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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005100 ID=TCONS_00005100|Name=TCONS_00005100|organism=Clytia hemisphaerica|type=transcript|length=3043bp TGCCAATTCAAAGGTTTAAAGAAAGCAAAGGGGCACCAAAATTAGTAATT AGAGGCGTCTTTTTTCGCCCTTTATATTTTGGTGCACCCCCAAGAAATCA GCCGCTGGGGGTTCGGTGCCTCCCTGTCACCATGCTACTGAATAGTAAAT GAATAAGACAACAGATGGAAATATTTAGAAATAAATTGATAAATGTATAT CTATAAAATCTTGAGtaattataattttgaaaaaaaaatataagctGAGA ATATTTTAGATGAATTATTTGTACAGGTTTCGATCAAAGTTTTTACCCCA GAGGGGGGCATTAACCTTGACAGCCATTAACAGCCGacagggacgtgccg ctggagtttgaaaaagtgaaccctgtcagatatgaatgtttggaaaattg gggaccctaccaaatcgaaaaatcgatCTTCCTATTTTCACCCTAAAAAG TCgcaaaaatggctaaaaagtttttttgaatttttccatcTTGAAAGTTG AAGTTTTTTGCTTTATGTTTGAGCTGTAGGCATTTTGAGGTATTACAATT TTACTTGTAAAAATACATAATAATCAGAtatctgaaaaaaagttttttac gcTATTCTTCACTTCTTTGAATGCAAATTGTGCACTTGCACCATTTAATC GACATTGTTTTTATTCCATATTGCCATTATAGCtggttgacaaaaatatt tataatgttCATTTAATGTCATTGGTGTTAATTGGGCGTTGTTTTCAAGT TCTATCTCAGGTTGGTATATCCATCAATGGATTCGAATTATACTTCAATA TTGTTTCTGCAGTACAGGCAAGTTAAGCCAAGTTTTTGTCAATCGTTGTA CTTCTTTTTAGTTAATTCCAAGCTTAATGATTATTATACGATTCGGTTTG GTTTTTAGCTAGTTGAGTTCATATCCTCGTGATAGTGATAAAGTTTCTAG ATTGCAAGATCCGTACCAGCTGTGAAAGAATGACTGCGTTTCATGCTGCG TCTGAATGACGGTTGGTTGTAATGGAAAGGTGATTGAATGGTCTTTTGGC GCGGCGACGATAATCCGTCCCCATCTCTCATTTCCATAAGAGAATAACGT AACTCTAATAATTCATCATGTAAGACATCGAAGGAGTCACTCATATTTTT GATGTGGGATAACATCTCGACATGGGACACTGCATTCTTCTCCATGATAT CTTGCATATTAACGAAAGGGTGTCTGACGCTTTTGAAAATCTTGATGGCG GTTAAATAACGTAGTTTCATGATAAATCGAAGGGCTATTTTGTAACGCTC ACGGATTTGTTGGTGTATTTTAACATCTGCCATTTCGTTGTTATGATGAG AAGCGCCATTATTTTTTCCATGGGGATGATGATTTGACGATGTCTTAGAC TCGGTACGCTGGTATTTGCTTTGCCGTGATTTTGGTATTAAGATAGCATC CCGGCTAATTATATTCGATTGTGACATGGCAGATGTATCAGTACCTCGTC CAATGATTTTGCCTAATCTTTTAATGCCTTCTTCCAAGGGATTATGGTTA TTGTTGTTCAGCATTGGAACAAAGTATTTGTCCATTCGTGGTGATTCGGT TTTACGTATGAAATCACCGTTTCGGGAGCGTATCCCGTCGGATGAAAAGA CGGGCGGAAACATTGTTCCCATGTCATAATTTCCTTTCGCGATTTCCGAT TTCATCATTTGTTCCAAAGTCTGTTCTTTTGGTGTTTCGTAATCATCTTT TAACATAGGTAGTAAATATTTCCACGTACCTTCCGAATCATTATGTCCCT TACGTAATGCGTAATTACGCCATGCCGTTTGGATGAGATACGCAGCTGGA CTACGTACTTTCACGTACCGTTTCTCTTTTTTCTGTTTAGCTACTTGTAA AGCGAAACCAGAACCCAAAATACCAGCAGGTAGGGAGAAAAACGCACAAC CGATTAAAGCGAAGACAGCTGTAAAAACTTTCCCCGCCCACGTAATAGGT GATATATCACCGTAGCCTACCGAAGTTACTGTTATAACGGCCCAGTACAG ACCATTTGCCATATTGTTAATAGTAACTTCACTTAAAGTCTCGTTTGAAG AAGATGTTGGTGTTGGGTCTGGCACATCAGCTGCTGTCTTCTCCAAAGGC TCAGTATGTTTCTCAACTAAATAAACAATGTATGTAGCTGAAAACATAAT GACAAATCCGACAAAATAAACAGTGATTAGTTCCTTTGAATGTTCTTTGA CAACGTTACCCATAGTCCGGAAATCACCACGTTGACGGTCAATACGTAAG ATACGGAAGACTTGCATGAAACGCGTAACACGTAGAATAGCGAAATAAGA TCCATTGATCTGCATCacaaaagtggtaatagtggaTAGGATGACGAATA TATCGATTAACATATAGATGGAAAATAAAAACCGTAAATGTCCTCTGGTT CCTTGGTAACGTGAAATATAACTACAAGACCAGAGACGTAAACCAAATTC ACCAAAGAACCATATCAGTAAGAAAAGTTCGTAGTAAAACATAACTGAAA TCATTTTATCTTCCATTTCCTCAATAGTTGAAAGGACACTAACAACCAGA CTACCAACAATTAACatcaatgatgtaaaatggtaaatcACTGCGAAACG CGTGTTTGGTCTTTCCAATAAGAAGTAGACCCATTTTTTGGCTGTATTAT AATTGATTTCaggtttttcttcaaaatctgCAGATATCAAATACGGTGTT TTCTCTTTGATAACTGGTGCTTCATTCTTGGATACTATGATAGTATCCAG ATGTATATTTTCACTCATTCCCTCAGCAATCAATCTCTCCTGACGAATAT ATGTTTTGTCACAACTTCGCTCAAGTCACGAATGACGCATGTATAGTTTT TTGAATTCACCTTTTTATTTATACCTCACGATAACAAACAAAGGTAAAAG ATACTTTAgtaagcaaaacaaaaattttgctgATGGTCTGATAAGGACCC ACTtgtgaatttatatttttaaaacaaCAATAAAGACTGTCTT Run BLAST on NCBI protein sequence of TCONS_00005100-protein >TCONS_00005100-protein ID=TCONS_00005100-protein|Name=TCONS_00005100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MSENIHLDTIIVSKNEAPVIKEKTPYLISADFEEKPEINYNTAKKWVYFL LERPNTRFAVIYHFTSLMLIVGSLVVSVLSTIEEMEDKMISVMFYYELFL LIWFFGEFGLRLWSCSYISRYQGTRGHLRFLFSIYMLIDIFVILSTITTF VMQINGSYFAILRVTRFMQVFRILRIDRQRGDFRTMGNVVKEHSKELITV YFVGFVIMFSATYIVYLVEKHTEPLEKTAADVPDPTPTSSSNETLSEVTI NNMANGLYWAVITVTSVGYGDISPITWAGKVFTAVFALIGCAFFSLPAGI LGSGFALQVAKQKKEKRYVKVRSPAAYLIQTAWRNYALRKGHNDSEGTWK YLLPMLKDDYETPKEQTLEQMMKSEIAKGNYDMGTMFPPVFSSDGIRSRN GDFIRKTESPRMDKYFVPMLNNNNHNPLEEGIKRLGKIIGRGTDTSAMSQ SNIISRDAILIPKSRQSKYQRTESKTSSNHHPHGKNNGASHHNNEMADVK IHQQIRERYKIALRFIMKLRYLTAIKIFKSVRHPFVNMQDIMEKNAVSHV EMLSHIKNMSDSFDVLHDELLELRYSLMEMRDGDGLSSPRQKTIQSPFHY NQPSFRRSMKRSHSFTAGTDLAI Run BLAST on NCBI transcript from alignment at sc0000050:386484..389526 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005100 ID=TCONS_00005100|Name=TCONS_00005100|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at sc0000050:386484..389526 (Clytia hemisphaerica) AAGACAGTCTTTATTGttgttttaaaaatataaattcacaAGTGGGTCCT
TATCAGACCATcagcaaaatttttgttttgcttacTAAAGTATCTTTTAC
CTTTGTTTGTTATCGTGAGGTATAAATAAAAAGGTGAATTCAAAAAACTA
TACATGCGTCATTCGTGACTTGAGCGAAGTTGTGACAAAACATATATTCG
TCAGGAGAGATTGATTGCTGAGGGAATGAGTGAAAATATACATCTGGATA
CTATCATAGTATCCAAGAATGAAGCACCAGTTATCAAAGAGAAAACACCG
TATTTGATATCTGcagattttgaagaaaaacctGAAATCAATTATAATAC
AGCCAAAAAATGGGTCTACTTCTTATTGGAAAGACCAAACACGCGTTTCG
CAGTgatttaccattttacatcattgatGTTAATTGTTGGTAGTCTGGTT
GTTAGTGTCCTTTCAACTATTGAGGAAATGGAAGATAAAATGATTTCAGT
TATGTTTTACTACGAACTTTTCTTACTGATATGGTTCTTTGGTGAATTTG
GTTTACGTCTCTGGTCTTGTAGTTATATTTCACGTTACCAAGGAACCAGA
GGACATTTACGGTTTTTATTTTCCATCTATATGTTAATCGATATATTCGT
CATCCTAtccactattaccacttttgtGATGCAGATCAATGGATCTTATT
TCGCTATTCTACGTGTTACGCGTTTCATGCAAGTCTTCCGTATCTTACGT
ATTGACCGTCAACGTGGTGATTTCCGGACTATGGGTAACGTTGTCAAAGA
ACATTCAAAGGAACTAATCACTGTTTATTTTGTCGGATTTGTCATTATGT
TTTCAGCTACATACATTGTTTATTTAGTTGAGAAACATACTGAGCCTTTG
GAGAAGACAGCAGCTGATGTGCCAGACCCAACACCAACATCTTCTTCAAA
CGAGACTTTAAGTGAAGTTACTATTAACAATATGGCAAATGGTCTGTACT
GGGCCGTTATAACAGTAACTTCGGTAGGCTACGGTGATATATCACCTATT
ACGTGGGCGGGGAAAGTTTTTACAGCTGTCTTCGCTTTAATCGGTTGTGC
GTTTTTCTCCCTACCTGCTGGTATTTTGGGTTCTGGTTTCGCTTTACAAG
TAGCTAAACAGAAAAAAGAGAAACGGTACGTGAAAGTACGTAGTCCAGCT
GCGTATCTCATCCAAACGGCATGGCGTAATTACGCATTACGTAAGGGACA
TAATGATTCGGAAGGTACGTGGAAATATTTACTACCTATGTTAAAAGATG
ATTACGAAACACCAAAAGAACAGACTTTGGAACAAATGATGAAATCGGAA
ATCGCGAAAGGAAATTATGACATGGGAACAATGTTTCCGCCCGTCTTTTC
ATCCGACGGGATACGCTCCCGAAACGGTGATTTCATACGTAAAACCGAAT
CACCACGAATGGACAAATACTTTGTTCCAATGCTGAACAACAATAACCAT
AATCCCTTGGAAGAAGGCATTAAAAGATTAGGCAAAATCATTGGACGAGG
TACTGATACATCTGCCATGTCACAATCGAATATAATTAGCCGGGATGCTA
TCTTAATACCAAAATCACGGCAAAGCAAATACCAGCGTACCGAGTCTAAG
ACATCGTCAAATCATCATCCCCATGGAAAAAATAATGGCGCTTCTCATCA
TAACAACGAAATGGCAGATGTTAAAATACACCAACAAATCCGTGAGCGTT
ACAAAATAGCCCTTCGATTTATCATGAAACTACGTTATTTAACCGCCATC
AAGATTTTCAAAAGCGTCAGACACCCTTTCGTTAATATGCAAGATATCAT
GGAGAAGAATGCAGTGTCCCATGTCGAGATGTTATCCCACATCAAAAATA
TGAGTGACTCCTTCGATGTCTTACATGATGAATTATTAGAGTTACGTTAT
TCTCTTATGGAAATGAGAGATGGGGACGGATTATCGTCGCCGCGCCAAAA
GACCATTCAATCACCTTTCCATTACAACCAACCGTCATTCAGACGCAGCA
TGAAACGCAGTCATTCTTTCACAGCTGGTACGGATCTTGCAATCTAGAAA
CTTTATCACTATCACGAGGATATGAACTCAACTAGCTAAAAACCAAACCG
AATCGTATAATAATCATTAAGCTTGGAATTAACTAAAAAGAAGTACAACG
ATTGACAAAAACTTGGCTTAACTTGCCTGTACTGCAGAAACAATATTGAA
GTATAATTCGAATCCATTGATGGATATACCAACCTGAGATAGAACTTGAA
AACAACGCCCAATTAACACCAATGACATTAAATGaacattataaatattt
ttgtcaaccaGCTATAATGGCAATATGGAATAAAAACAATGTCGATTAAA
TGGTGCAAGTGCACAATTTGCATTCAAAGAAGTGAAGAATAgcgtaaaaa
actttttttcagataTCTGATTATTATGTATTTTTACAAGTAAAATTGTA
ATACCTCAAAATGCCTACAGCTCAAACATAAAGCAAAAAACTTCAACTTT
CAAgatggaaaaattcaaaaaaactttttagccatttttgcGACTTTTTA
GGGTGAAAATAGGAAGatcgatttttcgatttggtagggtccccaatttt
ccaaacattcatatctgacagggttcactttttcaaactccagcggcacg
tccctgtCGGCTGTTAATGGCTGTCAAGGTTAATGCCCCCCTCTGGGGTA
AAAACTTTGATCGAAACCTGTACAAATAATTCATCTAAAATATTCTCagc
ttatatttttttttcaaaattataattaCTCAAGATTTTATAGATATACA
TTTATCAATTTATTTCTAAATATTTCCATCTGTTGTCTTATTCATTTACT
ATTCAGTAGCATGGTGACAGGGAGGCACCGAACCCCCAGCGGCTGATTTC
TTGGGGGTGCACCAAAATATAAAGGGCGAAAAAAGACGCCTCTAATTACT
AATTTTGGTGCCCCTTTGCTTTCTTTAAACCTTTGAATTGGCA Coding sequence (CDS) from alignment at sc0000050:386484..389526 >TCONS_00005100 ID=TCONS_00005100|Name=TCONS_00005100|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000050:386484..389526 (Clytia hemisphaerica) ATGAGTGAAAATATACATCTGGATACTATCATAGTATCCAAGAATGAAGC ACCAGTTATCAAAGAGAAAACACCGTATTTGATATCTGcagattttgaag aaaaacctGAAATCAATTATAATACAGCCAAAAAATGGGTCTACTTCTTA TTGGAAAGACCAAACACGCGTTTCGCAGTgatttaccattttacatcatt gatGTTAATTGTTGGTAGTCTGGTTGTTAGTGTCCTTTCAACTATTGAGG AAATGGAAGATAAAATGATTTCAGTTATGTTTTACTACGAACTTTTCTTA CTGATATGGTTCTTTGGTGAATTTGGTTTACGTCTCTGGTCTTGTAGTTA TATTTCACGTTACCAAGGAACCAGAGGACATTTACGGTTTTTATTTTCCA TCTATATGTTAATCGATATATTCGTCATCCTAtccactattaccactttt gtGATGCAGATCAATGGATCTTATTTCGCTATTCTACGTGTTACGCGTTT CATGCAAGTCTTCCGTATCTTACGTATTGACCGTCAACGTGGTGATTTCC GGACTATGGGTAACGTTGTCAAAGAACATTCAAAGGAACTAATCACTGTT TATTTTGTCGGATTTGTCATTATGTTTTCAGCTACATACATTGTTTATTT AGTTGAGAAACATACTGAGCCTTTGGAGAAGACAGCAGCTGATGTGCCAG ACCCAACACCAACATCTTCTTCAAACGAGACTTTAAGTGAAGTTACTATT AACAATATGGCAAATGGTCTGTACTGGGCCGTTATAACAGTAACTTCGGT AGGCTACGGTGATATATCACCTATTACGTGGGCGGGGAAAGTTTTTACAG CTGTCTTCGCTTTAATCGGTTGTGCGTTTTTCTCCCTACCTGCTGGTATT TTGGGTTCTGGTTTCGCTTTACAAGTAGCTAAACAGAAAAAAGAGAAACG GTACGTGAAAGTACGTAGTCCAGCTGCGTATCTCATCCAAACGGCATGGC GTAATTACGCATTACGTAAGGGACATAATGATTCGGAAGGTACGTGGAAA TATTTACTACCTATGTTAAAAGATGATTACGAAACACCAAAAGAACAGAC TTTGGAACAAATGATGAAATCGGAAATCGCGAAAGGAAATTATGACATGG GAACAATGTTTCCGCCCGTCTTTTCATCCGACGGGATACGCTCCCGAAAC GGTGATTTCATACGTAAAACCGAATCACCACGAATGGACAAATACTTTGT TCCAATGCTGAACAACAATAACCATAATCCCTTGGAAGAAGGCATTAAAA GATTAGGCAAAATCATTGGACGAGGTACTGATACATCTGCCATGTCACAA TCGAATATAATTAGCCGGGATGCTATCTTAATACCAAAATCACGGCAAAG CAAATACCAGCGTACCGAGTCTAAGACATCGTCAAATCATCATCCCCATG GAAAAAATAATGGCGCTTCTCATCATAACAACGAAATGGCAGATGTTAAA ATACACCAACAAATCCGTGAGCGTTACAAAATAGCCCTTCGATTTATCAT GAAACTACGTTATTTAACCGCCATCAAGATTTTCAAAAGCGTCAGACACC CTTTCGTTAATATGCAAGATATCATGGAGAAGAATGCAGTGTCCCATGTC GAGATGTTATCCCACATCAAAAATATGAGTGACTCCTTCGATGTCTTACA TGATGAATTATTAGAGTTACGTTATTCTCTTATGGAAATGAGAGATGGGG ACGGATTATCGTCGCCGCGCCAAAAGACCATTCAATCACCTTTCCATTAC AACCAACCGTCATTCAGACGCAGCATGAAACGCAGTCATTCTTTCACAGC TGGTACGGATCTTGCAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005100-exon-sc0000050-1491911889:386484..389526 | TCONS_00005100-exon-sc0000050-1491911889:386484..389526 | Clytia hemisphaerica | exon |
TCONS_00005100-exon-sc0000050-1510915933:386484..389526 | TCONS_00005100-exon-sc0000050-1510915933:386484..389526 | Clytia hemisphaerica | exon |
TCONS_00005100-exon-sc0000050-1575043694:386484..389526 | TCONS_00005100-exon-sc0000050-1575043694:386484..389526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000050 | supercontig | sc0000050:386484..389526 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006813 | potassium ion transport |
GO:0055085 | transmembrane transport |
GO:0006811 | ion transport |
Vocabulary: Molecular Function
Term | Definition |
GO:0005249 | voltage-gated potassium channel activity |
GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0008076 | voltage-gated potassium channel complex |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
biological_process |
GO:0006813 |
potassium ion transport |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016020 |
membrane |
cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
molecular_function |
GO:0005216 |
ion channel activity |
molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00005100 vs. Swiss-Prot (Human)
Match: KCNQ2 (Potassium voltage-gated channel subfamily KQT member 2 OS=Homo sapiens GN=KCNQ2 PE=1 SV=2) HSP 1 Score: 244.202 bits (622), Expect = 1.769e-67 Identity = 174/605 (28.76%), Postives = 291/605 (48.10%), Query Frame = -1
Query: 1127 GMSENIHLDTIIVSKNEAPVIKE--KTPYLISADFEEKPEIN--YNTAKKWVYFLLERPNTRFAVIYHFTXXXXXXXXXXXXXXSTIEEMEDKMISVMFYYELFLLIWFFGEFGLRLWSCSYISRYQGTRGHLRFLFSIYMLIDIFVILSTITTFVMQINGSYFAI--LRVTRFMQVFRILRIDRQRGDFRTMGNVVKEHSKELITVYFVGFVIMFSATYIVYLVEKHTEPLEKTAADVPDPTPTSSSNETLSEVTINNMANGLYWAVITVTSVGYGDISPITWAGKVFTAVFALIGCAFFSLPAGILGSGFALQVAKQKKEKRYVKVRSPAAYLIQTAWRNYALRKGHNDSEGTWKYLLPMLKDDYETPKEQTLEQMMKSEIAKGNYDMGTMFPPVFSSDGIR---SRNGDFIRKTESPRMDKYFVPMLNNNNHNPLEEXXXXXXXXXXXGTD--------TSAMSQSNIISRDAILIPKSRQSKYQRTESKT---------SSNHHPHGKNNGASHHNNEMADVK--------------IHQQIRERYKIALRFIMKLRYLTAIKIFKSVRHPFVNMQDIMEKNAVSHVEMLSHIKNMSDSFD 2821
G ++ ++++ +EAP P A + P+ N Y + ++Y +LERP +A IYH +L+ LV+SV STI+E E ++ E+ ++ F E+ +R+W+ RY+G RG L+F + +IDI V++++I G+ FA LR RF+Q+ R++R+DR+ G ++ +G+VV HSKEL+T +++GF+ + A+++VYL EK N+ + A+ L+W +IT+T++GYGD P TW G++ A F LIG +FF+LPAGILGSGFAL+V +Q ++K + K R+PAA LIQ+AWR YA D TW+Y E+T+ M S + Y + PP+ + +R S++G RK P P + PL D +A + + ++ P + QS + + SK S AS N+E A + + + + K+++R + +R+L + + FK P+ ++ D++E+ + H++MLS IK++ D
Sbjct: 30 GAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRG-WAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK-------------------GENDHF-----DTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYY------------ERTVTVPMYSSQTQ-TYGASRLIPPLNQLELLRNLKSKSGLAFRKDPPPEPS----PSKGSPCRGPLCGCCPGRSSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQS-LEDSPSKVPKSWSFGDRSRARQAFRIKGAASRQNSEEASLPGEDIVDDKSCPCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPY-DVMDVIEQYSAGHLDMLSRIKSLQSRVD 590
The following BLAST results are available for this feature:
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