|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004861 ID=TCONS_00004861|Name=TCONS_00004861|organism=Clytia hemisphaerica|type=transcript|length=3056bpRun BLAST on NCBI protein sequence of TCONS_00004861-protein >TCONS_00004861-protein ID=TCONS_00004861-protein|Name=TCONS_00004861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=777bp MGPKKGKGGKGKLSKAEKERIKKEEAEQRAREEEEARIQAELEEREREERRun BLAST on NCBI transcript from alignment at sc0000049:298318..345330+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004861 ID=TCONS_00004861|Name=TCONS_00004861|organism=Clytia hemisphaerica|type=transcript|length=47013bp|location=Sequence derived from alignment at sc0000049:298318..345330+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:298318..345330+ >TCONS_00004861 ID=TCONS_00004861|Name=TCONS_00004861|organism=Clytia hemisphaerica|type=CDS|length=44346bp|location=Sequence derived from alignment at sc0000049:298318..345330+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004861 vs. Swiss-Prot (Human)
Match: CASC1 (Protein CASC1 OS=Homo sapiens GN=CASC1 PE=2 SV=2) HSP 1 Score: 196.823 bits (499), Expect = 2.030e-52 Identity = 109/358 (30.45%), Postives = 186/358 (51.96%), Query Frame = 1
Query: 1411 LRSFSPIGPLIMVELLELPHQAKEMNGWTIQQVSNNSLQRIPYGVKTQQPSVSSINQSTVSIHSRKSDALGYNLPIAFSFSIDDKILLHEAPQLARWDEESQHWKTSEITDIRYESEDKLMFFRTLHFGTFALMQDIYLNMPFQTWTIRPIAMNECIFTIVGAFIEVDIVVKENLC---SVKFPEVKPQVEHIVGKWVKPQELIKMLRAVGINLFPYRDGDKYVSICKKEESFVDTLYQHMAVSASCCSYTWSKWNSDIGQEKVVVQACEWNSPKIPSEESYQLYLASERICCKLKMTEYDREFSEEIFPQTQMHPGLYHMIRDGGSDEMMRKLKETSVVFIDCVHQLLSATNVFMYS 2475
L F+ +G + +++LELP Q K + GW I ++ LQ+ Y P ++ T + PI + + + ++ E P + RWD E +HW+T I+++ Y+ +++L+ F FG L+QD ++NMP+Q+W +RP+ +N+ + T+ F E+ I +KENLC S+K + K + + G W+ P I L+ G+N+FP R YV I K Y+ MA+ +S ++ WSKWN KVV + E + ++ L + S +LK+ E FSE + +T+ H LYHM++D S+E M K++ ++ F++ V +L +T + YS
Sbjct: 376 LCQFTTLGGVYHLDILELPPQCKPVKGWMIVEILKEGLQKYTY------PPETTEEFETENAFP----------PIEVTLEVHENVIFFEDPVVVRWDAEGKHWRTDGISNVSYKPKERLVTFSLDTFGPVTLIQDAHINMPYQSWELRPLDVNKVLLTVTTVFTEIQIQIKENLCMLSSIKLKD-KKHISILEGTWMTPIPFIIALKEAGLNIFPTRHSHFYVIINNKVPLVEVKAYRQMALLSSAFAFGWSKWNLLCNSTKVVFKVREHLTEACTENPNWALLMFSGDRAQRLKIKEESEAFSEALKEETEFHSTLYHMVKDFASEEAMEKVRSSNCQFVNSVCHMLLSTRLLSYS 716 HSP 2 Score: 88.1965 bits (217), Expect = 1.042e-17 Identity = 56/180 (31.11%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 439 KWDRYMLCDGRPDPSSKKDVNTFINLTKEDHTNIDMKETLANCEMILELLEELKDHLNEAKLALXXXXXXXXXXXXXXXXXSYKESTMDLQNLIFAKLDESAFDILHTPEHAIDPDTLNISQVEESPRFKMCLWGNASRNPRVKQVEFPNDGFTMELPKQMVLTNIATRSLYIRYDFLSS 978
+W Y+ CDG PDPS +++NTFI+L KE TN +E + +++L L+E+LK L E +K I Y+ES + LQ L+ K + +L D D+ N+ +V + + +W N +NPR + V F E+P+ + ++IA R L+ YD +S+
Sbjct: 94 QWKHYIQCDGSPDPSVAQEMNTFISLWKEK-TNETFEEVIEKSKVVLNLIEKLKFILLETPPC----------DLQDKNIIQYQESILQLQELLHLKFGVATEILLKQASTLADLDSGNMEKVIKDENVTLYVWANLKKNPRHRSVRFSETQIGFEIPRILATSDIAVRLLHTHYDHVSA 262 The following BLAST results are available for this feature:
BLAST of TCONS_00004861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.