TCONS_00005092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005092
Unique NameTCONS_00005092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005092 ID=TCONS_00005092|Name=TCONS_00005092|organism=Clytia hemisphaerica|type=transcript|length=288bp
ACGTGATTCTcaggcgccatcttggattcCGTTCGGAGGAAATAAACCCA
CGGCCGCAGTAGAATCGATATTCTTTACAGCACGCAGCCTAAGACGACCC
GATCAAATCGATTAAATTTTATGCGAATGTCCCCGATTGAATCGCACCAA
AAGAGCAACCATGGCACGGACAGGAGTGAGAGAGGacataaaaacagaac
acggcACGGACTGCGGACAGACAGGACAGGACAGACACACGGAAAGTTCC
TCTTGAAAGGCCCcttcgctagcgctgggccaataaca
Run BLAST on NCBI

transcript from alignment at sc0000050:216195..216482

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005092 ID=TCONS_00005092|Name=TCONS_00005092|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000050:216195..216482 (Clytia hemisphaerica)
tgttattggcccagcgctagcgaagGGGCCTTTCAAGAGGAACTTTCCGT
GTGTCTGTCCTGTCCTGTCTGTCCGCAGTCCGTgccgtgttctgttttta
tgtCCTCTCTCACTCCTGTCCGTGCCATGGTTGCTCTTTTGGTGCGATTC
AATCGGGGACATTCGCATAAAATTTAATCGATTTGATCGGGTCGTCTTAG
GCTGCGTGCTGTAAAGAATATCGATTCTACTGCGGCCGTGGGTTTATTTC
CTCCGAACGgaatccaagatggcgcctgAGAATCACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002888XLOC_002888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005092-exon-sc0000050-1491911889:216195..216482TCONS_00005092-exon-sc0000050-1491911889:216195..216482Clytia hemisphaericaexon
TCONS_00005092-exon-sc0000050-1510915933:216195..216482TCONS_00005092-exon-sc0000050-1510915933:216195..216482Clytia hemisphaericaexon
TCONS_00005092-exon-sc0000050-1575043694:216195..216482TCONS_00005092-exon-sc0000050-1575043694:216195..216482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:216195..216482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.92813	5.33946	6.62782	10.8586	3.82764	3.64767	5.74866	4.65619	4.39991	5.51676	2.4818	3.46145	5.46904	6.04121	6.11996	5.3139	6.39143	6.443	2.6772	3.9471	3.07453	0	1.49519	2.62527	4.40828	2.99737	0.695969	2.82793	0.99198	1.48366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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