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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004870 ID=TCONS_00004870|Name=TCONS_00004870|organism=Clytia hemisphaerica|type=transcript|length=3723bpRun BLAST on NCBI transcript from alignment at sc0000049:521398..526861+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004870 ID=TCONS_00004870|Name=TCONS_00004870|organism=Clytia hemisphaerica|type=transcript|length=5464bp|location=Sequence derived from alignment at sc0000049:521398..526861+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004870 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 1.914e-64 Identity = 151/430 (35.12%), Postives = 209/430 (48.60%), Query Frame = 1
Query: 481 NRLNGFPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCYCTLCPQRVFSSHKDLMDH 1767
NR + C C +V + L H RIHTGEKP+ C C FT ++L H + HTGEKP+KC+ CG F+Q ++L GH R H GEKP+KC CG+ F A L TH+ IH + +KC C + + + H + HT + + K ++L TI G K + CNEC V L H+R HTGE+PY C+ C S L +H + H+ EKPF+C C K F Q HL H++IH K +C +C A+ S L +H H +KP+ C DC F + L H+ K Y CD CG F++ L +H RV E+P+ C C + F S+ H H +K Y+C C KVF+ L +H++ G C C + FS H +L H
Sbjct: 108 NRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASH-RRIHTGEKPYKCNECG--KAFSVRSSLTTHQTIHTGEK----PYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIH--TGEKPYKCNDCGKVFTQNSHLASHRGIHSGEK--PYKCDECGKAFSQTSQLARHW-RVHTGEKPYKCNECGKAFSVHSSLTIHQT-IHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECG-KAFSVHSNLATH 523 HSP 2 Score: 218.009 bits (554), Expect = 1.531e-59 Identity = 149/426 (34.98%), Postives = 198/426 (46.48%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCY-CTLCPQRVFSSHKDLMDH 1767
+ C+ C +V + +L H RIHTGEKP+ C C F + L H + HTGEKP+KC CG FTQ + L H R H GEKP+KC CG+ F L TH+ IH + +KC C + + + +H + HT + + K + L I G K F CNEC V T L H+R HTGE+PY C C S L H H+ EKP++C C K F Q HL H+ IH K KC +C A+ + S L HW H +KP+ C +C F L H+ Q Y C+ CG VF L H +R+ E+P+ C C + F ++ H + H EK Y+C +C KVF L H +R H K Y C C + FS L H
Sbjct: 169 YKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKH-RRIHTGEKPYKCNECG--KAFSMHSNLTKHQIIHTGEK----PFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVH--TGEKPYKCNECGKAFSVHSSLTIHQTIHTG--QKPYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECGKAFSVHSNLATHQV-IHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNECG-KAFSVRSTLTTH 579 HSP 3 Score: 177.948 bits (450), Expect = 2.797e-46 Identity = 114/338 (33.73%), Postives = 162/338 (47.93%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKH 1506
+ C+ C +V L H RIHTGEKP+ C C F+ ++L +H + HTGEKPFKC+ C FTQ + L H R H GEKP++C CG+ F L TH+ IH + +KC C + + + H + H+ + + K + + L + G K + CNEC + SL IH+ HTG++PY C+ C S L H H+ EKP++C C K+F +L HQ IH K KC +C + + S L +H H +KP+ C +C F L H K Y C++CG VF + NL KH
Sbjct: 281 YKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECG--KAFSQTSQLARHWRVHTGEK----PYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH--TGEKPYRCNECGKAFSVRSTLTTHMAVHTGDK--PYKCNQCGKVFTQNSNLAKH 607 HSP 4 Score: 162.155 bits (409), Expect = 3.725e-41 Identity = 93/254 (36.61%), Postives = 126/254 (49.61%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIH 1257
+ C C + + + SL H IHTGEKP+ C C FT + L H H+GEKP+KCD CG F+QT+ L H R H GEKP+KC CG+ F L H+ IH + +KC C + + + H Q HT + + K + L I G K + CNEC V T L H+R HTGE+PY C+ C S L H+ H+ +KP++C C K F Q +L KH++IH
Sbjct: 365 YRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECG--KAFSVHSNLATHQVIHTGEK----PYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIH 611 HSP 5 Score: 125.561 bits (314), Expect = 1.994e-29 Identity = 76/228 (33.33%), Postives = 107/228 (46.93%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSS 1179
+ C+ C +V L H IH+GEKP+ C C F+ + L RH HTGEKP+KC+ CG F+ +SL H H G+KP+KC CG+ F L H+RIH + +KC C + + + H Q HT + + K + + L + I G K R CNEC + +L H HTG++PY C+ C S L +H HS
Sbjct: 393 YKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATH-QVIHTGEKPYKCNECG--KVFTQNSHLANHRRIHTGEKPYR----CNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHSG 613 The following BLAST results are available for this feature:
BLAST of TCONS_00004870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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