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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004752 ID=TCONS_00004752|Name=TCONS_00004752|organism=Clytia hemisphaerica|type=transcript|length=698bp
AAAGAAAGCTGGGCACAAGACAACATCATATGATTTTTtTCTTGGTTGGC
TCAGTGATGTATTTTCCTTCGAACAAGCAAGCGTTCTCTTGTTCGTTGAA
CATCAAGTTTCCTGGACAAGCAACACATCCAACAGTGActccttcccaac
atccaatgTATTGTCGTGATTGGTGTGGGTCAGCAATGTTTCCTGTGAAA
TCTGGTCCACGTTCTGGGCATTTGTCTGGACATTCGAAAGTGGTGGCTGG
TTCCCATGGTTTTGTGGTGACACATTCGTCAGCAGAAGAATACAAACATT
GGTTGCATCGTGGACTGAACTCCAAACTGAGTGGCCAGCAAGCTTGACAA
TAAGCATTTCCTCCAAGACATTGTAAGAAGTAGTTTTTGTTGAGTTTGTA
GGTTGATGGATCAGAGTAAGCAAAGTTTCCATCAGCTTTTCCTTTACACA
AAGTGCTTGGACAATCAACAGCTGGTGGTGTGGTTCCAGTGATTGGAGGT
GCAGTCAATCCATTGCATGCTACCAAAGTTGTTGCCAAGAGGATAAAAGT
CTTCATTGTTGTTTGTGTTGAGTTCTTCTTTACTGAAGTTGCTGTTCTTC
TTTGAAGAGGAGTGAGTGAGTGTGATTGATCAAGTCGAAAATCAGTGCTT
TTATACTGAAACACATCCTGTTTGTTATACAATCACATTTTGTTATAC Run BLAST on NCBI transcript from alignment at sc0000048:318729..322253+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004752 ID=TCONS_00004752|Name=TCONS_00004752|organism=Clytia hemisphaerica|type=transcript|length=3525bp|location=Sequence derived from alignment at sc0000048:318729..322253+ (Clytia hemisphaerica)
AAAGAAAGCTGGGCACAAGACAACATCATATGATTTTTGTAAGTTTCTAT
GATATTACTTAGATATGATCCTAATGATTTggttagaaaatttaaaaaca
ttaagaAAAACTTCAGCATCAGTTTAGCTGGTATTAGATCATTTactgac
aaaattttgggttgTAATTGGTATAATAGGGCCAGAAAGAAGGAGGTTAT
AAAATCTCTATGTGTACCTAATAACAATCTTTTTTGCTTGTAGTGTCCGA
TCCAGATTTTGATGTGATTTTCAATAAGGGAAAATTTTTGAGTCATGGTA
TATGTTATGTTAATCGCTTTGGATGTTTTTCACTAAGTTTTGATGTGTCC
AGatggtaccgtgagtggtcctaaatccgacatccctgcctaaatccgac
ccctcaaataactgctatgaaaaaaattctatgtttacaaaaatgtcctC
TCCAAGTTGagcaataaactattgcaagaactctggaaacaaaacatcta
acaaaatgacaataatgtcaagatgtcaattaatgtgatcaataAAATGT
GAGTTGTagaaataattacctctattattctgaatccattgctcgtgttt
aaaacgtttaaCAATTTNtgtaaaaataattacctctattattctgaatc
cattgctcgtgtttaaaacgtttaacaattttgtaataaaaaattatgtt
ttgtataagaagcaattgttgttatttggttcaattggttcagtgtatca
aatctctcagtttagttgacactttggtatcttcattgtgtcacagcgaa
aggtttgtttttattttagtttgtatctttgaaagaccccatcggattta
ggcagggctgtcggatttaggaccactcacggtactaagcgaacgttcga
ttgtgatcgaagtaatcaataatgatcgataataGTCGAGGGTGGTCAGT
GACCACCTATCGATTTTATCGGTGAACGAATACTCACTCTACTCTAAATT
ATGGCATTTTCTCCAATCATTATCGATAGGTTCGATTACTTAcaatcata
ttgaatacctttgATTGTATTGAATATGTTTCCTATAGCAGTGTGTCAGA
ATCTGAAATCGAGTTTATCTCGCCAATAAAAATATGCAATTCATGCGCGA
AAACCACTTTAGTTTTCTCCAACAAATCAAAATGCGCGATATGAGTTACT
GTACTTGAGAAAACCCAGGGTGAACGTATATACACAAAATGGCAGAGTAA
TAACTGAAGGTCATGCTTATTACCATGAGtatcagaggccaagttttcaa
agagaaaatattaatttattcgagctgtgatactcacggtacatGCTTAT
GgcacaaattttttgaaattttggtacttgaaatttgattgtttaTTGAT
AAATGGTCGTTCGATTACTTTGATCATTATATATCAATTACTTCgataat
caaatttattgattagtaccgtctggttgTGTGATGACAAATCTTACCTT
TTTATGATGTGTGATGGCCTGAAAAGGGATGCtgcttgaggggggggggg
acttcattaaactttttttttctgaccctgCAACCGGGTCattatgggtt
catctatatggttcatcataaagaaaatcaagttgagcGTTCAAGCTATC
AATAGTTGTTTGATTAGATATTCCTGCTTGTAAATCATATTGTaaatatt
cagggcttacttcatactgtttgtcatttgtacataaaagttatctttaa
agttctatttcaatgatcttaagttatcaaaaatagcaaaacaaataatt
tttccggccggctgcatgagagcttttttccttcacccgcattccataaa
cactactttttttattttggcctcattgcaaaaaattttcgaaaaggtcA
ATGGCCAAATGAAATACCAaccaaatgataaaataatctTTTGAAAGTGT
TTGTAAAATCgacatgttttaaaaatttaatccagctttaaaatttccaa
aattcacTAACCACCATAATAAAGAGATTATATaccaacaaaagcctttt
aaacTTTTGTTGTTTCAAATTATAAATTGAAATGAATATTGTTCGATGCT
TCGAAatcaatcttttgatttttttccaaatttcttaATTTACCACCAGT
TTAACACTCCTTCTCACAtaccttctcacagacccactgagaacctttcc
cactggaaaattagcCATAATATCGtacccagtggaaaattatactctaa
ctTTTGTCCTCGCCGAAAGtgatcagataagcaaatcctacTGCAAAGTA
TTGTGCCTTTTTtcaatccccactgaattttctggctcgaaaacaattga
attcaaatccccagtcataaaatACATAAGAATATCtacccccatcgagt
tttggtctgttatttttacccccatcCCAATGGCTGAAAAGATCCTTACA
GGTTTCTGAGAAGTTGGTGTGTTCTTTAAAGAGTTCAAAAGAAGACAATG
GGCAAAATTTCATACTTAACAATTTTGATGTTATTAGTACTATGAGAATT
CACTAAAGAACTAGCACAATCAATTCTTTTTGGGACACAAAGTAAAGCAC
ATTTTTTAGGATGTATATAGCATTATATTTGAAAGAATTGATCTAAGGGA
TGTATATATTCATAGATAAAGATAACAGCTTTAAAATACTATTTATagtt
ataaataaatattattatgtataatttcaaaacaagtgtTTACCAGCAAC
GAGATGTCTGAAAGCGATAGTGAAAGATGAGGATAGtagataatataata
taatagtGGAAAAAGAAAGTGTTCAGataaagttttcaatttttatttta
aataattttctttagtTCTTGGTTGGCTCAGTGATGTATTTTCCTTCGAA
CAAGCAAGCGTTCTCTTGTTCGTTGAACATCAAGTTTCCTGGACAAGCAA
CACATCCAACAGTGActccttcccaacatccaatgTATTGTCGTGATTGG
TGTGGGTCAGCAATGTTTCCTGTGAAATCTGGTCCACGTTCTGGGCATTT
GTCTGGACATTCGAAAGTGGTGGCTGGTTCCCATGGTTTTGTGGTGACAC
ATTCGTCAGCAGAAGAATACAAACATTGGTTGCATCGTGGACTGAACTCC
AAACTGAGTGGCCAGCAAGCTTGACAATAAGCATTTCCTCCAAGACATTG
TAAGAAGTAGTTTTTGTTGAGTTTGTAGGTTGATGGATCAGAGTAAGCAA
AGTTTCCATCAGCTTTTCCTTTACACAAAGTGCTTGGACAATCAACAGCT
GGTGGTGTGGTTCCAGTGATTGGAGGTGCAGTCAATCCATTGCATGCTAC
CAAAGTTGTTGCCAAGAGGATAAAAGTCTTCATTGTTGTTTGTGTTGAGT
TCTTCTTTACTGAAGTTGCTGTTCTTCTTTGAAGAGGAGTGAGTGAGTGT
GATTGATCAAGTCGAAAATCAGTGCTTTTATACTGAAACACATCCTGTTT
GTTATACAATCACATTTTGTTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004752-exon-sc0000048-1491911889:318729..318766 | TCONS_00004752-exon-sc0000048-1491911889:318729..318766 | Clytia hemisphaerica | exon |
| TCONS_00004752-exon-sc0000048-1510915933:318729..318766 | TCONS_00004752-exon-sc0000048-1510915933:318729..318766 | Clytia hemisphaerica | exon |
| TCONS_00004752-exon-sc0000048-1575043694:318729..318766 | TCONS_00004752-exon-sc0000048-1575043694:318729..318766 | Clytia hemisphaerica | exon |
| TCONS_00004752-exon-sc0000048-1491911889:321594..322253 | TCONS_00004752-exon-sc0000048-1491911889:321594..322253 | Clytia hemisphaerica | exon |
| TCONS_00004752-exon-sc0000048-1510915933:321594..322253 | TCONS_00004752-exon-sc0000048-1510915933:321594..322253 | Clytia hemisphaerica | exon |
| TCONS_00004752-exon-sc0000048-1575043694:321594..322253 | TCONS_00004752-exon-sc0000048-1575043694:321594..322253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:318729..322253 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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