TCONS_00004896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004896
Unique NameTCONS_00004896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004896 ID=TCONS_00004896|Name=TCONS_00004896|organism=Clytia hemisphaerica|type=transcript|length=560bp
AGGCTGGCAAAGGAAAAATCAATGTTCAAGATCATCACAACAGAACACCG
CTGtacatggctGTCGATAAAAATCACATGAAGGTTGCCGAGTTCTTGGT
AAAAGCTGGAGCAAATATTTTCTGTCAGacaaCTGAAGGCACAAATCTAC
TTCATGTTGCATCTCGAAGAGGCAATCTCTTGGCTGTCAAATGGTTGATC
AAGCTAGGTGTTCCGGCTAACCAGCAGGATAATTTCGGATGGACAGCCTT
AATGTGGTGTGCAGAGTCGGACAATAACAGCTGCATAATACGTTATTTAA
TCAAGCAAGGAGCTTTAACCAACCTACTAGATAACgAGATGAATATTTGC
TTGCATTGGTCAGCGATAGCTGGTTCATTCGAATGTGCTAGAGAACTCGT
CTCTGGTTCTTCTGATCCGCAAATCAACGCAAAAAATAAATTCGGAGAAA
CACCTCTTCATGTTGCAGCGAAAGGTGATCATTTCAATGTGGCACAATTT
CTTTTACTGAATGGGGCAGATCCgaatattaaaaacaaacaaaattgcaC
TGCTCTGGAG
Run BLAST on NCBI

transcript from alignment at sc0000049:134712..141988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004896 ID=TCONS_00004896|Name=TCONS_00004896|organism=Clytia hemisphaerica|type=transcript|length=7277bp|location=Sequence derived from alignment at sc0000049:134712..141988- (Clytia hemisphaerica)
AGGCTGGCAAAGGAAAAATCAATGTTCAAGATCATCACAACAGAACACCG CTGGTAGGCTATCCTCATTCTTTCTTTGTTATTCCTTTAACCCTAAAGAA CTGTTCCTTAATATTATAGGGTAGGTTAAGAAATTTATGTTAAAGGTGTC AAAGAGGTTGCAAAATGCTTGCTGATAGTGAGGTCTGTTAGATGATCAGA TGATCCTTAGAGGGTCTAAAACTTAATTTTAAACAGTAACACCAAATTTT GCCACCTGGCCACCTGCCAGATGACGTCATCAGGTGGCTGGGCAAAAAAA TATTTTTTTGAAAATATTCAAAATCTGATGGTTCCAGCGGAAAGAGCATG AAATGCTGATGAAAATCGAGGTATAAAACATGCCTTGAAAATTTTCCTAT CAAAAGTTATGAAGGTTGAAAGTTTTGTGATGACATCATCATAAGCCTTT CCAGGCAAACCTAAAAATCCCGTACTAACGGAACTAGTTGACCAAATTTG GTGTTTTATACATGAATCCATGTTAAAATTCGAAGTTCCTTCTGATGCTT AAGTCTAAACGACATAGGAAGGCTTAAAACATCCAACAAAATTAGTCGGT TGTACACTGTGTTCCTGAAGGGAGAACACTGCGTTAATTTGCCTTGTAAA TCTCATCTCAGACTAAGTTTTAGTCTTCTATAGGATCTAAAGCTTTTAAT TCAATTTGAACATCAGAATCAGAACGAGAAATAAATTTTGATATGAACTC ATGTATAAAACACCAAATTTGGTCAACTAGTTCTGTTATTACAGGATTTT TAAGTTTTGCCTGGAAAGGCTTATGATGACGTCATCAAGCCTCATACTAT TGTAAGGGTAGACCGTCGATAAATGCAAAGAAAATGAAACATTCTACCGC TCCTGCTTTTCTTTTTCTTTTTTCAGTACATGGCTGTCGATAAAAATCAC ATGAAGGTTGCCGAGTTCTTGGTAAAAGCTGGAGCAAATATTTTCTGTCA GGTAAACATTTCATAATTTTTAAGTATTTTTCGATTTTCAAGGTTTTTTC GATTTTCAAGGTTTTGCTAGCAACTAAAAGTGATTTTCATCTTTTTTTTT AAGACAACTGAAGGCACAAATCTACTTCATGTTGCATCTCGAAGAGGCAA TCTCTTGGCTGTCAAATGGTTGATCAAGCTAGGTGTTCCGGCTAACCAGC AGGTTAGAAATTTTACTTAGAAGTATAGTTAAATCTGAGGAGGTTGTGGA TCAGGCAAACGTCTTGTACTTTCTAATTTTTATTAATTTATATTATGATC AAGGTTCGTATCAACTATATTTTAGTACTGATTTTGCTAGGAGACGAAAA TAACTCTAATAGCTGTATAAAATAATACCTTTTGCACTTTCAAGGATAAT TTCGGATGGACAGCCTTAATGTGGTGTGCAGAGTCGGACAATAACAGCTG CATAATACGTTATTTAATCAAGCAAGGAGCTTTAACCAACCTACTAGATA ACGTAAGTTTTCACTAATTATTATTTTCAACAATCTACTTATTAAGACCC TCTTACTCAACCTAAAACCTAGAATTTAGTTGGACGGCGTAATTTCTTCA CTTAAGAAAATTACAATCTGCCCAAAGAGAGAGAGATTGGGCTATTCTAT ACCCCATGGGAGCAAACCTTTATGTATGTTGTCTATGCTTGGTTACATAA TAAGTGGGGAATGAGGGAAAAGGTTATGGAAAATACCTGAAAACACAAGA AGTGGATTTTCAAAGAATGTATAATCAGTGGTGAAATTGAAAATAAGTAA TTTTTGTATGTAATAAATCTAAACTCAAAATATTTCATTAAATTTCGTTC GAATCATTTAACTTCTAACAGCACCTTAAATTTTTCTTTATCAGGAGATG AATATTTGCTTGCATTGGTCAGCGATAGCTGGTTCATTCGAATGTGCTAG AGAACTCGTCTCTGGTTCTTCTGATCCGCAAATCAACGCAAAAAATAAAT TCGGAGAAACACCTCTGTAAGTCTCTCCTACATTGAAATGATTGAATAAT CATTTAAATTAGTTTCAATTGACAAACTAGAATAGGTGGATTAACAAGCA TACGGGAAAATCGGGTCGAGGCTCAACATGCTTACCAAACTCTCTAGGCC ATTTATTCTACGAGTTTGCTACAATCAGCGACAAAATACTTGGCACAAAA GGGAAATTCACCGGGAAGTTTTGAAACCACAATCGATTTGAAAGTGCTGT AAAGTAGGTTCGAAGAGTTCGTAGAGTTTTAACTCTGAGTTTTAACGCTA GACTTAAGACTTTTGAGGATCTGATCTGAGGATCCAAAAGTTCAAAAATG GTCCAGCAGGGCTTGAAATATAGAAACTAGAAATCCATAAATCCCTCCTA GATCGAAATAATCGATGAAATCAAGTTGAAGGCCTGAAATTGACATTCTC GCTCGAACTTCAATTTTTGAAAAATGGTAAATTAGCCTAAAGTGCCAATA TGTTATGGCACTGATTGTAGCAATAACAGCCTGATAAGTTACAAACCACA TGTTTAAAACAATTATATCTGTAATATTGTATAATATCGCGTGGTACATT CTTGTTTGAGCCTTTGATATCTGAAACAAGAATGCAAAAGTTGAAAAATT ATTTTGAAAATATTTTCTCAACTAAGGCGAGATCAAATTAATTTGTTCAA TCAAATTGGTTGATCCTCCTGAATGAGTTCAATAAAAATTTTTAAACACA GAAGCGACTTCATTTTATTTTTAATAAAATCAAAATTTATTTAAGACGTT TCGGTGTCATCCGACCACCATCATCAGTTTAAAAACATTGAAATGAAAAT TTCTAATCTGAAAATTAATTTGTTGTTTTACGGGCCAAACTAACCAAGTA AGAGGGTCGCTCGTTCGGGGAAAAAATGAAAATAAAAGTAGAATTCCACC TATAAAATCTCCTAAAAAGTAGCAAATAGACACTGAAAGCTCGAATTCAT GGATAAAATGAAAAATTAACATAAAATCCGCAAAACCTTGGAAAAACTAC CAAAATTTTGAAAATTGGATAGTCTGTAGAGCAATGAAAATAAAAATGTG CTACCAAAATCAATTTTTATTATATATTTTTATTTCCATTTTTGGAATTT CAGGGTCAGTTGGGCCCGTAAAACAACTAATCAAATAAAATTGGTCTCGC CTAATAGACATAAGTTTTTTACTGATAAAATATCTGACCAGAAATGTGTC GTGCTCTCTTAAAAGACTCAACAAAAAGACTCAACAAAAATGAGCAAAAT GATCGGAATATCATTTTAATTTTTTCTCATTTTAATAATACAATAAATTC GTTTGAATGTCTGAATAGTACTGAATACATATAACTTGGATACTTATATT ATAATAATAATTAAAACTATGTTTACATGTTACCCCTCTAACTTCTTTTG CAATACTCAATATTCTACTCGTTCCGAGATTTAACTAATATTTTATAAAA ATATTGCGGAACAATCTCAGAACTCGTAAAATATTTTTCGTACTGCACTC GAAGTCATGCGATAACTATTACATATTCTCGGGCTTATATGAAAATTGGT GCATTTATTCATAACATAATTACTTTCAAATAATCTTAAGCTGAACTCAA TTGATTTGTCTCTGTTTTCAATTTTGTATATTAAAATGTGCTTAAAAGCG TTATTCTTATAAAAGAACGTACTTAAACTGTCTTCATGGGTTAAATGATC GGGGTCTAATCATAAGAGTACTGTTTTTTAATGATACATCCAGTGTTTTC CAGCCACCCCACATGATTCCGTTTGCAAAACTAACTACTGCAGCATTGGT GCTATATTTTCCATTCATAGCCACAGCATGGCACCCTTTATGCCACCACG GTCCAAATGATTGTGCGCAATTCATAGTCGGGTGAATATCATTTTCAACT TGCGCTGTGGAGAATTTGGAGCCGTGCATACTGCCCATCCCGTACGGATA GTTTGGACTGAACTCTGTCAATTCCTCTTCGAAAGTGATCATATAACCTT GCGACTCATCCTCCACTCTTACGCGTAGCATTTTCTTCATGGCTTCAACA CCATCATAACTTTTTGCCCAGACAAGATAATCATACTTTTCTGAGGTAGT GAGTAAATTCAACCATTTGTTTCCTAGCCAAAACTCATTCTCAACGTCAC CAAATCCCTCTCTATATGCAGCCCTTTCTTCGTTAAAAAAGTCCACGCTG CCGTCAAATCTTCTTTGAAAGATCATCCATCCACCTCCATCTAGAACCAT ATTACAACGAACTTTCTTCCGAAACTTGCCCAATAAGTTGACTTCATACA CACCGCTAGTACGCTCTCCTAATTTGTACCACTCAGCGCAATCTTTTGGT AGAGCAATCGAATAGTACCTCACACCTGGATTATCAAGCAATGGTAACAA GGTGCTGTAGATCTGCTGGTAGAAACGACAACCAGTGAAAATTGTAGATT GCCAGACTTCAAATGAAAAGCATTTTGATGAATAATGACAAACACTAAAG CATTTTTGATATGGAGCACCTTCAATAGAGTCGTATGGTGTCCCCGATAT TGATTTCCCTGTTGCAATTAAGTCGTAGATTTCTCCGGATATTTTCCCAA GAAGGAGAAACAGCTTTAAAAACAGCAGAATTGCCATACGTTTGCTCCTC ATTTCGCTAATTAAATTTTTCCACATATCTTTAACATGTTTATTTTCGAA TTGTTTAAGAGAAAACCATAATTTTGTTATCGCCTTGACAGTTCAATGCT TTTTTGCTTTTACTATGAATCGGTCTAAAATAGATTCCAGTCCCCACTAT TTATTAAGTATTTATGAGTCTACATACCCCCTGTTTGTGCAGGTTTGTGT CAATAGTTAAAACAAACTGAATTTTAAATGAAGTATCGCTGATTGATATC TGTATGTGTGAATAAATTCATAGAATGGGCTTTTCCAGAAATAGTCCGTG CCCCCCCCCCCCTGTTGAGGATATCGGATATCCAGGGGGTTAACGGTTTT TGTTCAAAAGTGGATATCAAGGGGGATAAATATCTACAAGGGAGCGAATA TCCAGGGGGTAAAGTGTCTTTTCAAGTAAAAAATACGATATCCAGGGGTA AGCATCTTTATAAGAGAGGATATACTGGGGTCCAGATCCAGCTGACAATT TCAAATAATATAATATAAAAGAAAGTCCGAAAATGTTCATTTTGACTTTT CAATACATGAAAAACAACAAAGTGAGTTTTTTTTTAATTACAATATTTCC ATACTCAAAACTAGTACATCATTCAGGTAAAACTTTTACCTTTACTTTTA CCCTCATATTCTTATCGGAATTAAACATTAATTTTTTTAAACACCGCGAT CCATGGACATTCGAACGACATGTCCTGCATAATTATTTTGCTGTTTTCGA ATGAAACTACTGACGTCTTCAGTATAGCAAAAATCATGAAGCTTATTTTT CAAGATGCTAGTATTCATGATATGCATATGGAGAGTCTCCTGAGAGCTTT TAAAACTTTCCACCCAATACGCCACTTAAACAATAGAAAAAGTGACGTAT TGGGTGAAAAAGAAAACAGAAAAGTTGAAGTCATTGCAGTGGTGCATATC ATGAATTAATAGGAAAACACAGTAATGCTGCTTCAAAATAGGTTTTTAAT GACCCATATATATGTGAATAGTGAAAATATGTAATATCTGTAATTATAGA AAAGAAAAATATTGATGAATGAAAAACTAAGCCCAATCCCCTAGAAATTA GTCTGATTGTAAATGATTTATTTTATTCGTCTCTTTTAGTCATGTTGCAG CGAAAGGTGATCATTTCAATGTGGCACAGTGAGTCTTTTAATCTGTACCC ATTGTAGAAGAACAAGTAACCCTTCAAAGTTCGGAAAATTTCTTTATTAA GGAATAAATGTTTCTTCTAAAAAGTGTTCGAAACAACTCTTTGTTCGAGA CAAATTAAGGGGACGGAGACCTGTAGTTCTAATAATGATTTTTTTTACGT TTTAGATTTCTTTTACTGAATGGGGCAGATCCGAATATTAAAAACAAACA AAATTGCACTGCTCTGGATGTAGGTAATTTTCATTTTGATATCGCTTGAA CTTTCATTCGCCAAACGATAACAACGCCCATAAGATAATGCGGCAGTAGT TAGGTGCAATGAACAAAGCTGGTATTGATAACTGCGAATACAGTCTTTTT TATTAAAGAAAATTATAAGGGCTCAAAATCGTTGAAAATAAGTTGACGCT GAGCCTAAATTTCAGAATTTCATGCAATGTTAGGGTCAAAGTCTAAAAAA TTTGACATAATGCTTAAAATGACACGATTCGGGTTTACAAACAAGAACGG GATAAGAACAATTTAAGGCTCAAAGTGTAAGAATAAGAAGATAAGAACAG CCGAGACAAAGTAAATATTTACCGGTTCTTAAAAAATACCTTATCGGGGA AAACTTCGTCGGGGAAAAGTGACGAAATTTTGGCCAAGTGACGAATATTT TTCCCCGACGAAAATTTTCCCCGGCCTTAATGCGTTTACCAACTACCATC AAGTGACGAATATTTTTCCCCGACGAAAATTTTTCCCGACGAAATTTTCC CCGATAAGGTATTAGATTATAATTATACGTTAACCGCTTCTTTTCCAATC ACAAAGTGTTGAAAGCATAACATCGACTTGGTAAAATGAATAAAAGAGTT CACATTACAATCCCCTATTTTAAAGCCCCCATAATAACCTCTTCATCAGG CTGCATCGTTTGAGGCGTGTGATAGCACGCGCACACCTCCACACACACCT AAAATCTTTGAGGAGAGTGATTAATCACACGCCATAAATTTGGATTNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTAAAGTTATGCATAGCA CTCCTTATCACACGCCTAAAGTACTTTTTAGGAGTGCGATTGACCACACG CCTGGAATTTTCAAATGACAAAGCCTGCTTCATATAGGATAGAACTCATA AATGAAACCTGAAACAATCTTAGTAGGATCTTTCAACTATTCTGGGAAAA TATAAACAATTTATTGACTTTGCTGAACTAAACTGACGAGTTTGACATGA TTTTGACACAACTCTTTTTTGTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002771XLOC_002771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004896-exon-sc0000049-1575043694:141936..141988TCONS_00004896-exon-sc0000049-1575043694:141936..141988Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:140988..141062TCONS_00004896-exon-sc0000049-1575043694:140988..141062Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:140787..140885TCONS_00004896-exon-sc0000049-1575043694:140787..140885Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:140487..140594TCONS_00004896-exon-sc0000049-1575043694:140487..140594Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:139973..140094TCONS_00004896-exon-sc0000049-1575043694:139973..140094Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:136111..136149TCONS_00004896-exon-sc0000049-1575043694:136111..136149Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:135872..135933TCONS_00004896-exon-sc0000049-1575043694:135872..135933Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1575043694:134712..134713TCONS_00004896-exon-sc0000049-1575043694:134712..134713Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:141936..141988TCONS_00004896-exon-sc0000049-1510915933:141936..141988Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:140988..141062TCONS_00004896-exon-sc0000049-1510915933:140988..141062Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:140787..140885TCONS_00004896-exon-sc0000049-1510915933:140787..140885Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:140487..140594TCONS_00004896-exon-sc0000049-1510915933:140487..140594Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:139973..140094TCONS_00004896-exon-sc0000049-1510915933:139973..140094Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:136111..136149TCONS_00004896-exon-sc0000049-1510915933:136111..136149Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:135872..135933TCONS_00004896-exon-sc0000049-1510915933:135872..135933Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1510915933:134712..134713TCONS_00004896-exon-sc0000049-1510915933:134712..134713Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:141936..141988TCONS_00004896-exon-sc0000049-1491911889:141936..141988Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:140988..141062TCONS_00004896-exon-sc0000049-1491911889:140988..141062Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:140787..140885TCONS_00004896-exon-sc0000049-1491911889:140787..140885Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:140487..140594TCONS_00004896-exon-sc0000049-1491911889:140487..140594Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:139973..140094TCONS_00004896-exon-sc0000049-1491911889:139973..140094Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:136111..136149TCONS_00004896-exon-sc0000049-1491911889:136111..136149Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:135872..135933TCONS_00004896-exon-sc0000049-1491911889:135872..135933Clytia hemisphaericaexon
TCONS_00004896-exon-sc0000049-1491911889:134712..134713TCONS_00004896-exon-sc0000049-1491911889:134712..134713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:134712..141988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.870168 2.25991 0.553068 0.73454 1.21979 2.72829 4.52509 2.23577 4.58687 4.81129 5.30334 3.45463 1.49554 4.90758 1.31179 4.87273 1.63689 3.86745 0.927821 1.47688 2.75773 2.4265 1.78881 2.15983 0.343329 1.47164 1.15952 1.40787 3.07473 2.58699
Blast
BLAST of TCONS_00004896 vs. Swiss-Prot (Human)
Match: EHMT2 (Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 5.688e-37
Identity = 72/180 (40.00%), Postives = 107/180 (59.44%), Query Frame = 3
Query:   18 INVQDHHNRTPLYMAVDKNHMKVAEFLVKAGANIFCQTTEGTNLLHVASRRGNLLAVKWLIKLG-VPANQQDNFGWTALMWCAESDNNSCIIRYLIKQGALTNLLDNEMNICLHWSAIAGSFECARELVSGSSDPQINAKNKFGETPLHVAAKGDHFNVAQFLLLNGADPNIKNKQNCTA 554
            IN  D   RTPL  AV  NH++VA ++V+ G  ++ +  +G+  LH A++ GNL  V  L+  G V  N QD+ GWT ++W AE  +   +IR L+ +GA   L DNE NICLHW++  GS   A  L++   D  ++A N  G+TPLH+AA+  + +     L  GA+P ++NK+  TA
Sbjct:  711 INAVDKQQRTPLMEAVVNNHLEVARYMVQRGGCVYSKEEDGSTCLHHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIE-VIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLLNARCD--LHAVNYHGDTPLHIAARESYHDCVLLFLSRGANPELRNKEGDTA 887          
The following BLAST results are available for this feature:
BLAST of TCONS_00004896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EHMT25.688e-3740.00Histone-lysine N-methyltransferase EHMT2 OS=Homo s... [more]
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