TCONS_00005083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005083
Unique NameTCONS_00005083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005083 ID=TCONS_00005083|Name=TCONS_00005083|organism=Clytia hemisphaerica|type=transcript|length=827bp
tNATAGTTGTTTACATGTCAAACGAATCGAATTTAACTTATCTGTTTTCT
CAGAGGTTATTACTCGGAGAATGCCCAGGTTAAGTCTCTCTTCGAGTGgc
actttttatttttaccgTAAAACTGAAGAAACGAAGATTGGCGAAACTTT
GGAGATTAAAGAGTTTGATTCTCAAAGTAAGCTTAAGTATTCTTACTCCA
TCCATCTTCTTGGCGAGTTGAATATACTTTACGATTTTGTGGAGATTGAA
CGATCAATGCTCATTGTGTTGAAGCGAAATAATGGTGTTGTAACCNTGAA
TAttagaaaaattgataaaaatgttttatttcattACTAGATTGAGACTT
TTTGCTTTACTTTTCATTTATCCATAATCGAAGATTGTAATTACAGGTGG
TCCTctcttaaaggaagaaattttggcgggaagaaaatttggccaaatta
agttcccgccaaatttaattttttcgtcATCCACCAAATCAAATTCCCAA
gcttctgcgtagctagccgggtatctataaggctggaacaccggattctt
ccagtcgtttatgcAAACTAAATCCTGTATTACTATTTGTATTAGTATTA
Ttaatattacacgcattataagcgactccagtctacaccaagccaaattt
ttcaaaaatctcagaaattttgtaaacattcgattaaaaaaaacgtTCAG
ATTTGGGGAGTAGTGGAATGTGGCTAATCTGGGCTATTTGTGGAaggact
tttttttatttgaccacTTCTAAATCTTTTTGAACAGAATATTTCAGGCT
GGCATATATGCTTACGTTATGCTCAGG
Run BLAST on NCBI

protein sequence of TCONS_00005083-protein

>TCONS_00005083-protein ID=TCONS_00005083-protein|Name=TCONS_00005083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
XSCLHVKRIEFNLSVFSEVITRRMPRLSLSSSGTFYFYRKTEETKIGETL
EIKEFDSQSKLKYSYSIHLLGELNILYDFVEIERSMLIVLKRNNGVVTXN
IRKIDKNVLFHY
Run BLAST on NCBI

transcript from alignment at sc0000050:99811..100637

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005083 ID=TCONS_00005083|Name=TCONS_00005083|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at sc0000050:99811..100637 (Clytia hemisphaerica)
CCTGAGCATAACGTAAGCATATATGCCAGCCTGAAATATTCTGTTCAAAA
AGATTTAGAAgtggtcaaataaaaaaaagtcctTCCACAAATAGCCCAGA
TTAGCCACATTCCACTACTCCCCAAATCTGAacgttttttttaatcgaat
gtttacaaaatttctgagatttttgaaaaatttggcttggtgtagactgg
agtcgcttataatgcgtgtaatattaATAATACTAATACAAATAGTAATA
CAGGATTTAGTTTgcataaacgactggaagaatccggtgttccagcctta
tagatacccggctagctacgcagaagcTTGGGAATTTGATTTGGTGGATg
acgaaaaaattaaatttggcgggaacttaatttggccaaattttcttccc
gccaaaatttcttcctttaagagAGGACCACCTGTAATTACAATCTTCGA
TTATGGATAAATGAAAAGTAAAGCAAAAAGTCTCAATCTAGTaatgaaat
aaaacatttttatcaatttttctaaTATTCANGGTTACAACACCATTATT
TCGCTTCAACACAATGAGCATTGATCGTTCAATCTCCACAAAATCGTAAA
GTATATTCAACTCGCCAAGAAGATGGATGGAGTAAGAATACTTAAGCTTA
CTTTGAGAATCAAACTCTTTAATCTCCAAAGTTTCGCCAATCTTCGTTTC
TTCAGTTTTAcggtaaaaataaaaagtgcCACTCGAAGAGAGACTTAACC
TGGGCATTCTCCGAGTAATAACCTCTGAGAAAACAGATAAGTTAAATTCG
ATTCGTTTGACATGTAAACAACTATNa

Coding sequence (CDS) from alignment at sc0000050:99811..100637

>TCONS_00005083 ID=TCONS_00005083|Name=TCONS_00005083|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000050:99811..100637 (Clytia hemisphaerica)
CTAGTaatgaaataaaacatttttatcaatttttctaaTATTCANGGTTA
CAACACCATTATTTCGCTTCAACACAATGAGCATTGATCGTTCAATCTCC
ACAAAATCGTAAAGTATATTCAACTCGCCAAGAAGATGGATGGAGTAAGA
ATACTTAAGCTTACTTTGAGAATCAAACTCTTTAATCTCCAAAGTTTCGC
CAATCTTCGTTTCTTCAGTTTTAcggtaaaaataaaaagtgcCACTCGAA
GAGAGACTTAACCTGGGCATTCTCCGAGTAATAACCTCTGAGAAAACAGA
TAAGTTAAATTCGATTCGTTTGACATGTAAACAACTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002879XLOC_002879Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005083-proteinTCONS_00005083-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005083-exon-sc0000050-1491911889:99811..100637TCONS_00005083-exon-sc0000050-1491911889:99811..100637Clytia hemisphaericaexon
TCONS_00005083-exon-sc0000050-1510915933:99811..100637TCONS_00005083-exon-sc0000050-1510915933:99811..100637Clytia hemisphaericaexon
TCONS_00005083-exon-sc0000050-1575043694:99811..100637TCONS_00005083-exon-sc0000050-1575043694:99811..100637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:99811..100637 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.533655	0.542472	0.284835	0.40929	0.784591	0.716576	0.260238	0.594754	0.587834	0.708008	0.068155	0.661565	0.19328	0.264623	0.467532	0.280303	0.587506	0.347346	0.327473	0.132871	0.719914	0.522283	0.0723888	0.394544	0.399133	0.704505	0.676128	1.10221	0.481295	0.345995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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