TCONS_00004854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004854
Unique NameTCONS_00004854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004854 ID=TCONS_00004854|Name=TCONS_00004854|organism=Clytia hemisphaerica|type=transcript|length=955bp
GAACTTCGTGTTTTCGAAACAATCCTTGTGGATCGGATAAGCGCTGTGTC
GATAATTGTAATGATTTAAGCGTTTGTGTTCCTCTTGCTGTTGaatcTCT
CCACAATCACATCCAAAATCCAACCAGTTCATCTGTTTACAACAGTGACA
CACCAGCTCCTAATGCATTCGATGGCAACGAAGCAACATTGTTCCACTCT
GGAGTCACAGGTTCTGCTCAGATGACAACACATTGGCTTAGGGCAGAATT
TCAAACGcgtgtttttattgattatgTCGTTTTTGTCAATCGATTGCATT
TTTACGAACGGGAACACAATATTGACCTCAAAACCGTTCTTTCCATTAAC
GGCCAAGAAGTTATGACATGGTTTGGAAATACTGGTAAAATTAAATTGCG
TAGAGCCTTTTTATGTATGCGCCAAGCTGATGGAATTTACATTGAACAAC
CACAAGCTGTATCGGCAAAAACCATTCATATAGAAGAAATTTGGGTATAC
GGTGCAGTATTGTAATGCTTACCTGTTTaaaagtacacgcttttttataa
gaatattcatgatgaaattggccaaaaaattaaaaatatggtAAAGAACA
CTGGAATTttgcaactgaacctaagaatgccatttttagagtattCTACC
ATTAAATTACCAAATATTCCCCAGCAACGCTAAAGGTTCCATTTTTGCTT
GAGCTGTGTATTACATACTAGATTTTAACTGAGTTTGGATCCAAACCtta
gaataccctaagaatatttcaggatgatttttcaCAAAtgataagaatat
tcatgatggaTTGGAAAAAcacgattcttataaaaagaaaattatttata
gAGACCTCCACGATTTAATAAATGAACACCCAGCACATTTAATAGCTTTT
TATCATGTAAATTTTTCATAGGTATGGCATTTTTAACttaatttatttat
tgttg
Run BLAST on NCBI

transcript from alignment at sc0000049:244888..252104+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004854 ID=TCONS_00004854|Name=TCONS_00004854|organism=Clytia hemisphaerica|type=transcript|length=7217bp|location=Sequence derived from alignment at sc0000049:244888..252104+ (Clytia hemisphaerica)
GAACTTCGTGTTTTCGAAACAATCCTTGTGGATCGGATAAGCGCTGTGTC
GATAATTGTAATGATTTAAGCGTTTGTGTTCCTCTTGCTGTTGGTGAGTC
ATACATTCCTAATTCATACTTCAGAGGCTAAACGGACAAAGGGCTGTTAA
AATTAATCTTACATTGAGAAGGCagcaaatctttttttatttctttattc
taTCGGTTATGTATAGACCTTAACTGAGGAGGTTCAATCTCCAGGTAGCA
TTGAAAGGAAAAAGAAGTATTGACCAGGAAAGGTGTAAACACCTTTGTGT
ACATTCTCCCAAACACTCGTGAACCTACTTTcagttatataattttttta
tcgatatcaaaatttacttttttctcAGATGCCTTAGGGCTAAAGGCTTG
ATTGTTTCAAGAAAAATCTATTCCTAATTTTAGCAATGAACAATCATGTA
GTGCCATAGTCTCGTTTATAATTCAATACCCATACAGTGTACTTTAGGct
tacaaactttcgcgagcagaaactttcacgagtcagaaaaatcgcgaaat
tcacgacatttactttcgcgaattttattaaaaaatgtttttcgcgagca
taaactttcaatTCAGCATTGCGGACGAAGTAAAactcagaataaaaaca
tactggtttaaaatatttcgctCTCTCTTAGAGCATCTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGTCATC
AGAAACATCCCGAAGGGACAATTCATCAGAATCCGTCGAATTTGTACGAA
CGTAGCTGACTACATCAACCATGGCAAACAACTCCTTCAGTACTTTCTGA
AAAGAGGGTACAGACACGATGTTGTTGAAAACACGTACAAAGACGTCCTG
AAGATCAGCCGGGAATCTCTCTTtcgttcaaaagaaaaagataaacaaga
tCAACAATCCATCTTCGTCTGCACATGGCATCCAGCTCTCAGACACCTAT
CATCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTTAAACGtctttgttattcaaaaaaactgaagatgctctaagagag
agcgaaatattttaaaccagtatgtttttattctgagcataaactttcgc
gaatcgttggataaaaatgaggattttcgaataaaaatttccttaaaagt
gaaaaataatccTTAAATATGACTAGGACGGTTGCTCTTTGACTTCAAGA
AGACATTAGAGGATAAGAATATGCTGAAAATTGGATATTTATTACAATTT
CGaggttttttagattttcaatatttttaagaatttttgcgcgagcataa
actttcgcgaatcgccctgttaagaattttcaatgacatttactttcgcg
aaaaaggccaaaagtcgcgaaaatcgcgagcgaaagtttgtacgcctaaa
gtatattCCACAATTTGAACTTTACTGTAAACCTTGACTCTGGGGAATCT
AGGATTCTTCAAACCTAATCCCATTGGGTTTTGGACACTCTTAAGGGATA
AAGAGTGAATAGTATAGTCATCATTGCAGTAATGTATCTTTCTTTTAGAA
TCCTTGCATGCACACGTTAAAGAAGCAACAAATTCTTCTACTATGCAGGA
AATATCGACGGTGACAGCTATAAAAGCATTTGATGGAAGAGAACTCTATG
TTTCACAGTAAGCATGGTTTTCAGTATGGTGAAACAACACATTGGATAAA
GGTTAGTAGTCCTAGCCTGTTTACCTTCTTTTTAGCTCTATACTAACTGC
TTCTGACGCATTCGAGTTATTTCTATTTTGagcgaatttttttattttga
cttctGCAATTATTTACTTTATGCTCTGATACAAAGGCCTTGTACGCTGA
AAAGAAATGTCTTAAATATTGAAACGCAAGATGACTTGTTCTCGTCCTAG
CTGAGATTATTCCAAATAGTGAAAAAACCATTCTCTGTGTGTCTTTCTAA
GACATGTCTTGTACAGGTAATCTTTCCTGTAGTCTCTCTTTATACATTTC
ATTATTATTTTACACACCACAAAAGGCCGAATTTCACAGTCGAGTTTTCA
TTGACTACGTTGTGTTTGTTAATCGTATGGATATTCCCTGGCATACTCGA
AATTCTCACATTGACCTCAAGACTATTCTTTCCATCAACGGTGAGACCAT
CATGAGTTTGTTTGGGAACACTGGTGAATTTGAAATCGAACGTCGAATGT
TTATATGTATGCTTCAAGCAGATGGGATCTATGCTGTACAGCCACAAGCC
GTTTCAAGAGATGCCATTAATATCATGGAGATTTGGGTCTATGGTGCTAT
TTTGTAAATTCGTTGACACATGTGATGGAATTATCTGAAAACATCTCGGG
AAGATTACAGATCTTGGGCCCTTCCGAAGTTCTATTATTCCGCTCCAAAT
TCTGTTATTTAAAATCATTACATTTGAAATTGGGTAAATTGAAAATAGCA
AATTAACTTCAATGTTCCTATTCACTGAAAATATTTCCATTTAAAGAATT
ATGACTTTCAGATTccttcaaagaattctgttatGACAATTTTAAATGGA
catctaaTTAAGAAACTTTTgcttcatgttttttttattagtttaCCAAT
AGTTTGTTGCTGTGCATTATGTGTTGACTTGGATTTCAGTAACAGAGTAT
AGATTTGGTCACGTGTGGTGTTTATACAATAAAAATACACTAAATAATTT
atgattaaatatttttttcaacaatttttgatttttgaataattCAACTA
ATTTACAATCAAGCTTATGAATGTTGGCAGTTANTTTTGAATAATTCAAC
TAATTTGACTAATTTACAATCAAGCTTATGAATGTTGGCACTTTTTAGAA
ATTCAGAACATTCCGAAAGCAATTCCCCTCCCCTTGTCTACAAAACTGAA
GCATTGTCAATCTTTCACCAGAACTGACTCCAATAGCTTTGTAGACAGGG
GAAGGTTTCTCCAGTGCCATTTAagaaaagtgccaaaatattatgaacaa
tattgtatgtatttttttcccattaaatttattgatttttttcaatacaa
aattattattttttagttcCCTTGTGGAGAAATAGCTTAATGATATTTGA
ACAATGAATTTAAAGTTTCAAAGATTTGTAACATTGACAATAATTCTTGT
TTTTGTGAACGAAACCTTCTCTCATGTTTTCCAACTCGACCAATGTCGTA
ATTTTGATGCAGAGTTTTCAAAGATCACTTATGGTCAACGATTGATTGGT
GATATTTTCCAAACTTTGAGTTTACTTTCTTTGAGAGAGTGTCTGACAAA
GTGTTTGTATTATTTGGGATGTCTGTCAGTCAATTACAATAGGGATGATT
CAACTTGTGAGATTTTGGGAAACACTATCCAGAGAAATATTTCAGATCAA
ACAGATATTTTATCAGGCGATGAAGAATGGAACCATTTCGAAACGAATTA
TGACAGAAAAGAGGTAAGAACAGGGGTGTTCTTCTCAGTGACTGTTGAAG
TTTTGAAATCCACCGGGGTGTGActatgaaaaaatctttttctcggtggt
ttttttttgaaatctcaaAAACTCACTATGATGGAAATTTTTAACTCGAA
TTTCACCTGGctggaaaaaatttattttatggtGAGTCAGGCTTTCCTAG
AATTCAATAATATGTATATTTTTTCCTTTGAATGAGTTGCCTTAATCATA
ATTTTTGACCGTGGTAAAATAATAGATTTCAAAGTTTAACCAGGGTGGAA
TTTTAATAAACTTTTGACAGGGTTCACTCATTATCCCACCTCTCATAATT
AGGCCATTTCAGGTGATTTTTTACAAAGAATTATTCACCGGGGCGGACCT
CACCAGGTCATATAGGGGGTGTAAAAATGTTATACATCTTTCTGTTGCAA
GTTGTAGATCTGACCGGGATAATCTTGTTAACCCGAATATTCCCATAACT
CAAAAATTATTTGGatggagttttatattttttggtcTCTTTTTATTCTA
GATTGGGACTTCGTGTTTTCGAAACAATCCTTGTGGATCGGACAAGCGAT
GTGTCGATAATTGTAATGGTTTAAGCGTTTGTGTTCCTCTTACAGTTGGT
AAGTCATACAATCCTATCATTCATACTTCGGAGGCTGAAAGGACAAAAAA
GCTGCTGAAATTCAAAGAAGGTTTTACATTGTAAAGGCagcaaatttttt
gatttctttatcgGTCATGGATAGGCCGGtgtccttaactcaaacaaaaa
TCTCTAGGTAGCGTTGAAAGGAGAAAGAAGTATTGACTAGGAAAGATATA
AACACCTTTTAACTGCAAAAGACATTTAGACATTACACAGGGAAAATCCT
CATACTCTCTGATGTATAAGTACAAGTTGCACAAGAATGGCGGAAGATTT
TTGTTTACAAGAACGATTTTGCATAGTGAATACACGTGATTATATACAtc
gaactttttattttcagaatcTCTCCACAATCACATCCAAAATCCAACCA
GTTCATCTGTTTACAACAGTGACACACCAGCTCCTAATGCATTCGATGGC
AACGAAGCAACATTGTTCCACTCTGGAGTCACAGGTTCTGCTCAGATGAC
AACACATTGGCTTAGGGTCTGTTTCCTTTTTGGTGTTTGTTACTTATGCT
GAATTTCCACTTGGAAATATGGGTGTTAGAAAGCGAGCTTATTAACGATT
CTTTAAAACCATAAGGTATTATTTAGTATCAAGGCATCATTAAGATGCTC
CAAATCAGTTAGACATTAGAGTATCTTTTAACCAATGTGGGTATAGAAAG
ACTCTAACTACTACCAGCCTAAGCGCTATCATTTTTTATAGGATTCGTAT
TTTCAGTAAatttttctacgtcactgcagtaaacTGTAAACCACTTCTGT
CAATTGAGATTAAGTTTTACGAAGGCAACGATGATGGAaaacagttcttg
aattcccaagtCAATGAAACgatgacaaaaaaacaatttttttcatcgtC
TTTCGCGAAATCTGCACATACATTTTTGCGTTTtgaattgaatagaaaat
agtatgTGATGGATGCACGAGTCCTATAAAATGGGCCAATTATCCTTAAA
CATAAGAGGATTTCATTATtaatttaaaacacttaaaattttttatcttc
acaGGCAGAATTTCAAACGcgtgtttttattgattatgTCGTTTTTGTCA
ATCGATTGCATTTTTACGAACGGGAACACAATATTGACCTCAAAACCGTT
CTTTCCATTAACGGCCAAGAAGTTATGACATGGTTTGGAAATACTGGTAA
AATTAAATTGCGTAGAGCCTTTTTATGTATGCGCCAAGCTGATGGAATTT
ACATTGAACAACCACAAGCTGTATCGGCAAAAACCATTCATATAGAAGAA
ATTTGGGTATACGGTGCAGTATTGTAATGCTTACCTGTTTaaaagtacac
gcttttttataagaatattcatgatgaaattggccaaaaaattaaaaata
tggtAAAGAACACTGGAATTttgcaactgaacctaagaatgccattttta
gagtattCTACCATTAAATTACCAAATATTCCCCAGCAACGCTAAAGGTT
CCATTTTTGCTTGAGCTGTGTATTACATACTAGATTTTAACTGAGTTTGG
ATCCAAACCttagaataccctaagaatatttcaggatgatttttcaCAAA
tgataagaatattcatgatggaTTGGAAAAAcacgattcttataaaaaga
aaattatttatagAGACCTCCACGATTTAATAAATGAACACCCAGCACAT
TTAATAGCTTTTTATCATGTAAATTTTTCATAGGTATGGCATTTTTAACt
taatttatttattgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002750XLOC_002750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004854-exon-sc0000049-1491911889:244888..244980TCONS_00004854-exon-sc0000049-1491911889:244888..244980Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1510915933:244888..244980TCONS_00004854-exon-sc0000049-1510915933:244888..244980Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1575043694:244888..244980TCONS_00004854-exon-sc0000049-1575043694:244888..244980Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1491911889:250705..250853TCONS_00004854-exon-sc0000049-1491911889:250705..250853Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1510915933:250705..250853TCONS_00004854-exon-sc0000049-1510915933:250705..250853Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1575043694:250705..250853TCONS_00004854-exon-sc0000049-1575043694:250705..250853Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1491911889:251392..252104TCONS_00004854-exon-sc0000049-1491911889:251392..252104Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1510915933:251392..252104TCONS_00004854-exon-sc0000049-1510915933:251392..252104Clytia hemisphaericaexon
TCONS_00004854-exon-sc0000049-1575043694:251392..252104TCONS_00004854-exon-sc0000049-1575043694:251392..252104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:244888..252104 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.294005	0.0835732	0.0887077	0.0668257	0	0.120227	0	0.385455	0.0971521	1.93615	1.92861	0.108928	0.172465	0.00480947	0.180414	4.58029	3.66422	0.015354	0.463677	0.459733	0.356392	0	0.110375	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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