TCONS_00004860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004860
Unique NameTCONS_00004860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004860 ID=TCONS_00004860|Name=TCONS_00004860|organism=Clytia hemisphaerica|type=transcript|length=564bp
tcagtataGAAGATAAATAAAAGATaactaaaaaaacaaagaaacttaAC
ATCTGGAAGAGACGGCCTAACTGGAACTTGAAACTCTCATCATTTTCTCT
ACTGGACATGGATCGATCAGTTTTATTGAAGATAGGAGCCGCTGTCATAA
CAATTCACTTTGGTTTGTATTTTGGTATGCAAGGTTTTCAATCTGAACGT
GccaagaaaatcaaagaattaACAGAGGAAGAAGTCGAACAAAAATGAGT
CAATTGGACATTGAATGAAGCAAGGTGGTGCATCAGTCCGTTTTCATATG
AGAATGTTTGAAATGAAAGACTGTTAATATTGGATGTTATCTTTGTGGGT
GCTGGTGATGGTTATACCACTTCAACTATAACAATTTGATGGCaattcgt
gaaattaaattttgtagGTAGATCAAGATTAATTCAAGAATACGTTAGAA
AAGAATGTATCATAAAAAtagttatttaattttttttctttacccCTTGG
TTGTTTCAATCAACCCCTGTCACGTTAGACATCCGTTAGCTttcaacacc
cctgtctcacatag
Run BLAST on NCBI

transcript from alignment at sc0000049:274540..276757+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004860 ID=TCONS_00004860|Name=TCONS_00004860|organism=Clytia hemisphaerica|type=transcript|length=2218bp|location=Sequence derived from alignment at sc0000049:274540..276757+ (Clytia hemisphaerica)
tcagtataGAAGATAAATAAAAGATaactaaaaaaacaaagaaacttaAC
ATCTGGAAGAGACGGCCTAACTGGAACTTGAAACTCTCATCATTTTCTCT
ACTGGACATGGATCGATCAGTTTTATTGAAGATAGGAGCCGCTGTCATAA
CAAGTAAGAAATTTCTAACCTGTTCTACGATTTAAAAAACTCAAACTGTT
CACTGTACATAAGTTCTTCTTTACCAATACCGGTGGTTTCATGCATCATT
GATGCAATCATCAGTTGGATCATTAGAAAAATTAATATACGTTATGATAG
CCCTTAAAGACCAAAGTTCAATGCAACGCTCACTTACTTTCCAGTTTGGC
ATTAATCCACTTTTAGCTCAAGTTTGCGTTAAATCGTTCAGTTAGCATGA
CCACTTGTAGCTTTGTTAACTTTACGCTGAAAATCTGATTTCGAAATTCA
GCTTGGATCGATTAAAGTAAATCCATGCATGCATTTTCAACTTTGCCGGT
GTCACAGTAAAATATTACTCCCCAAAATTTATACTCTCCAGTCATTATTT
ACTGGGAAATTATTACTCCCCAGTAATCTTTTCCCAGGAAATTATTACTT
CCGGGAGTATAAATTTACGCATAAATAATGACTCCCTTCGGGAAATTTTT
ACTCCCCTGATAGTATACCAAAAAACTGGCATAGATCACGATCAACATTC
GGTTTCCTAATCCTTTCTTTCCTGTTTATCATgaataaataacaaaaaca
atatgGAACCTTTTACTgttattttgacatttaaattgaatttaaacttt
tttcttgagtgCAATTTGCTTGGGTTAAAAAATCTGGCTACATCTTGACA
CTACAAcactgttttctttattttgaaataattcttgaaatttaattcaa
aaaattcttgTTCGTAGAGCTTTTTCTTGGCCCAATAAAAATTCTAATGA
AAAGGCATCTTTCTTGACTATACTGATTTCGAACCCCCACCCCCGTCTAT
TATATTCTACAGAAATTTCGGACCCCCTCCCCTTTTTATATTTGGACCCC
TGTATTATTTGGGTCCTTAGagtagaatatttcaaaaggaaaatgATGAT
AAAAAATCGCTNctagcccctgtatctataaggctggaacaccggattct
tccagtcgtttatacaaactaaatcccgtattatttttattattagtagt
attagacgaattataaacgactccagtctaggggTACAGTTCAACGGATG
GGTGGGGGTAACAACGGGTCACTTTAACTTGTAGATGATTTTATGGCTAG
GTTTTCTTTTACAGCAACCACAACAATAAAGTTTATGGATTACAGTACGC
ATACATTTTTAAAACGTCTCTACTTAGCAAGTGACTTCATTGATTGGAAT
GtccaaatcgaatgtttaattCAAATATGCAATAGCCGGAATTCACCAGG
GAGTCATAATTTACTGGAAAAATAACACTCCCCCCTATTAGAGCAAATAA
ATTTGCAATTTGAAGGGGAGTAATTTTTTCCACGGGAGAGTAATAATTTC
TCAGGTAATTATTACTCCGGGGGTAattttttcccgggaaattATAACTG
AGGGAGTGATTTTTTCCGGGGAGTAAAGATTTACGGTTACACCGGTATGG
TTCGACNTTGTAGCTTTGTTAACTTTACGCTGAAAATCTAATTTCGAAAT
TCAGCTTGGATCGATTAAAGTAAATCCATGCATGCATTTTCAACTTTGCC
GGTATGGTTCGACTCGTAAAATTCCATCGGtaataaatttaatttctatC
TTTTCAGTTCACTTTGGTTTGTATTTTGGTATGCAAGGTTTTCAATCTGA
ACGTGccaagaaaatcaaagaattaACAGAGGAAGAAGTCGAACAAAAAT
GAGTCAATTGGACATTGAATGAAGCAAGGTGGTGCATCAGTCCGTTTTCA
TATGAGAATGTTTGAAATGAAAGACTGTTAATATTGGATGTTATCTTTGT
GGGTGCTGGTGATGGTTATACCACTTCAACTATAACAATTTGATGGCaat
tcgtgaaattaaattttgtagGTAGATCAAGATTAATTCAAGAATACGTT
AGAAAAGAATGTATCATAAAAAtagttatttaattttttttctttacccC
TTGGTTGTTTCAATCAACCCCTGTCACGTTAGACATCCGTTAGCTttcaa
cacccctgtctcacatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002753XLOC_002753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004860-exon-sc0000049-1491911889:274540..274692TCONS_00004860-exon-sc0000049-1491911889:274540..274692Clytia hemisphaericaexon
TCONS_00004860-exon-sc0000049-1510915933:274540..274692TCONS_00004860-exon-sc0000049-1510915933:274540..274692Clytia hemisphaericaexon
TCONS_00004860-exon-sc0000049-1575043694:274540..274692TCONS_00004860-exon-sc0000049-1575043694:274540..274692Clytia hemisphaericaexon
TCONS_00004860-exon-sc0000049-1491911889:276347..276757TCONS_00004860-exon-sc0000049-1491911889:276347..276757Clytia hemisphaericaexon
TCONS_00004860-exon-sc0000049-1510915933:276347..276757TCONS_00004860-exon-sc0000049-1510915933:276347..276757Clytia hemisphaericaexon
TCONS_00004860-exon-sc0000049-1575043694:276347..276757TCONS_00004860-exon-sc0000049-1575043694:276347..276757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:274540..276757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.39473	8.86837	5.4314	4.87096	14.8248	9.79781	16.5746	19.8472	20.2959	18.255	11.9475	7.72069	5.45014	5.591	6.58273	8.03867	12.3037	12.1495	4.46189	6.33657	7.44013	7.21094	8.47937	8.43821	7.51088	8.42698	5.34432	4.67988	8.98473	6.21569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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