TCONS_00004941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004941
Unique NameTCONS_00004941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004941 ID=TCONS_00004941|Name=TCONS_00004941|organism=Clytia hemisphaerica|type=transcript|length=2494bp
TTTAAAACTGTAGAGAaacgtttttgattttttgaaagttacTTTGATTT
TAGAACTACACAGCGTTATTGGTCAACGAACACGAACCGTCTGATTTCTA
TATAACAGATCCTCGATTACCTCCGCCGAAAAGCCCGATACGATTCGAAT
TTGATCGACATTCATCGTATCGAACGAAACGAATGGAGAATCCAGCGTAC
CGCAAAGACAGTCCTGATGTTGATGAGCGGAACATCCAAGTCAAGGAAAC
CGTCCTTCCGCCTTCCCACCACAAGAAAAGTGTTGTTTCTTCTGAGAATG
GATCTTCTGCGTCGTTCAACAACCCTCACTACCGCTATGGTTGGAGCAAA
CTGACACCCAAACTCTTACAATTTATGAACAAACCTGTANCAACCCTCAC
TACCGCTATGGTTGGAGCAAACTGACACCTAAACTCTTACAATTCATGAA
CAAACCTGTAtggtttttagtttttctttgtGTGGCAGGTGTAGCGCAAG
GACTTGTTGTCACCGGTGTTGCGTTTACTATATTGACCTCTATTGAGAAA
CAATTCGGCTTTTCAAGTTCACACGTGGCGCTATTTGGAACCGTCTACGA
TACGGCGTACGGTATATTTTGCGTTTTCATTGGTTATGTTGGTCATCGCC
ACAAACCACGTTTCCTTGGTTACGGATTAATCATAATGGCGTGTGGAGCT
GTGTTGACTTCCGTACCGAAATACATTATTGGGACTTATGACGTAGGTAC
TGAACGCGACACGGACTTCTGTCGGTTTTCAGTGACGTCGACACATACAC
CGATTTGCGGTGGCTCCGCGGAGTGGTATTACACCTTAATTTTTCTTGCT
GGTAACGCAATGATTGGCATCGGAGCAACTCCGTTATACGTTTTGGGACC
ATCACATTTGGACGAAATCACCCACCGTGGACAGAATGCTTTATATACGG
GCATCTTTTACGCATGCGCAGCTCTGGGACCAGCCCTAGGTTTCATCATT
GGTCTTCCTATCTTGAACACATGGGTGGATCTGGAACAGCCGGCGAACTC
AAACTTGACACCTGAAGATAGGAATTGGGTTGGTGCTTGGtggattggtt
accttgttggtGCTGTCATCATGCTTCTCCCTGCTGCTCCAATGCTGGGA
TTCCCAAAACTCTTCCCCAACGCTGAGAAAGTCAAACAAGCAAAAAGTGA
ACTTGAAGACACAATTGAAGAAGACAAGAACTTGAATCACAATTTCAAGT
CTGTTTGGCCTGCAACGAAATCGCTGCTCAAAAATATTCCATTTGTGTGT
ATCTGTCTGGCGAGTGCAACCGAGAGTTTAGCCATTGGTGgattttcaac
tttcttttcaaagtttgTTGAAACACAATTTCACGTGACTTCGGGATCTT
CATCGCTTTATTCAGGTGTCATTATCATACCTGGTGCTGCTGGTGGTATG
TTTTTGGGCGGATTTCTCATCAATCGTTACAAATGGAATTGTAAACAAAT
CCTTCGGGCGGCTAGCATGATGGCGTTTGTTGCAGCAGTATGTGTGGCGT
CCACCCTGATAGGTTGTAAAGGGCGTGAAGTGGTGGGTGGTGACCTACCC
TATGCTAATTCGTCAACGATATCTTTACAATCAGGGTGCAATGAATATTG
TCAATGTTCCATAAGATATTATAAACCAGTTTGTTCAGTGGTCGACCAAC
AGACATATTTTTCACCTTGCCACGCTGGATGCTCTAATAATCACACTGTC
ACCATTGACggagaaaagcattttcagAACTGCTCATGCGTCGCCAGTCT
GGTGAAGGATGGAAGATGTACTCCTGAATGCAATTTGTTTCCATTGTTTT
TCGTTTGTGCATTTCTGATGATGTTCTTCACCTTCATGAATAATGTACCG
ATGTTGATGGCTACACTGAGGGTTGTTCCAGAAGGCCAAGGTTCGTTTGC
CATGGGTTTCCAACAAATTTTCGTTCGTTTCCTTGGCTTCATACCTGCTC
CAACAATGTTCGGACGATTGATCGATGAAAGTTGTAAATTATGGCATAAA
GACGAATGTACGGGTGAAACGACGAGCTGTTTAGAATACAAAAACGAAAA
CTTCAGATACTATATATTCTTACTTGGTGTTATTACCAAGtttctttcat
ttgtttttatatttgcTGCATACAAAACTTACAAACTGCCGCAAGGGGTT
TCAAAATCAGCAGATAGCAGTAATAGCAGTAGTTATGATATGAAAAACTT
TGCTGAAAGTTCTTGTGAAGAAACTTCGATGGAAAGTTTGGATCAGGAAA
AAGGAAGCAAGATCACACCTGTCAATGTGGTGGTCAGTGGTAATGGTGAT
AATCTATGATGACTGGTGATATATGTTGGTTGTCGAACTCGattcttttg
ttgttttctacATACTCTTTAGTTTGAATTGTTCTTTGAGGTGACATTTG
CAGTGGTGTGGCACTTACAAAGTCCTGCTAAAATCTGATTATTT
Run BLAST on NCBI

transcript from alignment at sc0000049:743000..753412-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004941 ID=TCONS_00004941|Name=TCONS_00004941|organism=Clytia hemisphaerica|type=transcript|length=10413bp|location=Sequence derived from alignment at sc0000049:743000..753412- (Clytia hemisphaerica)
TTTAAAACTGTAGAGAAACGTTTTTGATTTTTTGAAAGTTACTTTGATTT
TAGGTAAGTAAAAAAAGTTTTGACCTTTTTCATTTCTGACTGCACGATGT
CAAGTAATTGCTAACAACCTTTTACACGTCTTGAGAGCAGGCATGGGGCG
GTTCCCCTAAAGAAGAATAGTAGAGAGGAAAAAAACGTCAAATAAAATGT
GAAGGTTTTGTTGTGACCTTTTGCCTTGCTAACTTGTAAGACCACTTGTT
AAACCTCCTTATAACCCAAGGTAATACCCAATGGTAGCAGTTCTGTTAAA
GGAAAAAAATCGGGACTCTTTTTAAGCCTTAAAGGACTGAAAGTTTTGTG
ATTTCATCGACCCTGAGCGTGATTTTAAAGGATCAGGAACATTTAGGGCG
TGGCGAAAGGTTCTGTTTTCCTTAAAGCAATTTCCAGGGGCCGCGGCTCC
CTTTTGAAAGTGATAGGGCCACAATAAGTTGGCTAAGGAGGCGCCACCAT
GGTTGGCTTTGAATTTTAGCATTTCTAGATCCTCTAAAACAGGTCTGTTT
TAAGATTATTAAACTGAATTTGGCTTGATTAGTAAATTTTTCTTTTTTGC
TTTGAAAAAATGTGTTCGGGCATTTGATTTCAGATTACCCCTACAAGTTT
ACCATTGACCTGGTGCTGAAAAAGTAATGGGGATGAGAAAAAATGTTATT
GTTTATTTTCTGCTCCAAAGTTTTTTTTTATTTTTAAAATCGTTCTTTTC
ATATCTTGCTGTAGTCTAGCAAGCTAGACGACTAATTCAGACATAAATTA
GAAATAAAGCAAAAAAGTAAATTTTAGTCGTCTAGGAACCTTTGTGCACT
AACTCCAAACAAAATGAAAGTGTCAATATCGCAATTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGCTGGAACACCGGATTCTTCCAGTCGTTTATACAAACTAAA
TCCCGTATCATTATTTGTGTTTATTATTAGTATTACATGCATTATAAACG
ACTCCAGTCTAATCTTGCTGCCTTTCTTTGATTTAGCAGCTAACTGATAA
GTACGAGTTCAGACGCGGCTTGAAAACCTCCCGAAATGGGACAAGTATAT
TCTTTTAAATTGATATTTGACTCGCTCACTAAATGTAAGGTGAGACGATA
CGTTTAACAATAGTTGGCCTTTTTATCAATCGAACATAAAAGTAAATCAG
GGATTTTTATAAGTCATCCCGTGAAATCTCAATATTTATCCAAGCAAACA
TCATATTTAGTGGGCACATAACATCATATTCTCTGTGTGCGATACAGCAA
CATAGGCCCTTTTTAGTCGAAAGAGAAGGTGTTTTCATAGGTGAGTTGAC
TTTCAAGAATTTTTCGTTGGTCAGAGTACTTTCTTTTATTAAATGCATTT
AAGACAAAAAAGTCTTACAATAAATAATACTTTTGTGAAATATTGTGTGT
TACCATAGTATAAGAAAATCGCGGCTTTCTTATACTATGGTGTTGCGTAA
AAGGGGTAGCTCTTAGCGTAAAATGGGCAAGCTTTCAGGGGTCTGAGTTT
TAATGTGATCGAACCTCTTGTAAAAAACATCGGCAATTTTCGTGATAAAG
ATACCCTAGGAAAACTTATTTGCAAATTACTTGAATTCTGCTTTTTCCTT
ATATAGAGAGACGTTTCGAGTTTGAAACTTGATGTTTATACGTTATTTTG
TCAGAATGTCAAAAAACTTTGAGAATTGCGTCGTTTACATAGAATCTTCA
AAGCCGGTTCAGTAAATTCTTATGTTGTATGCACCCCCTCTGATATATTT
TGTTATAGAGGATGCGTATAGTGTATAAAACTCCCGTCCGAGAATTACAC
CCGTCTCAGCGTTTCTTTGAGATTTAGAAACTTGATTAGCTTGAAAAAAA
AAACGTGTATACAAAAACGCGTACAACCAAAGTTTTTGAAGCCTTCGGAT
GTTCTTAATTTTTTGAGTTTTAAGCCTAACATTCACCTAAGAAACCGGGT
GTTATATAGTCTATTATAAGCCATGAAATATTCTTAACTTGTTCTTAATA
TTTTGACCATCGAAGCCTTATGTTCTTATATANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAACAAGTTGGTCAA
ATTTAAAAAGTGATAGCTCAAATTTTAAGTTAGGATATCTACTTTCTAAA
TATCAAAACTCCAAGCACTTTGGGACATTTGTACGGCCTCAAGACGTCGG
GAAACGTCTGAACTTTTTCGTGGGTCACCCGGTAGTTTGTTCTTATAAAA
AGACGTGTAGTTGGGAATTGAGTAAAAAATGTCATGTCTGCAACATCGAT
TCCCAATCGATTCATAACTTTCGTTCCGCTTGTTGCTATGACAACTTCAT
TTTTCATTGAAATAGAAATTTCTATAATTTATTGAAATAGTTTTTAAATG
TTTATGTGAAAAAGAAGTCAAAATACGAAAGGTTGTCTGAAAAGATATAG
AGGAGGGAAAACGTGAAGGATTTATTTATCGATGATGTTTGATCAGGAAT
ATTGATTTTGTTGAGTTATTTGATGGCCAAATTTTTCGATGAGGTTGTTA
AATTTGAAGAAAATGGACATTTCTATTGAAGAAGTTAAAGTTGTTTAGTG
AAAGTTGAATTTTGTTTTGGTCGTGAAATGGGTTGCACCATAAAAAATAA
GTAAGTTTCTAATGCGTGGATTTTTACCCTTATTTACCAAATCCTTCTGT
TGAATCTCAAATGTGAGAATTAGTTCCTTGTACAAGCCATTTAAAGTTAT
TTCGGAGTCGGAACTCTTCTGCTCTATGATATTTTCACTTAGCTAATTGG
AGTAGCTTTTTATTTCTTTATTTCAAATCCATATTCCATTGGAAGCCAAA
CTTTCAAGATTCTTATCGCTCTCCATTTCTTTCGGCTCAATTAGTCACGC
TAACACAGCAAAGATAACGACACAGTCACGCAGTGAAGTTCGCTTCTTTG
ATCCTATTCCCTGTCCTAATTCGGTAAAAAAACTGACGGAAAAGGGAAAA
TTTTATCAAAAGTTTAGTTGCTTTGAAAAGCTTCGTGGGAGGTCTTATTT
GGCTAATTTGGAAAGCCTGTAATAGTACTTTTGTTGTTCAAAAAGATAAA
GCAAGTTTTTCACAATGAAATTTACCCGAAGATAAGAAAGGAAAAAGGCC
AGCATAGCGCGAGCAAGAAAAAGACTAAAAGAAAAGTAAATGGAAAAAAT
GAATTATTTAGGAAACCAAGCTCTAAAACTTTCACGAAAACAAAATAAGT
CTTAAACCTCTGATGTGTTGGGAGGCTCAACCTAAAGAGGGTTTGGGCAC
GAAATGTTTGCATCCTGTTTACGCATGGGAAATATAGTATTTTTACGGTG
AAAGAAAAAGAAAAGCAAAAACAAAATTGACGGGCAGTGATTATTTATCC
ATTTGAAATCCTTGAAGGAAGGCTCGATCGGATTGTACTGTTAAATTACT
AGTCGAGACTTTTTAAAGATTTTCGGATAATTTTTGGAAATTGTATAATA
TTTTGAATACAAGATGTCTTCTTTAGACACTGAAGAATATGAGGTAAGAT
TAGACAATGACACAGGGGTATCATCTTAATGAAAATGATATAGGGGTGTC
ATCTTAATGAAAATGATATAGGGGTGTCATCTTAATGAAAATGACACAGG
GATGCCATCTTAATGAAAATGACACAGGGATGCCATCTTAATGAAAATGA
CACAGGGATGTCTTTAATGAAAATGATACAGGGGTGTCATCTTACTGAAA
ATGATATAGGGGTGTCATCTTAATGAAAATGACACAGGGATGCCATCTTA
ATGAAAATGATACAGGGGTGTCTTTAATGAAAATGACACGGGGATGTCAT
ATTGAAAATGACACAGGAATGTCATATTGAATATGATACAGGGATGACAC
TTTATTATGTAGTTTGTTGGATGTAAGGACTGACCCTGGAGTATATTACT
TTTGATTAGATCTTTAAAGCCTTCACCCAATCTTTGACCCATAAGACAGT
GCTCTGTAGACTTCAGAGTTGCGAAATCAGTAAGAAAAGATGTACAGCAC
AAGCTCTTCTGTTTACGTCTAACCTCCATGATGGAATTCCGTCCTTTCGT
AGAAGTGTTAAATACAACATCCGAACATCAGAAAGAGAGACGAAGCTGCC
ACTTTCTTTCGTTCTGTATTTTACATCTCTTTTTATCAGCATGATGACAG
TTATAAAACTTGTGACACAAAAGCATTAGTATGTGATTAAAAATGACGAA
TTAATTAATCTCCCTTTTCTTTTTAATACCACATACTTCGAGCAATGTAT
TACCGCTCACATAGTATAACACGGTCTTGCTGCTTTGCTGTTTGAATTTA
CCACGGAGTTTACAACGTTATTACAAATGTTATCATTTTCTTATTCTAGT
CTTGGTTTATACAGAGAAAGATTTTAGCATTTTTTTTTTTGTTTTTGATT
CGTTTGGCACAAATTTACCACAGGATTGCGGAATTCGAATGATTTGTGCT
TTAAGATTCTTTTTGATAATAAAGTGCTTATTTCTTATGTAAAACCCTTT
CATTTATTAAAACTTACATCAAAAACTTCCTTTATCAGTTTTTTTTTTGT
CATGTATGGCTCGTACGATTGATAATTCATTTGTATGGGAGTGTTATATT
GATGGGGTGACAGTTGAAACTAAATTTGCATATTGGGATTGGAAGTAGAG
TTTTTATTCACAAATGTTTTGAACTTAATAGCTAGAAATATCCAAGCAAG
TTTGTAAGCTAGTGTAATGACCATTCATGATTAGATGACTGTTCTTTCAG
TAAGAGTGCTACTGTTAAGGGAATGCTTTACAAGTTAAAATTGAACACTC
CTTAAAAATCTTCAAGAGGTTTTGTTAATTTAATATCGATGCATTGCTAT
ATTCCCAAACTTTCTATAAACCTTGTTTCTCTTCTGTTTTTGCAGAACTA
CACAGCGTTATTGGTCAACGAACACGAACCGTCTGATTTCTATATAACAG
ATCCTCGATTACCTCCGCCGAAAAGCCCGATACGATTCGAATTTGATCGA
CATTCATCGTATCGAACGAAACGAATGGAGAATCCAGCGTACCGCAAAGA
CAGTCCTGATGTTGATGAGCGGAACATCCAAGTCAAGGAAACCGTCCTTC
CGCCTTCCCACCACAAGAAAAGTGTTGTTTCTTCTGAGAATGGATCTTCT
GCGTCGTTCAACAACCCTCACTACCGCTATGGTTGGAGCAAACTGACACC
CAAACTCTTACAATTTATGAACAAACCTGTANCAACCCTCACTACCGCTA
TGGTTGGAGCAAACTGACACCTAAACTCTTACAATTCATGAACAAACCTG
TATGGTTTTTAGTTTTTCTTTGTGTGGCAGGTGTAGCGCAAGGACTTGTT
GTCACCGGTGTTGCGTTTACTATATTGACCTCTATTGAGAAACAATTCGG
CTTTTCAAGTTCACACGTGGCGCTATTTGGAACCGTCTACGATACGGCGT
ACGGTATATTTTGCGTTTTCATTGGTTATGTTGGTCATCGCCACAAACCA
CGTTTCCTTGGTTACGGATTAATCATAATGGCGTGTGGAGCTGTGTTGAC
TTCCGTACCGAAATACATTATTGGGACTTATGACGTAGGTACTGAACGCG
ACACGGACTTCTGTCGGTTTTCAGTGACGTCGACACATACACCGATTTGC
GGCGGCTCCGCGGAGTGGTATTACACCTTAATTTTTCTTGCNACACATAC
ACCGATTTGCGGTGGCTCCGCGGAGTGGTATTACACCTTAATTTTTCTTG
CTGGTAACGCAATGATTGGCATCGGAGCAACTCCGTTATACGTTTTGGGA
CCATCACATTTGGACGAAATCACCCACCGTGGACAGAATGCTTTATATAC
GGGCATCTTTTACGCATGCGCAGCTCTGGGACCAGCCCTAGGTTTCATCA
TTGGTCTTCCTATCTTGAACACATGGGTGGATCTGGAACAGGTAAAAATC
TTTCTCTATTGATCTCTGTAATATTAAGTGGTTTCACATCGTCAATGTCA
GTTTAAACCTTTACGATGTAATTAAGATTTTTGAAAGCATGTGATAAAAC
TTTATTTGAATTGCTGCTCATATCCTTTGTGGGAAAGTGAATCTAACAAT
TTTAAGTTATANTGAATTGCCGCTCCTATCCTTTGTGGGAAAGTGAATCT
AACAATTTTAAATTATAAAAAATGCTAACATGAATTAACTTCATAATTTA
GCCGGCGAACTCAAACTTGACACCTGAAGATAGGAATTGGGTTGGTGCTT
GGTGGATTGGTTACCTTGTTGGTGCTGTCATCATGCTTCTCCCTGCTGCT
CCAATGCTGGGATTCCCAAAACTCTTCCCCAACGCTGAGAAAGTCAAACA
AGCAAAAAGTGAACTTGAAGACACAATTGAAGAAGACAAGAACTTGAATC
ACAATTTCAAGTCTGTTTGGCCTGCAACGAAATCGCTGCTCAAAAATATT
CCATTTGTGTGTATCTGTCTGGCGAGTGCAACCGAGAGTTTAGCCATTGG
TGGATTTTCAACTTTCTTTTCAAAGTTTGTTGAAACACAATTTCACGTGA
CTTCGGGATCTTCATCGCTTTATTCAGGTGTCATTATCATACCTGGTAAG
AACATTGTTCTACTTTTTCAACTGAAGACTAGATTCTGACCATGCTTGAT
CCATAACTTCCATAATTTGACTACAACCTCTAACTTCTTTTCAATCACAC
TAATTTTTCGCATTTCGTTTGTTTTAGAGTTGTGACATGTGACTTGGCGA
GATTTCAATTTGTAGATTATAAATTCGTTCTCTTTTACTACTTAATTTTC
GTATATTCTATGCGTTTCCTTTCTATACGTAACCCATTTTCATCTATGCT
CAGGTGCTGCTGGTGGTATGTTTTTGGGCGGATTTCTCATCAATCGTTAC
AAATGGAATTGTAAACAAATCCTTCGGGCGGCTAGCATGATGGCGTTTGT
TGCAGCAGTATGTGTGGCGTCCACCCTGATAGGTTGTAAAGGGCGTGAAG
TGGTGGGTGGTGACCTACCCTATGCTAATTCGTAAGTGGAACAGATTTAT
TTATTGTTCATCGTTCAGTGAGAAATTTCTCAGATAGTAAATCCAAAGTC
TAGAATAAATCGTTGTCGTTTCCTTATTGATTAAAGTTACACCAATGTAA
ATATCTGTCAGCTTTGATAAAAATGACATGGGTCTTCTGTTCATATTTTC
AGGTCAACGATATCTTTACAATCAGGGTGCAATGAATATTGTCAATGTTC
CATAAGATATTATAAACCAGTTTGTTCAGTGGTCGACCAACAGACATATT
TTTCACCTTGCCACGCTGGATGCTCTAATAATCACACTGTCACCATTGAC
GGAGAAAAGGTAAAAATGGTTCATCCCATCTTTTCTGGCAGCCTTCTCAC
AGACAAAGTTTGTCTATACAAGTTTCTTAATTCCTAAATTTTATAACCAA
TGTCTTGCATTGGTTTAGGTATCTTAATCAAATAAGTGAAAAGAAACTAC
CGAAAAAGTTATTAAGATTATTCCAAGAAATGTATACACATTTTCTTTCA
TTTCCAGCATTTTCAGAACTGCTCATGCGTCGCCAGTCTGGTGAAGGATG
GAAGATGTACTCCTGAATGCAATTTGTTTCCATTGTTTTTCGTTTGTGCA
TTTCTGATGATGTTCTTCACCTTCATGAATAATGTACCGATGTTGATGGC
TACACTGAGGTAAGCGCTTTGAAATATGCGTATCCATGATATATTCATCA
TAAAGTCTTGGTTTCAGTGAAAGAAATACTAGTAGTCGATTTGCCAAAAT
ATAGTTGCAAAGGTACTTAAAATAACATCAGAAGCGAGAAAGGCTTGTGC
CAATTTGGCCTGATATTTAAAAATCTGTATAACATGTATAACTCTATTAT
TAATCCTATCAGGTCAAATTTAAGGAGCTCTTTTTTGAACAGAACCTCTG
TTTGACTGTTTTATATCAATTTCTCTGTTTTCATTGCAGGGTTGTTCCAG
AAGGCCAAGGTTCGTTTGCCATGGGTTTCCAACAAATTTTCGTTCGTTTC
CTTGGCTTCATACCTGCTCCAACAATGTTCGGACGATTGATCGATGAAAG
TTGTAAATTATGGCATAAAGACGAATGTACGGGTGAAACGACGAGCTGTT
TAGAATACAAAAACGAAAACTTCAGATACTATATATTCTTACTTGGTGTT
ATTACCAAGTTTCTTTCATTTGTTTTTATATTTGCTGCATACAAAACTTA
CAAACTGCCGCAAGGGGTTTCAAAATCAGCAGATAGCAGTAATAGCAGTA
GTTATGATATGAAAAACTTTGCTGAAAGTTCTTGTGAAGAAACTTCGATG
GAAAGTTTGGATCAGGAAAAAGGAAGCAAGATCACACCTGTCAATGTGGT
GGTCAGTGGTAATGGTGATAATCTATGATGACTGGTGATATATGTTGGTT
GTCGAACTCGATTCTTTTGTTGTTTTCTACATACTCTTTAGTTTGAATTG
TTCTTTGAGGTGACATTTGCAGTGGTGTGGCACTTACAAAGTCCTGCTAA
AATCTGATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002791XLOC_002791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004941-exon-sc0000049-1575043694:753360..753412TCONS_00004941-exon-sc0000049-1575043694:753360..753412Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:745927..746667TCONS_00004941-exon-sc0000049-1575043694:745927..746667Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:745622..745866TCONS_00004941-exon-sc0000049-1575043694:745622..745866Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:744968..745361TCONS_00004941-exon-sc0000049-1575043694:744968..745361Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:744532..744709TCONS_00004941-exon-sc0000049-1575043694:744532..744709Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:744204..744360TCONS_00004941-exon-sc0000049-1575043694:744204..744360Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:743854..744005TCONS_00004941-exon-sc0000049-1575043694:743854..744005Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1575043694:743000..743573TCONS_00004941-exon-sc0000049-1575043694:743000..743573Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:753360..753412TCONS_00004941-exon-sc0000049-1510915933:753360..753412Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:745927..746667TCONS_00004941-exon-sc0000049-1510915933:745927..746667Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:745622..745866TCONS_00004941-exon-sc0000049-1510915933:745622..745866Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:744968..745361TCONS_00004941-exon-sc0000049-1510915933:744968..745361Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:744532..744709TCONS_00004941-exon-sc0000049-1510915933:744532..744709Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:744204..744360TCONS_00004941-exon-sc0000049-1510915933:744204..744360Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:743854..744005TCONS_00004941-exon-sc0000049-1510915933:743854..744005Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1510915933:743000..743573TCONS_00004941-exon-sc0000049-1510915933:743000..743573Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:753360..753412TCONS_00004941-exon-sc0000049-1491911889:753360..753412Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:745927..746667TCONS_00004941-exon-sc0000049-1491911889:745927..746667Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:745622..745866TCONS_00004941-exon-sc0000049-1491911889:745622..745866Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:744968..745361TCONS_00004941-exon-sc0000049-1491911889:744968..745361Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:744532..744709TCONS_00004941-exon-sc0000049-1491911889:744532..744709Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:744204..744360TCONS_00004941-exon-sc0000049-1491911889:744204..744360Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:743854..744005TCONS_00004941-exon-sc0000049-1491911889:743854..744005Clytia hemisphaericaexon
TCONS_00004941-exon-sc0000049-1491911889:743000..743573TCONS_00004941-exon-sc0000049-1491911889:743000..743573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:743000..753412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40493	4.40301	1.08698	1.23496	1.5478	1.87589	3.44121e-06	0.218358	3.85492	4.44313	3.15905	2.56995	17.4928	16.566	5.44527	7.82187	11.7694	14.4942	11.3526	12.9917	6.34537	7.4592	2.63735	3.04923	1.55239	0.00625943	4.70201	6.59645	2.60097	1.50904
Blast
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BLAST of TCONS_00004941 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 5.395e-107
Identity = 224/656 (34.15%), Postives = 342/656 (52.13%), Query Frame = 2 
Query:  317 QQPSLPLWLEQTDTQTLTIYEQTCXNPHYRYGWSKLTPKLLQFMNKPVWFLVFLCVAGVAQGLVVTGVAFTILTSIEKQFGFSSSHVALFGTVYDTAYGIFCVFIGYVGHR-HKPRFLGYGLIIMACGAVLTSVPKYIIGTYDVGTERDTDFCRFSVTSTHTPICGGSAEWY--YTLIFLAGNAMIGIGATPLYVLGPSHLDEITHRGQNALYTGIFYACAALGPALGFIIGLPILNTWVDLEQPANSNLTPEDRNWVGAWWIGYLVGAVIMLLPAAPMLGFPKLFPNAEKVKQAKS----ELEDTIEEDKNLNHNFK--------SVWPATKSLLKNIPFVCICLASATESLAIGGFSTFFSKFVETQFHVTSGSSSLYSGVIIIPXXXXXXXXXXXXINRYKWNCKQILRAASMMAFVAAVCVASTLIG-------CKGREVVGGDLPYANS----STISLQSGCNEYCQCSIRYYKPVCSVVDQQTYFSPCHAGCSNNHTVTIDGEKHFQNCSCVASLVKDG-------RCTPECNLFPLFFVCAFLMMFFTFMNNVPMLMATLRVVPEGQGSFAMGFQQIFVRFLGFIPAPTMFGRLIDESCKLWHKDECTGETTSCLEYKNENFRYYIFLLGVITKFLSFVFIFAAYKTYK 2185
            +QP   LW E+   +                GW    P  LQ +N P   L FLC A   QG+ V G   T++TS+E+++   S    L  + YD A  +   F+ Y G   HKPR+LG+G+++M  G+++ ++P +  G Y+V  +     C     +    +C  S      Y L+F+ G  + G+GATPLY LG ++LDE      + +Y  IFY  A LGPA G++IG  +LN + ++ +   + LT E   WVGAWW+G+L         A P+LG+P+  P +++    ++    +L+D+   + + N +F         S+W     LLKN  F+ +CLA ATE+  I G STF  KF+E+QF +++  ++   G +++P   GG FLGGF +N+ +      LR ++++ F    C   +L+G       C    + G    Y  S      ++L + CN  C C   +Y PVC   D   YFS CHAGC       +DG+K +++CSC+   +  G       +CT  C   PL  V  F+++FFTF++++P L ATLR V + Q SFA+G Q I VR LG IP P  FG +ID++C LW +D+C G+  SCL Y+N     YI ++G++ K L  +F   A   YK
Sbjct:   56 KQPLCQLWAEKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTC----PANPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGR--RTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEAS-NPDFGKTIRDLPLSIW----LLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLR------LRGSAVIKFCL-FCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGS-DGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYK 690
The following BLAST results are available for this feature:
BLAST of TCONS_00004941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4A15.395e-10734.15Solute carrier organic anion transporter family me... [more]
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