TCONS_00004911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004911
Unique NameTCONS_00004911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004911 ID=TCONS_00004911|Name=TCONS_00004911|organism=Clytia hemisphaerica|type=transcript|length=704bp
aaaatattcCCGCcaaataaacataaacatttcGAATCTTTCATTATTCG
AATCAGTCTACATTTTATTTGGAATCCTCTGTCAgtgtgtttgaaaatat
ataaaaaaacatttggaAGTTCCCATTTCTGGAGCCGGAAAAAAAGTCAA
TATTATAGAAGATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAATCT
GAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCCGA
AGAAGCCCCGGCGATAAGTGGGAAAGGAAGAAAGCGACCAGCACCACATA
TTTCGCATACGTATTCAGATGACAGTGACAGcgaagaaattaaaaatgac
gAACCTTCAACTGGTGTCGAATCTGAGATGAGCACATTGTTGAATAGTTT
TGGAGAGAGAAGATGCAAGAGGAATTCGGTAAACAAATTTCATCAGTTTT
TACGCAATGGGAAGGAGATATCCAAAAATCGAAAGATGCTGAAGAAAAAC
TCGAGGCAATCGTTCGTCAGTTACAGAAGACATTACAACAACAGCGGGTC
GTTCAGAACCAAAGACTGAAATCATTGAGAACATTACAAGATCAATACAT
GAAAGGCTTGAACGATCTGTCTAAGATGCACCGTGAACAGCAATTGAACA
TCAATGCTGAGCTACGAAAAGATTTGTCCAACTTACAAAAGAAAATGATG
GACG
Run BLAST on NCBI

transcript from alignment at sc0000049:345818..349498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004911 ID=TCONS_00004911|Name=TCONS_00004911|organism=Clytia hemisphaerica|type=transcript|length=3681bp|location=Sequence derived from alignment at sc0000049:345818..349498- (Clytia hemisphaerica)
AAAATATTCCCGCCAAATAAACATAAACATTTCGAATCTTTCATTATTCG
AATCAGTCTACATTTTATTTGGAATCCTCTGTCAGTGTGTTTGAAAATAT
ATAAAAAAACATTTGGAAGTTCCCATTTCTGGAGCCGGAAAAAAAGTCAA
TATTATAGAAGATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAATCT
GAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCCGA
AGGTTTGTGGTAAAATTGTTGAATTCAGGCCCGAAGTTGACGTATTTGAA
TTAATTTTATCCTGAACACAACAAATGTTTTTTATGGGAACGTGGAAATT
TTTAAAGTCTGTGGATGTTCTTAACTTTTTGAGTTTTTAAAGCCAGATCA
ACTCAGATCATATACATAAGAACAAAGAAGAGACTGGAACAAGCAAACGG
ATTGGCCAATGTTAACATAATGCCTAGGACATGTTAGCCACTCAGAGATA
TCAAAGGCTTTTTGATAGACTGGATGGTGTAATTTGGCACGCTCCATTTT
TTGGCTTTGCTTGAAGGGGATAGCAAATCTCTGTACCGTAGTCTGGTTTC
ACAATCTTGTCTGTGACATGTCTCTTTGGAGTATATGTGGTTTCCAGTTA
TGGAATTCGCAGGTTCAGGGAAGAATGAGCATTGATTGGTTAGTCATGTA
AACCTAAGTAAAAAGCCCTAAACCCGCAAACCTAGGTTTAAAAAGCGTAA
ACCTAGGTTTTAAAGCATAAACCTTGGTTTACGGAGCGCAAACCTTGGTT
TACGGAGGGCAAACCTAGGTTTAGGAAGCGCAAACCTAGGTTTAGGAAGC
GCAAACCTAGGTTTGAGATATTTTTGTGCATTTGGGCTTCCATAGAAAAT
AATTAGTGTTTCCACAAAAAACATTAGTAGCCAGCCTGAATAGCCAGCCA
ACTAACCATATGAATAAGGCCGTGTCCACTTTAGTCGTAATTTGAAAATA
TTATTTGTTGCCGGTTGGAGAGGGTTCACCAATTGGTAAAAATTTAGGTG
ATTGTAAACCCGATTGTAATCGAAGGGACTCCTCAGTGGAGAATTGTTGA
TTTCTTAGATGCCTTAGTTTGGGGTTGGTCGTCAGACAAAATATGACCCG
TCAAAGATCGTGCGACTTTCCGGACAAAAAAGTAGTCGGAGTAGACAAAC
TTCCGCGCTGATTCTATTTTGTCTGGATTCGGACTGTTTTGTTGTCGGAC
TAGTGAGATGCACCCGTTTTAGGTAACGACCGTACAGTGTGGCTAAAAAT
TAGGTTTTTGAAATCGGACCCTTATAGTGCAGAGAAAATTTAGCCAAACT
TGAGTTAATTTTGGCGAAAATTTGACCCTTATGGTGCAATTTCTTGAAAA
TTTTGGACCATTCTAGGCAAATTATGGTAAGATTTTCGAATTTTTTTACA
CCCTTAGAGTGGACTTTTCTCATCTTTACTCATTTTTACCCTTAAAGTTT
GTACAGTCAGACAGTGCACTTTGGGAAGCTTTGAAAAGGGATCCTCAAGG
GCCGCACGTGCGGTAGGTCCTTTACTTTGAGTACTTCCCGGAAAATGTTC
TCAACTTGTTCTTGATAGTTTGGCCATCGAAGCCTTATGTTCATATATAG
TTGTTGTTCTTATAAAAAACGTGTAATATAGTCGCAAATATGAGAAAATA
GCAAAGCCAAAGATGAAATGTGATATTACAAATTATCTGATGAACTGCAA
AGCCGTTTTCATCTTTTTGATTTATAGAAGCCCCGGCGATAAGTGGGAAA
GGAAGAAAGCGACCAGCACCACATATTTCGCATACGTATTCAGATGACAG
TGACAGCGAAGAAATTAAAAATGACGAGTAAGAGCTACATTTTCAAACAT
AGAAAACACAAAGAGACTTTAAAACTCTACCCGCCCGGAGGCCTTTTTTT
ATTTTTTTGACCATAGTAGTCGTCTTTCCAGTAAAAACCTTATGTGAAAA
AAAGATGGTTTTCTTTTTGATTCTTTCTAGACCTTCAACTGGTGTCGAAT
CTGAGATGAGCACATTGTTGAATAGTTTTGGAGGTAAGCAAAAATATTTT
AAAAAGTCGGAGATAAGTTCTGACACAATAAAAACATCACACTCTTTGGA
AAGGTTTGCCAGAAAGTGTACAGGCCCGATGGGACCTTCTTCACTTGATA
TATTGGCCAAAATAAATCGTCCACAATGATTGTTGAGCTATACTTGATAT
AATTTAAAATGTCAATCTATTACAAGATCCAATGCCAGCGATATTAAGTC
TCTTCATACCGACTATTCGGGAAGAATAGGGTTGTCGTTTCAAAAACAAA
TAGTCATTTCCATGCATGGCCGTTCATCGTTCATTCTCCGATCCTTCTCA
TTTTGTTTTAGCTGACATCTCAAAGACACTTTCTGCAAAACGAAAACGTT
TGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAAATACGAT
GAAATATTCACTACTCAACACGCTGAAAGGTATTACGAGATATTCTCGTT
AAAAAGAGTTTTATCTGTTCTAAATCGGAAAGTTCCGTCTTAAAAGTTTG
CGTATCATTTTTGAACTTTTGTCCAATTAAGCTATATACCAAATATGTCT
TACTTTCTTTGACAGAGAGAAGATGCAAGAGGAATTCGGTAAACAAATTT
CATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAGATGCT
GAAGAAAAACTCGAGGTATAAGACTTTTAACTTTATCTAGCCCAGATGCT
CGTCACACTCTTCTCGAAATGCATAAATTTATTGTTGTCCTCGTTTTCAA
ACAGATTTTATTGCTATGAAATTATATATTTAAGGCAATGTAATTACCAA
AAGGCAAACATTAACTCTAAAACAAAAGCACTTGAAATTCAAAATGTCTC
ATGAGGTGTAAACAACACAATTATCATTGTGAATATGTAATTTTATAGCA
ATGAAATCAGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGA
AGAGTGTATATTGGCAGATAAATTTATAGTAGTATGCTCCAGGAGAGACC
GGTACAGCCGCAGGGTACTAACTCTTATTTCCGAAAAATTTATCTTAGCC
ACCCCCCTCTTTAGTACCTGGCACTAGCTTTTTTGAGGAAAAAAGGGACC
CCTAACCCCCCCTATTTAGTGGCCGATTGCCATACCGTGGTGGTACACAC
GTATGAATATTACATATCAAGCTGTGAAGACAAATCTTGATTTTATTCAA
CCGAGAACAAAAGTAACCTTAGATGAAAGCCGTACCAGTCAAACCACGAA
TGAGAAAAGTATCAGGTACTTACTTAAGTATTAGCCACTAGCCAGCTATG
GGTCAGTACGCCGCGGCTGTACTCCCTGTATGAACTCAGAATGATAACAC
AGGGATGATCAATATTTTGTTTTCGTATCCAGGCAATCGTTCGTCAGTTA
CAGAAGACATTACAACAACAGCGGGTCGTTCAGAACCAAAGACTGAAATC
ATTGAGAACATTACAAGATCAATACATGAAAGGCTTGAACGATCTGTCTA
AGATGCACCGTGAACAGCAATTGAACATCAATGCTGAGCTACGAAAAGAT
TTGTCCAACTTACAAAAGAAAATGATGGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002778XLOC_002778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004911-exon-sc0000049-1575043694:349247..349498TCONS_00004911-exon-sc0000049-1575043694:349247..349498Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1575043694:347622..347721TCONS_00004911-exon-sc0000049-1575043694:347622..347721Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1575043694:347416..347468TCONS_00004911-exon-sc0000049-1575043694:347416..347468Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1575043694:346734..346833TCONS_00004911-exon-sc0000049-1575043694:346734..346833Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1575043694:345818..346016TCONS_00004911-exon-sc0000049-1575043694:345818..346016Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1510915933:349247..349498TCONS_00004911-exon-sc0000049-1510915933:349247..349498Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1510915933:347622..347721TCONS_00004911-exon-sc0000049-1510915933:347622..347721Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1510915933:347416..347468TCONS_00004911-exon-sc0000049-1510915933:347416..347468Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1510915933:346734..346833TCONS_00004911-exon-sc0000049-1510915933:346734..346833Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1510915933:345818..346016TCONS_00004911-exon-sc0000049-1510915933:345818..346016Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1491911889:349247..349498TCONS_00004911-exon-sc0000049-1491911889:349247..349498Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1491911889:347622..347721TCONS_00004911-exon-sc0000049-1491911889:347622..347721Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1491911889:347416..347468TCONS_00004911-exon-sc0000049-1491911889:347416..347468Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1491911889:346734..346833TCONS_00004911-exon-sc0000049-1491911889:346734..346833Clytia hemisphaericaexon
TCONS_00004911-exon-sc0000049-1491911889:345818..346016TCONS_00004911-exon-sc0000049-1491911889:345818..346016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:345818..349498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	8.9899e-06	0	0.559207	0.998607	1.19367e-07	0	0	0.0214481	0	0.467199	1.05434	0.356533	0	0	1.3506	0.0031956	0.470107	59.3987	41.8008	0.286526	0	0.0605431	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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