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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004767 ID=TCONS_00004767|Name=TCONS_00004767|organism=Clytia hemisphaerica|type=transcript|length=3560bp
CCAATAGAAACACTATCTCAATTCGAATAACCGAATTATTCGAATAAGTA
CAAGTTCGTATAGCCAGGAGTCTACTGTATACGGTATACTAACAATTCCC
TAACAATTTTAGTCCAGAAGTATCAAAATTCCTGATCAGAAAGCCGTTTA
CAACAAAGCTTCAGATGGCATCAGTTATATtctcactttcactttcatca
tTTTCAGACATAATGGCACACACGAATGAAAGACATATCCACCTGATACT
ATACGATTTCGGAAGTACAGATGCCAACttgaaagagattttacaaCAAG
CAACATTCGAGCATTCTTACATGAGAAACGAACAAAAATTCAGCAAAGTG
ATTGGTTTAAACAGAGCAGTCAGTTCTATCCAAGAGGAAGaccccatcat
ttttattttggaTTTACAACTTCAACTACCGATATTCCTGTTTGATTATA
TTAGAAAGCATACATTCCGTGAAAAGACAGTTTACGTTCCAATTCTATTA
CGATTGGGTTGCGGCGAACATACGGCATTCACAAAGCTAACTGACCAATC
AATTTGGCAAGAAATTGGTTATGGGATGATCGCTCTATtcaaatctgatt
ggttaaaaattgGAGGTATGAATGAGACTCGATTCTCACAGAAATGGGGC
GGGGAGGATTGGGAATTTGTGGATCGTGTATTGATTAATAAAATGGAAGT
CATTCACCATCGGTTACCTGGTTATTATCATATCTACCATTCCAATAAAA
ATACATGGGATGGaaccaaaaactgaaaaaaagaacCGAGAAGTAGCACT
GTTGACTGTCGCTAATTCGAATTCGAACAGGAttaatagatagatagata
gatagatagatagatagagtcgatatctAACGTGGATAGCcaagtaatct
aggacttttaggcagtctttcgattgttttcacggggtccacggccagcc
agcttggctatctatgaactgaacggaacattggaaggagcggagAACCG
CGAATCCCTGGTTTGAAACTGAAGTTTATATCTGCAAATGCGAGATCTAA
GTAAAACACTATAAATACCAACAACTTTTAGATCCCAGCGCTGGTCAAGC
TAAAAAATTATTGCCGACCAGAATAAATAGTCCAGATTCACTAATTTTTC
TGATTTCCCCTTTAAATATCAGGTTTCAGTATTTCATGTTAATTTGTAAG
CGTTTGCAAGGTACTTTTGGGCTGACAAATCTGATAAAAAGCAGACTCGT
TTATTTGAAAGATCAGCCCAGATAATTCGAATCCCGGACCATTCTCCGAC
CGACGATTCCCCGACAGACAACTCCCCGAACGGGTAATTCCCCGAGCGGA
CAACTCCCCAACAGGACAATTTTGGCTCGGGAAGATGTCTGTCGGGGGAT
TGCGCGGTTGGGGAATGGTCAGTCGGGGAACTGTCCGGATACTGATAATT
CAAGTCAAGTCAAGGCAAAGTTATTTATATATGGCATAACTACTATAgag
catttttagattttgagaaaaaatcttattaaaatattatttttgtttat
ttatagtAATATCAAAAATGTATATTCATTTAGTTAGGTAgcttaaaaaa
ttatcaaaaacaaaaaacaaaatttctcaaagactttcttttaaaatatt
acagTATAGGTTTTTGCTTCTAGTTCGGATAGCATGTAAACCAATCCGGC
GTTACGTCATGTCTCTCATTGTATATCAAggtattaaaatatattttaca
cagaTATCGGACTTTTATATTTTACAGCTCCTCGATATTTTGTTTCGTAT
CATTATCCGGTGTTTTTCTCAATCTATCGATAAGCATTGaaccataaaaa
taaaacaccaTTACACAGGACCAGCCCAAACAGATAAAAGCCATACCTCG
AAACAACACTTTCCCGCCATAACGATCATACGTAGCTCCACCCGCCATAT
TTGCAATGAGAATTCCGAAACCAAATTTGAGCCCGTTGACAATACTAACC
ATTGTAGTGTGGATTTCTTTAGgtgatattttttccacccGTTCAATGGC
GGCCGCAAAGAAGAGAGCGAACCCGAAGCTGTGTAATAGCTGTATAGGTA
GCATGACCCATTGGTTGGTGACGACCGACATTAACAAGAATCGTAAGAAA
TAGGAAAAGATGCCAGATATGAGACACGGGATGTCACCGATCGTTTTAAT
GATTTTGTGGGATGCAGGAAACATAAGGACTTCACCGATATTACCAACAA
CTATGCTTAAACCCATTGCTGTTTTGGATGAAGAGAGTTCATTTTCCATA
TACAAGAAAATGAAGCCAAGAACTGATCCTAAACAGATTCCAGATAACAG
GACCGTGATCAAAAAAATGATGTTGGAGACACTTCCACAGGTTTTGAGTA
CCGGTTTTAAGAGAGATTTGGTGCTGGAGACAGGGCCACCAGTTGACGGT
TTGATTTCAGCTTCGTATGCCACGTAAAATGAAATGGGAATGAAGATtaa
gaaaatcgggaaaaaaacataaaacgcAGCCGTGTAGTCCGATAAATATT
CATCCTCGTAACGATCTACAAAGATTCCGGCAACGAAGCTGGTTGCAGCG
AAACCAATAGCTCCAAACAAACGTTGGCGACCGAAATTCGTCTTCTTGGT
ACTTTTTTCAACCAAGTTCATGACGAATGAGTCAAGGAATGAACCAATGG
CAAGCTCTACAAATCCTGAAGCAAGCATGACAGACATCATGACATAAAAC
ATGGTTGAGTCTCCACATTCGGCCGTGCAGTATTTAATATCGATATAAGT
TATTGTTCCATTGTTATAAGAGGTGTGATTTTTACCGAGTTCAAAGTCGT
TGACGTGTTTCGCGATCCACGGCATCGGGAAAACCATTGAAAGATGCATC
ACAGAAAGAAGTAGCAGTAATGCCTTACGTTGGCCTGTATAGTCTGCCAA
CATGCCCCATAAAGGAGCTCCAATAAAAGCTGGGATTGCACGTAACCCAG
TGATAAGGCCAGCCTGCGTAGCCGTCAGACCCAATGAggtaaagaaaaca
ttgaaatatgTGATGTAGCATGCTTGCGCTCCGTAGAAAAATAAGTAGGA
GAGTTTGGAAGGTACCATACGAAGATCCGGTGTGAAGAATTGTAACATTC
GATTCGCTGGTTGACTGGAATTTTCTTCAGGGTCATTATTACAGATTTGA
TCAGTTGAACGAGAGGTAGAGATCGTATCTTCTGAAGCCATTTTGCTGCT
AAGACAACGTTACTTCAAGTGCTAATaacttgttttgaaaatatataggA
AAGGGATAGTCTGTGTATTTCAAATTAGAATGTCCtggtttctttaaaaa
agaagcgcaTCGGTCGTAAATACCTCTTTTAAGGAAATAAGAGGGTACCG
TGTAAGTTACATAGGATTGAGATTAAAGTTGTTAGTTAACAGTAATAAGG
TCGAAAAACGtggaattgaaaaattaaagtgGCCTAGAAGGACAACAGTA
TTTAAAAATCACGATATCTTTAACTTGAGAATGTGGCATAGTATCAGCCA
AAGACCAATA Run BLAST on NCBI transcript from alignment at sc0000048:724879..729290+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004767 ID=TCONS_00004767|Name=TCONS_00004767|organism=Clytia hemisphaerica|type=transcript|length=4412bp|location=Sequence derived from alignment at sc0000048:724879..729290+ (Clytia hemisphaerica)
CCAATAGAAACACTATCTCAATTCGAATAACCGAATTATTCGAATAAGTA
CAAGTTCGTATAGCCAGGAGTCTACTGTATACGGTATACTAACAATTCCC
TAACAATTTTAGTCCAGAAGTATCAAAATTCCTGATCAGAAAGCCGTTTA
CAACAAAGCTTCAGATGGCATCAGTTATATtctcactttcactttcatca
tTTTCAGACATAATGGCACACACGAATGAAAGACATATCCACCTGATACT
ATACGATTTCGGAAGTACAGATGCCAACttgaaagagattttacaaCAAG
CAACATTCGAGCATTCTTACATGAGAAACGAACAAAAATTCAGCAAAGTG
ATTGGTTTAAACAGAGCAGTCAGTTCTATCCAAGAGGAAGaccccatcat
ttttattttggaTTTACAACTTCAACTACCGATATTCCTGTTTGATTATA
TTAGAAAGGTGAGTACTCTCAGGCAGGAATGTCGCGGTTTGACCGAGCCT
GGGGAGACAGATCGAAAAAATCAGTATTTTAGTAACACTGttatttttta
ggcttaaatagAAAACAGGTGAACAACTAGTGATATTAGAGCATTTTGTT
CCCCATAAAAATCGACAGTACTTACCCCTTCAACCACTCTCAGGTACTTT
CTTATACCCTTTCAACAGTGTTCCGCTGGGAAGAACCTCTTAATACCTCA
AtatatttttaagaacatctgTAAGATACATgaacgatttttttttaatt
gaaaatttgtTGATAAAGTTGGTCattattcgaaaaaaattcaattttac
gTTAAAGTTTTGGCGATTTACTTTTTAGTAGATAATTTCTAGGTTTTCAA
AACGTGGTGCCATGTTTGTGAAATGGGGTGCTTTTGATTTATATGATATT
ATATACATTTCTTTTTAGCATACATTCCGTGAAAAGACAGTTTACGTTCC
AATTCTATTACGATTGGGTTGCGGCGAACATACGGCATTCACAAAGCTAA
CTGACCAATCAATTTGGCAAGAAATTGGTTATGGGATGATCGCTCTATtc
aaatctgattggttaaaaattgGAGGtgcgaaaatttttattttagcatG
TCACTCCTTTTattgtaagaacaattttataagaataacaaggctcaaaa
tcgctaaaaatgAGAATAACTTAAGAACAATACTGAggctgaaattactc
aatttcaagccaTTTGGGGgtcataaatgaaaaatttgggtTTAAGCCTT
TCAAAAAAGAGTTTAACTATAAAGTCGACCTTCAGGGGTACCAGGGGATC
GGTATTTTGATGTTTAgctttttagggggggggggggggttgggtttttt
tttttgggggttttgggggggggggggtgtctTTGAAGTAATGTATTAGT
CTGTTAGAGTGTTAGCTCAAAAAAGGCCACAACCTTGAAATAAATCATCT
TTAATTACTTCTTTTAGGTATGAATGAGACTCGATTCTCACAGAAATGGG
GCGGGGAGGATTGGGAATTTGTGGATCGTGTATTGATTAATAAAATGGAA
GTCATTCACCATCGGTTACCTGGTTATTATCATATCTACCATTCCAATAA
AAATACATGGGATGGaaccaaaaactgaaaaaaagaacCGAGAAGTAGCA
CTGTTGACTGTCGCTAATTCGAATTCGAACAGGAttaatagatagataga
tagatagatagatagatagagtcgatatctAACGTGGATAGCcaagtaat
ctaggacttttaggcagtctttcgattgttttcacggggtccacggccag
ccagcttggctatctatgaactgaacggaacattggaaggagcggagAAC
CGCGAATCCCTGGTTTGAAACTGAAGTTTATATCTGCAAATGCGAGATCT
AAGTAAAACACTATAAATACCAACAACTTTTAGATCCCAGCGCTGGTCAA
GCTAAAAAATTATTGCCGACCAGAATAAATAGTCCAGATTCACTAATTTT
TCTGATTTCCCCTTTAAATATCAGGTTTCAGTATTTCATGTTAATTTGTA
AGCGTTTGCAAGGTACTTTTGGGCTGACAAATCTGATAAAAAGCAGACTC
GTTTATTTGAAAGATCAGCCCAGATAATTCGAATCCCGGACCATTCTCCG
ACCGACGATTCCCCGACAGACAACTCCCCGAACGGGTAATTCCCCGAGCG
GACAACTCCCCAACAGGACAATTTTGGCTCGGGAAGATGTCTGTCGGGGG
ATTGCGCGGTTGGGGAATGGTCAGTCGGGGAACTGTCCGGATACTGATAA
TTCAAGTCAAGTCAAGGCAAAGTTATTTATATATGGCATAACTACTATAg
agcatttttagattttgagaaaaaatcttattaaaatattatttttgttt
atttatagtAATATCAAAAATGTATATTCATTTAGTTAGGTAgcttaaaa
aattatcaaaaacaaaaaacaaaatttctcaaagactttcttttaaaata
ttacagTATAGGTTTTTGCTTCTAGTTCGGATAGCATGTAAACCAATCCG
GCGTTACGTCATGTCTCTCATTGTATATCAAggtattaaaatatatttta
cacagaTATCGGACTTTTATATTTTACAGCTCCTCGATATTTTGTTTCGT
ATCATTATCCGGTGTTTTTCTCAATCTATCGATAAGCATTGaaccataaa
aataaaacaccaTTACACAGGACCAGCCCAAACAGATAAAAGCCATACCT
CGAAACAACACTTTCCCGCCATAACGATCATACGTAGCTCCACCCGCCAT
ATTTGCAATGAGAATTCCGAAACCAAATTTGAGCCCGTTGACAATACTAA
CCATTGTAGTGTGGATTTCTTTAGgtgatattttttccacccGTTCAATG
GCGGCCGCAAAGAAGAGAGCGAACCCGAAGCTGTGTAATAGCTGTATAGG
TAGCATGACCCATTGGTTGGTGACGACCGACATTAACAAGAATCGTAAGA
AATAGGAAAAGATGCCAGATATGAGACACGGGATGTCACCGATCGTTTTA
ATGATTTTGTGGGATGCAGGAAACATAAGGACTTCACCGATATTACCAAC
AACTATGCTTAAACCCATTGCTGTTTTGGATGAAGAGAGTTCATTTTCCA
TATACAAGAAAATGAAGCCAAGAACTGATCCTAAACAGATTCCAGATAAC
AGGACCGTGATCAAAAAAATGATGTTGGAGACACTTCCACAGGTTTTGAG
TACCGGTTTTAAGAGAGATTTGGTGCTGGAGACAGGGCCACCAGTTGACG
GTTTGATTTCAGCTTCGTATGCCACGTAAAATGAAATGGGAATGAAGATt
aagaaaatcgggaaaaaaacataaaacgcAGCCGTGTAGTCCGATAAATA
TTCATCCTCGTAACGATCTACAAAGATTCCGGCAACGAAGCTGGTTGCAG
CGAAACCAATAGCTCCAAACAAACGTTGGCGACCGAAATTCGTCTTCTTG
GTACTTTTTTCAACCAAGTTCATGACGAATGAGTCAAGGAATGAACCAAT
GGCAAGCTCTACAAATCCTGAAGCAAGCATGACAGACATCATGACATAAA
ACATGGTTGAGTCTCCACATTCGGCCGTGCAGTATTTAATATCGATATAA
GTTATTGTTCCATTGTTATAAGAGGTGTGATTTTTACCGAGTTCAAAGTC
GTTGACGTGTTTCGCGATCCACGGCATCGGGAAAACCATTGAAAGATGCA
TCACAGAAAGAAGTAGCAGTAATGCCTTACGTTGGCCTGTATAGTCTGCC
AACATGCCCCATAAAGGAGCTCCAATAAAAGCTGGGATTGCACGTAACCC
AGTGATAAGGCCAGCCTGCGTAGCCGTCAGACCCAATGAggtaaagaaaa
cattgaaatatgTGATGTAGCATGCTTGCGCTCCGTAGAAAAATAAGTAG
GAGAGTTTGGAAGGTACCATACGAAGATCCGGTGTGAAGAATTGTAACAT
TCGATTCGCTGGTTGACTGGAATTTTCTTCAGGGTCATTATTACAGATTT
GATCAGTTGAACGAGAGGTAGAGATCGTATCTTCTGAAGCCATTTTGCTG
CTAAGACAACGTTACTTCAAGTGCTAATaacttgttttgaaaatatatag
gAAAGGGATAGTCTGTGTATTTCAAATTAGAATGTCCtggtttctttaaa
aaagaagcgcaTCGGTCGTAAATACCTCTTTTAAGGAAATAAGAGGGTAC
CGTGTAAGTTACATAGGATTGAGATTAAAGTTGTTAGTTAACAGTAATAA
GGTCGAAAAACGtggaattgaaaaattaaagtgGCCTAGAAGGACAACAG
TATTTAAAAATCACGATATCTTTAACTTGAGAATGTGGCATAGTATCAGC
CAAAGACCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004767-exon-sc0000048-1491911889:724879..725336 | TCONS_00004767-exon-sc0000048-1491911889:724879..725336 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1510915933:724879..725336 | TCONS_00004767-exon-sc0000048-1510915933:724879..725336 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1575043694:724879..725336 | TCONS_00004767-exon-sc0000048-1575043694:724879..725336 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1491911889:725797..725953 | TCONS_00004767-exon-sc0000048-1491911889:725797..725953 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1510915933:725797..725953 | TCONS_00004767-exon-sc0000048-1510915933:725797..725953 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1575043694:725797..725953 | TCONS_00004767-exon-sc0000048-1575043694:725797..725953 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1491911889:726346..729290 | TCONS_00004767-exon-sc0000048-1491911889:726346..729290 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1510915933:726346..729290 | TCONS_00004767-exon-sc0000048-1510915933:726346..729290 | Clytia hemisphaerica | exon |
| TCONS_00004767-exon-sc0000048-1575043694:726346..729290 | TCONS_00004767-exon-sc0000048-1575043694:726346..729290 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:724879..729290 + |
Blast
BLAST of TCONS_00004767 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.299e-32 Identity = 62/182 (34.07%), Postives = 99/182 (54.40%), Query Frame = 3
Query: 216 AHTNERHIHLILYDFGSTDANLKEILQQATFE-HSYMRNEQKFSKVIGLNRAVSSIQEEDPIIFILDLQLQLPIFLFDYIRKHTFREKTVYVPILLRLGCGEHTAFTKLTDQSIWQEIGYGMIALFKSDWLKIGGMNETRFSQKWGGEDWEFVDRVLINKMEVIHHRLPGYYHIYHSNKNTW 758
A T + ++L DF S D +++ L+ A + Y+R F + GL V ++++ I+F+ DL + P + D IRKH + + P+++RL CG + W+ G+G+ ++KSD+ ++GGMN F +WGGEDWE +DRVL +EV RL +YH YHS + W
Sbjct: 849 ARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGS----SPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026
The following BLAST results are available for this feature:
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