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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005084 ID=TCONS_00005084|Name=TCONS_00005084|organism=Clytia hemisphaerica|type=transcript|length=1788bp
agcttttttatatgaATTGACACGGATTTGGAGCAAATTGgttagaaaga
gaaaaagaaaaacatttttttgcttatatcagcacaatataacaataggg
agacactgtcctgatataaaatatgtgtctgatatgaaatatgaacattt
atgtaaaaataataaaagctTTAATCAAAGCTTTATTACCTTATTACGTT
TTCTTGTATTTTATCTAGtttaaaagacaaaaaaaaatacaaaatggcAG
TATGCAAGACAATCAGAACCAAAGAAGGGATTGTTGATTTTCTAATCCAA
TCAGAAAATGGAGATGAGTGTATATCAGCTTTCAAATATTCGGATGGAAA
AGTGGAAGTTCATTCATTGAGAGTCGATTGCACTCCTCTTAATTTGGATG
AGAATACTGCAGTTAATTTGTTATCACATGACCAGTTCCCCTCCTTATTG
GTTGCTATGACACCAAAACAGAATCAGAGTTTGGAAATTCGAATCTGGGG
TGCGTCTGGTAATCAAGGTTTCATACAAAAGGATATTCAACCAAAACTGG
ATTCTAAAAAGGATGGTAAACCGCGGTACACTTTTCCAATCAAACATTTC
ACAAAAGAGGTGCTGACTGAATTTATAACTTCTAGTTACAAAGATATGAT
TAATCTCACCATTAATGGTACTATATCTATCATGGTGCATTTCCGACTTT
TGGAGTCTGGTTGTTTTTATATTGAAACAAAAGATAGCTACATTTTTACG
GAACCAAGCCATATTaaacaaacaatatttttaaaaggaCAGGATAAACT
GTATATAGCAGCTATGGAGACAAACAACATTAATTTGTTGGCACTTGAAA
ATGATAAGTTATCACTAAGCCATTCCATACATATGGCAGGGACTTCGTTG
AAAAGATTGCACCGAGTAACGCTTTCAAAATGTCTCGTTATTGATAACAT
GGGGCAAATCTCTTTATTTTCAATACCAAACGAAttgatttctttgaaat
ttccaaGTTCTATGAATGGACATGGGATATGCAGTGCAGTAGGATTCAAA
CACACCAATGAGGGGATACTCGCAATCTGTAATAACGAGTCAACCATTAA
TTTCTACTACCTTGCTGATATTTTGTGCAGTGTCACCAATAAAAAATCAT
TCTTTGTGAAACCTTACCGTGCTTTTTGTAGCCAGTTTCCCATTAATGCA
TTGAACTTTTTGAAGAGTAACCAATTAGCTATGGTGTCCACAGTTAACCA
GTCAATCACTCTACTCGGTGGCTTGTCTAATGGGAGTATTTAATTACAta
acaattttatacaaaaagaCTTCAAATTGACACTTGGTAATGCATACTCT
ATgatatgaaaatcaaattcaaaaaccTTCCCTGACTTATGGTTTGCTGA
TGGTTCCTTTGATAATGAGTTATACCTTGTTTCGTTTTAGTTCTGCGAAA
ATTGAATAttagaaaaattgataaaaatgttttatttcattACTAGATTG
AGACTTTTTGCTTTACTTTTCATTTATCCATAATCGAAGATTGTAATTAC
AGGTGGTCCTctcttaaaggaagaaattttggcgggaagaaaatttggcc
aaattaagttcccgccaaatttaattttttcgtcATCCACCAAATCAAAT
TCCCAAgcttctgcgtagctagccgggtatctataaggctggaacaccgg
attcttccagtcgtttatgcAAACTAAATCCTGTATTACTATTTGTATTA
GTATTATtaatattacacgcattataagcgactccagt Run BLAST on NCBI protein sequence of TCONS_00005084-protein >TCONS_00005084-protein ID=TCONS_00005084-protein|Name=TCONS_00005084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MAVCKTIRTKEGIVDFLIQSENGDECISAFKYSDGKVEVHSLRVDCTPLN
LDENTAVNLLSHDQFPSLLVAMTPKQNQSLEIRIWGASGNQGFIQKDIQP
KLDSKKDGKPRYTFPIKHFTKEVLTEFITSSYKDMINLTINGTISIMVHF
RLLESGCFYIETKDSYIFTEPSHIKQTIFLKGQDKLYIAAMETNNINLLA
LENDKLSLSHSIHMAGTSLKRLHRVTLSKCLVIDNMGQISLFSIPNELIS
LKFPSSMNGHGICSAVGFKHTNEGILAICNNESTINFYYLADILCSVTNK
KSFFVKPYRAFCSQFPINALNFLKSNQLAMVSTVNQSITLLGGLSNGSI Run BLAST on NCBI transcript from alignment at sc0000050:100690..102477 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005084 ID=TCONS_00005084|Name=TCONS_00005084|organism=Clytia hemisphaerica|type=transcript|length=1788bp|location=Sequence derived from alignment at sc0000050:100690..102477 (Clytia hemisphaerica)
actggagtcgcttataatgcgtgtaatattaATAATACTAATACAAATAG
TAATACAGGATTTAGTTTgcataaacgactggaagaatccggtgttccag
ccttatagatacccggctagctacgcagaagcTTGGGAATTTGATTTGGT
GGATgacgaaaaaattaaatttggcgggaacttaatttggccaaattttc
ttcccgccaaaatttcttcctttaagagAGGACCACCTGTAATTACAATC
TTCGATTATGGATAAATGAAAAGTAAAGCAAAAAGTCTCAATCTAGTaat
gaaataaaacatttttatcaatttttctaaTATTCAATTTTCGCAGAACT
AAAACGAAACAAGGTATAACTCATTATCAAAGGAACCATCAGCAAACCAT
AAGTCAGGGAAggtttttgaatttgattttcatatcATAGAGTATGCATT
ACCAAGTGTCAATTTGAAGtctttttgtataaaattgttaTGTAATTAAA
TACTCCCATTAGACAAGCCACCGAGTAGAGTGATTGACTGGTTAACTGTG
GACACCATAGCTAATTGGTTACTCTTCAAAAAGTTCAATGCATTAATGGG
AAACTGGCTACAAAAAGCACGGTAAGGTTTCACAAAGAATGATTTTTTAT
TGGTGACACTGCACAAAATATCAGCAAGGTAGTAGAAATTAATGGTTGAC
TCGTTATTACAGATTGCGAGTATCCCCTCATTGGTGTGTTTGAATCCTAC
TGCACTGCATATCCCATGTCCATTCATAGAACttggaaatttcaaagaaa
tcaaTTCGTTTGGTATTGAAAATAAAGAGATTTGCCCCATGTTATCAATA
ACGAGACATTTTGAAAGCGTTACTCGGTGCAATCTTTTCAACGAAGTCCC
TGCCATATGTATGGAATGGCTTAGTGATAACTTATCATTTTCAAGTGCCA
ACAAATTAATGTTGTTTGTCTCCATAGCTGCTATATACAGTTTATCCTGt
ccttttaaaaatattgtttgtttAATATGGCTTGGTTCCGTAAAAATGTA
GCTATCTTTTGTTTCAATATAAAAACAACCAGACTCCAAAAGTCGGAAAT
GCACCATGATAGATATAGTACCATTAATGGTGAGATTAATCATATCTTTG
TAACTAGAAGTTATAAATTCAGTCAGCACCTCTTTTGTGAAATGTTTGAT
TGGAAAAGTGTACCGCGGTTTACCATCCTTTTTAGAATCCAGTTTTGGTT
GAATATCCTTTTGTATGAAACCTTGATTACCAGACGCACCCCAGATTCGA
ATTTCCAAACTCTGATTCTGTTTTGGTGTCATAGCAACCAATAAGGAGGG
GAACTGGTCATGTGATAACAAATTAACTGCAGTATTCTCATCCAAATTAA
GAGGAGTGCAATCGACTCTCAATGAATGAACTTCCACTTTTCCATCCGAA
TATTTGAAAGCTGATATACACTCATCTCCATTTTCTGATTGGATTAGAAA
ATCAACAATCCCTTCTTTGGTTCTGATTGTCTTGCATACTgccattttgt
atttttttttgtcttttaaaCTAGATAAAATACAAGAAAACGTAATAAGG
TAATAAAGCTTTGATTAAagcttttattatttttacataaatgttcatat
ttcatatcagacacatattttatatcaggacagtgtctccctattgttat
attgtgctgatataagcaaaaaaatgtttttctttttctctttctaacCA
ATTTGCTCCAAATCCGTGTCAATtcatataaaaaagct Coding sequence (CDS) from alignment at sc0000050:100690..102477 >TCONS_00005084 ID=TCONS_00005084|Name=TCONS_00005084|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000050:100690..102477 (Clytia hemisphaerica)
TTAAATACTCCCATTAGACAAGCCACCGAGTAGAGTGATTGACTGGTTAA
CTGTGGACACCATAGCTAATTGGTTACTCTTCAAAAAGTTCAATGCATTA
ATGGGAAACTGGCTACAAAAAGCACGGTAAGGTTTCACAAAGAATGATTT
TTTATTGGTGACACTGCACAAAATATCAGCAAGGTAGTAGAAATTAATGG
TTGACTCGTTATTACAGATTGCGAGTATCCCCTCATTGGTGTGTTTGAAT
CCTACTGCACTGCATATCCCATGTCCATTCATAGAACttggaaatttcaa
agaaatcaaTTCGTTTGGTATTGAAAATAAAGAGATTTGCCCCATGTTAT
CAATAACGAGACATTTTGAAAGCGTTACTCGGTGCAATCTTTTCAACGAA
GTCCCTGCCATATGTATGGAATGGCTTAGTGATAACTTATCATTTTCAAG
TGCCAACAAATTAATGTTGTTTGTCTCCATAGCTGCTATATACAGTTTAT
CCTGtccttttaaaaatattgtttgtttAATATGGCTTGGTTCCGTAAAA
ATGTAGCTATCTTTTGTTTCAATATAAAAACAACCAGACTCCAAAAGTCG
GAAATGCACCATGATAGATATAGTACCATTAATGGTGAGATTAATCATAT
CTTTGTAACTAGAAGTTATAAATTCAGTCAGCACCTCTTTTGTGAAATGT
TTGATTGGAAAAGTGTACCGCGGTTTACCATCCTTTTTAGAATCCAGTTT
TGGTTGAATATCCTTTTGTATGAAACCTTGATTACCAGACGCACCCCAGA
TTCGAATTTCCAAACTCTGATTCTGTTTTGGTGTCATAGCAACCAATAAG
GAGGGGAACTGGTCATGTGATAACAAATTAACTGCAGTATTCTCATCCAA
ATTAAGAGGAGTGCAATCGACTCTCAATGAATGAACTTCCACTTTTCCAT
CCGAATATTTGAAAGCTGATATACACTCATCTCCATTTTCTGATTGGATT
AGAAAATCAACAATCCCTTCTTTGGTTCTGATTGTCTTGCATACTgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005084-exon-sc0000050-1491911889:100690..102477 | TCONS_00005084-exon-sc0000050-1491911889:100690..102477 | Clytia hemisphaerica | exon |
| TCONS_00005084-exon-sc0000050-1510915933:100690..102477 | TCONS_00005084-exon-sc0000050-1510915933:100690..102477 | Clytia hemisphaerica | exon |
| TCONS_00005084-exon-sc0000050-1575043694:100690..102477 | TCONS_00005084-exon-sc0000050-1575043694:100690..102477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:100690..102477 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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