTATCATCACAAACAGTG
CTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACC
AGTACGAATTGGATCCATGTTCATGTAGAGACTGATTGGAATATCTGTCT
TACACATCGGGCCGCTTTGTTCAACTACGACCATCAAACAGGGCGACTCC
ACCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGG
GTGCAGATCAATAAAAACGGATGCCAGCATTATCCTGACATTGAGCACTT
CTGGTTTACTTGGAGGCGAAGCTTTTGTaagttttgttaatttcataAAC
CAAGCCCACACGTCACACTTATTTAACAAGTTTCACACCATTGTGACACT
ATCATGCTCACAACTCTCTGAAACTTTTTTCGTTCTTACAGCCAATGAAT
TTTTCGTTCGTCTAAGTTTATCGTTCATAACATTAAGGACTGACTTAATG
TTacagtctctataactcgaacacgcaaggagaacgcaaatttgttcgag
ttaaaagaACATTCGAGAGCTTGAGTAGGGTTTATAAGgtatttttaact
gaagggactagaaaacttattcgagttaaggagacattcgagttaaagag
tttCAAATTAAAGAGACTCCATTATCATTTATTTTCAAGCTGGATATCTG
TGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGGTACAAGG
CGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGAC
AGTTTATTTTCAGATCCATCCGTAAGTATCTTTTACATTTCTTAAGTAGC
GATGACCGAGGGATCAAGGCATCAGTGTTTGAAATCACGGGCTCCCGGTT
TGAATCCCTGCTCTTttcaatgttccgttcagttcataaaTAGCCAAATC
GGTTGACTGTCTGGCCCAGTAAATACAATCaaaaaagtcctagattactg
ggctatccacgtaaaatattgacTTTAAATCATTAAAAGTCAGAGAAAAG
TCTTCTGTTTGTGACTTATGTACCATATATTAACTGTCGTTTAAGGTTGG
GACAATAATTTTTGACATCGTTTTACGGTTTTGCTCTCATAGTTAGTATT
GAGTCTGATAGCCTCGAATTCAACTATCATTGGTTCTTTTTAAAGCTCAC
GGTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAGCTACGACATAGA
CAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCTG
ACTGGTTCGGATACCAAGATGACTTCCTCACACCTTCAAGTGAATGGTGA
GTTATCTGTTTAAATGCCAACTCTAACTTCGTTCGCCTGGTATCATCGGC
ACCGGTATTTTTATGCTTACCGATAGAGCCGGATAATCTCCTGACTTTAC
CAAAGTAGTTTAAATAAAGCTTGTTATACACAGGGACGAGGTTGAGCCAA
CTCACTTAGTTTCTGCAACTCcaatttatttcaaaacataACGTATCCTC
CATGCAGAGGAATTCCAAAGAGGACTGCacaaatccgtcaaaaataaccG
GAATCCATCGGGGTTGATTTAAAAATCTGGTAAAAGTCAAAATCACAGGA
GCTTTAAACCTAAAAGTTGAGACAAACCTTTGACTTCGCACTTTAAGGTA
TCGAACACTCTCTCAAATAATAAATTCATGCTCAAATGATCAACAACGAT
ATTGCTGATAATTCTATCACTTTTTCTGTCGATCATTTCCTTCAATCACT
AGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCATTCCGCCAAC
AACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATGTGCGAGTTTA
ACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATTAGTGATTGAT
ATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCGATACGTAAGT
AATATTCacgacagctgattggttataagtttcaaccaatcagctgttgt
tTCCGTGGAATATCATTTTTCAgcagtaaactgttgaaaattccatcgaa
aatcactgattttcaaatatattaaatatttcactgaagttttaaatcta
gagtaaaacaatggataacttttgttttcgaatcatacctaaaattcttt
aaattgagaaataatgataaaaaattaacgccgcttttaggttaaaattg
taaaatattggTCCTTTTTACACCAGCCTTTTTAACGCCACGAGCACAAC
AATAACGCCAATAAAGGTTGGTGTTCCGATAAATGACCGATAAAGTATCc
aagaaaattcaattttatcttttctattttttgatattttaggcGCTAGA
AGAACCTTTTTGGCTTTTCATAaatgaattatttttaattgtCGATTGAT
CTCTACAATTATTTGCAATTAGTATTCACCCCTTAAATTTTcctaattta
aattttaaaatttgtttaacTTCAGATACACCCAACAATACAGTGGGCAC
CATCATTTGCTTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGA
ATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGA
ATACATGGATTCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAATGC
AATGGGTCAAGAATTGATATATGAAGGATTCATATTAtgcacttttgaat
ttttgtttcgaaataaAGGGTAGGCCTAAAACCTTTTACTTGAAATTGGT
CTTTGAAATTCATCCAAGGACCTAAATTGTTTGTCCCATATAGAAAGATG
TATGTCAGACAAAATCAAGTTCCCCTAGAATTTATCCAGATCTCTCaagt
tttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002683XLOC_002683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004740-exon-sc0000048-1491911889:116831..117189TCONS_00004740-exon-sc0000048-1491911889:116831..117189Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:116831..117189TCONS_00004740-exon-sc0000048-1510915933:116831..117189Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:116831..117189TCONS_00004740-exon-sc0000048-1575043694:116831..117189Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:119334..119540TCONS_00004740-exon-sc0000048-1491911889:119334..119540Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:119334..119540TCONS_00004740-exon-sc0000048-1510915933:119334..119540Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:119334..119540TCONS_00004740-exon-sc0000048-1575043694:119334..119540Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:119927..120256TCONS_00004740-exon-sc0000048-1491911889:119927..120256Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:119927..120256TCONS_00004740-exon-sc0000048-1510915933:119927..120256Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:119927..120256TCONS_00004740-exon-sc0000048-1575043694:119927..120256Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:120620..120751TCONS_00004740-exon-sc0000048-1491911889:120620..120751Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:120620..120751TCONS_00004740-exon-sc0000048-1510915933:120620..120751Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:120620..120751TCONS_00004740-exon-sc0000048-1575043694:120620..120751Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:121126..121209TCONS_00004740-exon-sc0000048-1491911889:121126..121209Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:121126..121209TCONS_00004740-exon-sc0000048-1510915933:121126..121209Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:121126..121209TCONS_00004740-exon-sc0000048-1575043694:121126..121209Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:121733..121924TCONS_00004740-exon-sc0000048-1491911889:121733..121924Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:121733..121924TCONS_00004740-exon-sc0000048-1510915933:121733..121924Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:121733..121924TCONS_00004740-exon-sc0000048-1575043694:121733..121924Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1491911889:122456..122836TCONS_00004740-exon-sc0000048-1491911889:122456..122836Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1510915933:122456..122836TCONS_00004740-exon-sc0000048-1510915933:122456..122836Clytia hemisphaericaexon
TCONS_00004740-exon-sc0000048-1575043694:122456..122836TCONS_00004740-exon-sc0000048-1575043694:122456..122836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:116831..122836 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0512287	0.0618052	0	0.04051	0.0250891	0.0974084	0.0160081	0.555534	0	0	0	0	0	1.40477	0.632722	0	0	0	0	0.000743993	0	0	0	0.0309371	0.0271812
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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