TCONS_00005096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005096
Unique NameTCONS_00005096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005096 ID=TCONS_00005096|Name=TCONS_00005096|organism=Clytia hemisphaerica|type=transcript|length=212bp
TTTTatcttttgttcttatagagtAGATTAAGAGAGAGGGCTTGGTCccc
aaaatatatattatatgaAAGCTAAAAGTATATGTGTCAACTTCATCAAT
GGTAGCAGAGGGTGGTTACTATGAGAGATATCGGATTGAACTCGAAGCGT
GGCGAGAAATTACCGACCTAGAAGCAGAGAAACAGGGCATAGCTATAGCC
CTCACACTCCCN
Run BLAST on NCBI

transcript from alignment at sc0000050:308253..308464

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005096 ID=TCONS_00005096|Name=TCONS_00005096|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0000050:308253..308464 (Clytia hemisphaerica)
NGGGAGTGTGAGGGCTATAGCTATGCCCTGTTTCTCTGCTTCTAGGTCGG
TAATTTCTCGCCACGCTTCGAGTTCAATCCGATATCTCTCATAGTAACCA
CCCTCTGCTACCATTGATGAAGTTGACACATATACTTTTAGCTTtcatat
aatatatattttgggGACCAAGCCCTCTCTCTTAATCTactctataagaa
caaaagatAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002892XLOC_002892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005096-exon-sc0000050-1491911889:308253..308464TCONS_00005096-exon-sc0000050-1491911889:308253..308464Clytia hemisphaericaexon
TCONS_00005096-exon-sc0000050-1510915933:308253..308464TCONS_00005096-exon-sc0000050-1510915933:308253..308464Clytia hemisphaericaexon
TCONS_00005096-exon-sc0000050-1575043694:308253..308464TCONS_00005096-exon-sc0000050-1575043694:308253..308464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:308253..308464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79694	0	4.75025	3.09825	7.54365	20.8638	10.7877	8.41611	1.17846	2.91943	14.1684	8.38235	5.58047	4.82947	0.794097	4.26094	4.1993	5.38018	7.43302	1.55562	4.05636	1.97855	1.60346	1.45777	12.0118	20.1004	5.75273	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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