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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004949 ID=TCONS_00004949|Name=TCONS_00004949|organism=Clytia hemisphaerica|type=transcript|length=2002bp
CAGGCATtgtaaaaataagcaaaacaaaaaataaaggaAGAGTCTATACT
GCAAACTCGAGTACGAACTGATACTATCCCGTGACAATCatcatattatc
atataacacccatattactgtagTACAatgattataaacgactccagttt
tggccagtttttcagaaaatcaaaccGTTAAAGAACGAACGCATCACCGA
GGAAAATATGCActcagaaaaaattatttttgataattgtACTTCTTAGA
ATTTTGAACTACTCTCTCTATTATTCCATTATTTTAATAATCTTTCTGTA
ACATAAGATATTGGTCCCTTTAGCTAAAAAGTGGTATAAATTACTTTCTG
TCATTGGAATCTTTCTCTTAtccgaagaaaatttttggtcctatgaagat
cgaattagagagagtcagcTGTACTCATTCATCAAGTTATTCTTGTTTTT
TGATTTCACCACATTTAGTCTTTTGGAGGTATAGGTCTTAACATGTGCCA
TACCAACCAAGGTTTATTAGGACCATCCATCATGTTTTTCCATTGCACAG
CTCCCAAATCTGTATTCCCAAGCTGTCCAATAACACATTGTCCGATAGGT
TCACCAGGTTCACCCTTATCATAATCAGCTACACAGAAAAGTAGAGAAAG
TTCATCCAAATCATCATAACTTGCTTCGAAAGCAAAACTAGCATTAAATG
TCGGGTTCAAAGTCATTGTTTTGAATGTTGTTTTACGTTTCTTGATTTTC
TTCCCGTCACGGATCAAGAAGAAAGTGACGTACGGGTCTGAGAAGCCGCT
GTCATCAACTGCCGCTAAATTTTTACAACTCAAGATAAATACCGCTAAAA
CACTTGAATTAGGTGCGTAGCCAAGCCCAATACAAATATGTCCTAGCTTT
GTATCTTTCCACGGTACTTTAGCCTCTGATTTGAACTCTGGTGCTAATAC
TTGTACCTTGGTCACCTTCCCTTTACTCATGTCGAGATCTTTAATGGAAA
CAATAGCTTCACCGAGCAAATCGTCTTTACCAAAATCATCATGCATCACT
CGAAAGATCAAATCACTCATTTTAAAACcattataaattattttcttgaa
attaaatgtttcttcaaattttgggTGATGGTTATTATTCTTGACTTTGG
TTTTATAGGATTTCTTAGCAGCCGGTTTTAGTTTAACTTCAACATACGGA
TCCGGAGCTTCTTCATCTTCGGGCTCCGGCGGTAAATCTTTACATTCGTG
CACCGTAACAATGGCTATACTTTCCTCCTGATCAAAATCAACAGTATATC
GAATCTGTGCAAGTTTGATTTCGGACAAAGCGTCAAACTGTGTTGCTTCT
ATGTTATAATCCATTTCATCGACACGTTGAAAAGTCCGCTCTCGATAATT
tggtccaaataaatggtttttaCGTAGATCTAACTTTCCTGGAACTTCAG
CTTTCTCCTCTTTCGGGCGACAGAATCGGCAGCATATACAACACGTGACC
AgccaaataaaaacaataacacctGCTGTGATACCGAGCGTTTGTTCGGG
AGGAATGGGGAGACTTTCtaagaaattccaaaatgttgtATATGCAAGTT
TGATGTAATGAACGACCTTTTCTAAGATTTCATTCCAATCAATATTACTC
ATTTTCTCATTTGCTGTTGTGGTTTTCTCCTCAATCAATATTATTTATTG
AtgatttttgtttaaattctctaaataatcaaaaacatgaaatttcgaAG
GGATGGGTATTCAGTATTGACCAAAATCTCAAACATTGAAATCTTAGAAG
ACAAGcttcattcaaaaatattttagtccTTTACCCCTCCATTCCTAGAC
TGAAGTTTTCTTTCTGATGACGATGAGTCCAGTTAAGTAGACTAAAAGCA
CTTGACGAGggttgccattttgaaagaaaatcacTAGAAATCCACTAAAA
ATATATACCGGATCACATAACCGAGGAaaccagtctataaaaaaacttta
ag Run BLAST on NCBI protein sequence of TCONS_00004949-protein >TCONS_00004949-protein ID=TCONS_00004949-protein|Name=TCONS_00004949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MSNIDWNEILEKVVHYIKLAYTTFWNFLESLPIPPEQTLGITAGVIVFIW
LVTCCICCRFCRPKEEKAEVPGKLDLRKNHLFGPNYRERTFQRVDEMDYN
IEATQFDALSEIKLAQIRYTVDFDQEESIAIVTVHECKDLPPEPEDEEAP
DPYVEVKLKPAAKKSYKTKVKNNNHHPKFEETFNFKKIIYNGFKMSDLIF
RVMHDDFGKDDLLGEAIVSIKDLDMSKGKVTKVQVLAPEFKSEAKVPWKD
TKLGHICIGLGYAPNSSVLAVFILSCKNLAAVDDSGFSDPYVTFFLIRDG
KKIKKRKTTFKTMTLNPTFNASFAFEASYDDLDELSLLFCVADYDKGEPG
EPIGQCVIGQLGNTDLGAVQWKNMMDGPNKPWLVWHMLRPIPPKD Run BLAST on NCBI transcript from alignment at sc0000049:65199..67200 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004949 ID=TCONS_00004949|Name=TCONS_00004949|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at sc0000049:65199..67200 (Clytia hemisphaerica)
cttaaagtttttttatagactggttTCCTCGGTTATGTGATCCGGTATAT
ATTTTTAGTGGATTTCTAgtgattttctttcaaaatggcaaccCTCGTCA
AGTGCTTTTAGTCTACTTAACTGGACTCATCGTCATCAGAAAGAAAACTT
CAGTCTAGGAATGGAGGGGTAAAggactaaaatatttttgaatgaagCTT
GTCTTCTAAGATTTCAATGTTTGAGATTTTGGTCAATACTGAATACCCAT
CCCTtcgaaatttcatgtttttgattatttagagaatttaaacaaaaatc
aTCAATAAATAATATTGATTGAGGAGAAAACCACAACAGCAAATGAGAAA
ATGAGTAATATTGATTGGAATGAAATCTTAGAAAAGGTCGTTCATTACAT
CAAACTTGCATATacaacattttggaatttcttaGAAAGTCTCCCCATTC
CTCCCGAACAAACGCTCGGTATCACAGCaggtgttattgtttttatttgg
cTGGTCACGTGTTGTATATGCTGCCGATTCTGTCGCCCGAAAGAGGAGAA
AGCTGAAGTTCCAGGAAAGTTAGATCTACGtaaaaaccatttatttggac
caAATTATCGAGAGCGGACTTTTCAACGTGTCGATGAAATGGATTATAAC
ATAGAAGCAACACAGTTTGACGCTTTGTCCGAAATCAAACTTGCACAGAT
TCGATATACTGTTGATTTTGATCAGGAGGAAAGTATAGCCATTGTTACGG
TGCACGAATGTAAAGATTTACCGCCGGAGCCCGAAGATGAAGAAGCTCCG
GATCCGTATGTTGAAGTTAAACTAAAACCGGCTGCTAAGAAATCCTATAA
AACCAAAGTCAAGAATAATAACCATCAcccaaaatttgaagaaacattta
atttcaagaaaataatttataatgGTTTTAAAATGAGTGATTTGATCTTT
CGAGTGATGCATGATGATTTTGGTAAAGACGATTTGCTCGGTGAAGCTAT
TGTTTCCATTAAAGATCTCGACATGAGTAAAGGGAAGGTGACCAAGGTAC
AAGTATTAGCACCAGAGTTCAAATCAGAGGCTAAAGTACCGTGGAAAGAT
ACAAAGCTAGGACATATTTGTATTGGGCTTGGCTACGCACCTAATTCAAG
TGTTTTAGCGGTATTTATCTTGAGTTGTAAAAATTTAGCGGCAGTTGATG
ACAGCGGCTTCTCAGACCCGTACGTCACTTTCTTCTTGATCCGTGACGGG
AAGAAAATCAAGAAACGTAAAACAACATTCAAAACAATGACTTTGAACCC
GACATTTAATGCTAGTTTTGCTTTCGAAGCAAGTTATGATGATTTGGATG
AACTTTCTCTACTTTTCTGTGTAGCTGATTATGATAAGGGTGAACCTGGT
GAACCTATCGGACAATGTGTTATTGGACAGCTTGGGAATACAGATTTGGG
AGCTGTGCAATGGAAAAACATGATGGATGGTCCTAATAAACCTTGGTTGG
TATGGCACATGTTAAGACCTATACCTCCAAAAGACTAAATGTGGTGAAAT
CAAAAAACAAGAATAACTTGATGAATGAGTACAgctgactctctctaatt
cgatcttcataggaccaaaaattttcttcggaTAAGAGAAAGATTCCAAT
GACAGAAAGTAATTTATACCACTTTTTAGCTAAAGGGACCAATATCTTAT
GTTACAGAAAGATTATTAAAATAATGGAATAATAGAGAGAGTAGTTCAAA
ATTCTAAGAAGTacaattatcaaaaataattttttctgagTGCATATTTT
CCTCGGTGATGCGTTCGTTCTTTAACggtttgattttctgaaaaactggc
caaaactggagtcgtttataatcatTGTActacagtaatatgggtgttat
atgataatatgatGATTGTCACGGGATAGTATCAGTTCGTACTCGAGTTT
GCAGTATAGACTCTtcctttattttttgttttgcttatttttacaATGCC
TG Coding sequence (CDS) from alignment at sc0000049:65199..67200 >TCONS_00004949 ID=TCONS_00004949|Name=TCONS_00004949|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000049:65199..67200 (Clytia hemisphaerica)
ATGAGTAATATTGATTGGAATGAAATCTTAGAAAAGGTCGTTCATTACAT
CAAACTTGCATATacaacattttggaatttcttaGAAAGTCTCCCCATTC
CTCCCGAACAAACGCTCGGTATCACAGCaggtgttattgtttttatttgg
cTGGTCACGTGTTGTATATGCTGCCGATTCTGTCGCCCGAAAGAGGAGAA
AGCTGAAGTTCCAGGAAAGTTAGATCTACGtaaaaaccatttatttggac
caAATTATCGAGAGCGGACTTTTCAACGTGTCGATGAAATGGATTATAAC
ATAGAAGCAACACAGTTTGACGCTTTGTCCGAAATCAAACTTGCACAGAT
TCGATATACTGTTGATTTTGATCAGGAGGAAAGTATAGCCATTGTTACGG
TGCACGAATGTAAAGATTTACCGCCGGAGCCCGAAGATGAAGAAGCTCCG
GATCCGTATGTTGAAGTTAAACTAAAACCGGCTGCTAAGAAATCCTATAA
AACCAAAGTCAAGAATAATAACCATCAcccaaaatttgaagaaacattta
atttcaagaaaataatttataatgGTTTTAAAATGAGTGATTTGATCTTT
CGAGTGATGCATGATGATTTTGGTAAAGACGATTTGCTCGGTGAAGCTAT
TGTTTCCATTAAAGATCTCGACATGAGTAAAGGGAAGGTGACCAAGGTAC
AAGTATTAGCACCAGAGTTCAAATCAGAGGCTAAAGTACCGTGGAAAGAT
ACAAAGCTAGGACATATTTGTATTGGGCTTGGCTACGCACCTAATTCAAG
TGTTTTAGCGGTATTTATCTTGAGTTGTAAAAATTTAGCGGCAGTTGATG
ACAGCGGCTTCTCAGACCCGTACGTCACTTTCTTCTTGATCCGTGACGGG
AAGAAAATCAAGAAACGTAAAACAACATTCAAAACAATGACTTTGAACCC
GACATTTAATGCTAGTTTTGCTTTCGAAGCAAGTTATGATGATTTGGATG
AACTTTCTCTACTTTTCTGTGTAGCTGATTATGATAAGGGTGAACCTGGT
GAACCTATCGGACAATGTGTTATTGGACAGCTTGGGAATACAGATTTGGG
AGCTGTGCAATGGAAAAACATGATGGATGGTCCTAATAAACCTTGGTTGG
TATGGCACATGTTAAGACCTATACCTCCAAAAGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004949-exon-sc0000049-1491911889:65199..67200 | TCONS_00004949-exon-sc0000049-1491911889:65199..67200 | Clytia hemisphaerica | exon |
| TCONS_00004949-exon-sc0000049-1510915933:65199..67200 | TCONS_00004949-exon-sc0000049-1510915933:65199..67200 | Clytia hemisphaerica | exon |
| TCONS_00004949-exon-sc0000049-1575043694:65199..67200 | TCONS_00004949-exon-sc0000049-1575043694:65199..67200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:65199..67200 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000008 | C2_dom |
Blast
BLAST of TCONS_00004949 vs. Swiss-Prot (Human)
Match: SYT5 (Synaptotagmin-5 OS=Homo sapiens GN=SYT5 PE=1 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 5.925e-33 Identity = 106/366 (28.96%), Postives = 176/366 (48.09%), Query Frame = -3
Query: 483 PIPP--EQTLGITAGVIVFIWLVTCCICC--RFCRPKE-EKAEVPGKLDLRKNHLFGPNYRERTFQRVDEMDYNIEATQFDALSEIKLAQIRYTVDFDQEESIAIVTVHECKDLXXXXXXXXXXXXXXXVKLKPAAKKSYKTKVKNNNHHPKFEETFNFKKIIYNGFKMSDLIFRVMH-DDFGKDDLLGEAIVSIKDLDMSKG-KVTKVQVLAPEFKSEAKVPWKDTKLGHICIGLGYAPNSSVLAVFILSCKNLAAVDDSGFSDPYVTFFLIRDGXXXXXXXXXXXXXTLNPTFNASFAFEASYDDLDELSLLFCVADYDKGEPGEPIGQCVIGQLGNTDLGAVQWKNMMDGPNKPWLVWHMLRP 1559
P+PP T+ + +G+++F +CC C + CR + +K++ ++ L++ G +Y ++ V+E++ + +L +++Y++D+D + +V + + L + L P ++ Y+TKV +P F ETF FK + Y L+ V D F ++D +GE V + +D+ + + + AP + E KLG IC L Y P + L V +L KNL +D G SDPYV L++ GKK++K+KTT K TLNP +N +F+FE D + ++ + V DYDK E I V G W +M+ P +P WH LRP
Sbjct: 26 PVPPWALATIVLVSGLLIF----SCCFCLYRKSCRRRTGKKSQAQAQVHLQEVKGLGQSYIDKVQPEVEELEPAPSGPGQQVADKHELGRLQYSLDYDFQSGQLLVGILQAMGLAALDLGGSSDPYVRVYLL-PDKRRRYETKVHRQTLNPHFGETFAFK-VPYVELGGRVLVMAVYDFDRFSRNDAIGEVRVPMSSVDLGRPVQAWRELQAAPREEQE--------KLGDICFSLRYVPTAGKLTVIVLEAKNLKKMDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFEVPCDQVQKVQVELTVLDYDKLGKNEAI-GRVAVGAAAGGAGLRHWADMLANPRRPIAQWHSLRP 376
The following BLAST results are available for this feature:
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