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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004915 ID=TCONS_00004915|Name=TCONS_00004915|organism=Clytia hemisphaerica|type=transcript|length=3189bpRun BLAST on NCBI protein sequence of TCONS_00004915-protein >TCONS_00004915-protein ID=TCONS_00004915-protein|Name=TCONS_00004915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp MDIYNKKKTFIGKAAPLGYVAGLGRGASGFTTRSDIGPARDSSDAPDEAQRun BLAST on NCBI transcript from alignment at sc0000049:411038..430452- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004915 ID=TCONS_00004915|Name=TCONS_00004915|organism=Clytia hemisphaerica|type=transcript|length=19415bp|location=Sequence derived from alignment at sc0000049:411038..430452- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:411038..430452- >TCONS_00004915 ID=TCONS_00004915|Name=TCONS_00004915|organism=Clytia hemisphaerica|type=CDS|length=75087bp|location=Sequence derived from alignment at sc0000049:411038..430452- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004915 vs. Swiss-Prot (Human)
Match: PRP6 (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1) HSP 1 Score: 1265.37 bits (3273), Expect = 0.000e+0 Identity = 627/936 (66.99%), Postives = 757/936 (80.88%), Query Frame = 2
Query: 53 KKKTFIGKAAPLGYVAGLGRGASGFTTRSDIGPARDSSDAPDEAXXXXXXXXALKRKKDED-----NEDLNESNYDEFAGYGGSLFSSGPYEKDDEEADKVYDEIXXXXXXXXXXXXXXXXXXTVEKYRAERPKIQQQFSDLKRKLSDVSANEWATLPEVGDSRNKKMRNPRTERFTPVPDSVIKSALLAGQTSTSVNPME-QFGGLNTPYPG-------------MATPSTTDLDLNKIGEARKSLVGVKLDQASDSVSGQTVVDPKGYLTDLQSLTPSSSGDIGDIKKARLLLKSVITTNQKHAPGWIAAARLEEVTGHIQKARNFIMKGTEACPKNEDVWLEAVRLQPKELSKGVVAQAIKQLSQSVRLWIKAADLEDERAAQKRVFRKALENIPNSVRLWKAAVELEDPEDARILLTRAVECCPQSVELWLALAHLETYENGRRVLNKARENIPTDRQIWITAAKLEEANGNTPLVDKIIERGVTSLSSNGVEINRELWIVDAEEADKAGATYTAQAIIRTVIGIGVEDEDRKHTWIEDAESCAVHSAYECARAIYAYALKTFPNKKSIWLRASYFEKNHGTRESLETLLQSAVKHCPKAEVLWLMGAKSKWMAGDISAARNILSLAFQANPNSEEIWLAAVKLESENNEDERARQLLTKARMSAPTARVFMKSVRLEWVLGNLRQAKEMLKEALRKYDSFPKLWMMKGQLHEEEKDLYEATQAYRNGTKKCPTSIHLWILLAKLEEKQGNLTKARSVMEQARHRNPQTDELWLHSIRIEVRAKQLEFAKSLLAKAMQVCPSSGILWAESIFMVSRPQRKTKSVDALKKCEHDPNVLLAVSKLFWSERKVTKAREWFQRTVKIDPDFGDAWAYFYKFELQHGTEANQKSVLEKCTKSEPHHGAEWQVISKSTKNWRLKTKDILHQVARSLKS 2803
KKK F+G APLGYV GLGRGA+GFTTRSDIGPARD++D D+ + + K +EDLN++NYDEF GY GSLFSSGPYEKDDEEAD +Y +DKRMD++RKE RE++ KE +EKYR ERPKIQQQFSDLKRKL++V+ EW ++PEVGD+RNK+ RNPR E+ TPVPDS L G+ TSV+P + QFGGLNTPYPG + TP T +LD+ KIG+AR +L+ ++L Q SDSVSGQTVVDPKGYLTDL S+ P+ GDI DIKKARLLLKSV TN H P WIA+ARLEEVTG +Q ARN IMKGTE CPK+EDVWLEA RLQP + +K VVAQA++ L QSVR++I+AA+LE + A+KRV RKALE++PNSVRLWKAAVELE+PEDARI+L+RAVECCP SVELWLALA LETYEN R+VLNKARENIPTDR IWITAAKLEEANGNT +V+KII+R +TSL +NGVEINRE WI DAEE D+AG+ T QA++R VIGIG+E+EDRKHTW+EDA+SC H+A ECARAIYAYAL+ FP+KKS+WLRA+YFEKNHGTRESLE LLQ AV HCPKAEVLWLMGAKSKW+AGD+ AAR+IL+LAFQANPNSEEIWLAAVKLESEN+E ERAR+LL KAR SAPTARVFMKSV+LEWV N+R A+++ +EALR Y+ FPKLWMMKGQ+ E+++ + +A +AY G KKCP S LW+LL++LEEK G LT+AR+++E++R +NP+ LWL S+R+E RA A +L+AKA+Q CP+SGILW+E+IF+ +RPQR+TKSVDALKKCEHDP+VLLAV+KLFWS+RK+TKAREWF RTVKID D GDAWA+FYKFELQHGTE Q+ V ++C +EP HG W +SK NW+ K DIL VA +K+
Sbjct: 4 KKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSKDIANWQKKIGDILRLVAGRIKN 939 The following BLAST results are available for this feature:
BLAST of TCONS_00004915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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