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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005130 ID=TCONS_00005130|Name=TCONS_00005130|organism=Clytia hemisphaerica|type=transcript|length=2169bpRun BLAST on NCBI protein sequence of TCONS_00005130-protein >TCONS_00005130-protein ID=TCONS_00005130-protein|Name=TCONS_00005130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp FIVKKSTQNMSQPTTPTSPTPTSPTERGFKRCNSMTPEDFQRDWVRPDLPRun BLAST on NCBI transcript from alignment at sc0000051:280368..292592+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005130 ID=TCONS_00005130|Name=TCONS_00005130|organism=Clytia hemisphaerica|type=transcript|length=12225bp|location=Sequence derived from alignment at sc0000051:280368..292592+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:280368..292592+ >TCONS_00005130 ID=TCONS_00005130|Name=TCONS_00005130|organism=Clytia hemisphaerica|type=CDS|length=26688bp|location=Sequence derived from alignment at sc0000051:280368..292592+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005130 vs. Swiss-Prot (Human)
Match: CBS (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2) HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0 Identity = 311/518 (60.04%), Postives = 394/518 (76.06%), Query Frame = 1
Query: 106 TPEDFQRD---WVRPDLPSTCKWHLGINNKESPHHHVEYPLKKDKILPTILKNIGNTPLVRLNRIPKDHGLKCEVLVKCEFFNAGGSVKDRIGLRMVEEAEREGKIKPGVSTLIEPTSGNTGIGIALAAAVKGYKCIIVMPEKMSMEKVNILRALGAEIVRTPTAASFDAPESHIGVAQRLNQEIKNSIILDQYRNAGNPLAHYDGTAMEILDHCDGKVDMFVXXXXXXXXXXXXXRRLKEKCPNIKIVGVDPYGSLLAEPKELNDTSVNYYEVEGIGYDFVPTVLDRTLVDKWIKTNDKETFIMARELIRKEGLLCGGSSGTALTAAIEAAKDLKEGQRCVVILPDSIRNYMSKHLEDDWMAQRDFI-ELSPDNEKTWWWNEPLSRLNLNTPFTVSPNMTCQTAIEMMNRETYDQMPVVNETGAVIGMITLGNLMQKMVSEKLTPESPVKEALYTNFHKVSLNTNLGKLSRILDHEYYAVVVHTQQYYTDLNTSSEKEIIFGLATRMDLLNFITTQK 1647
+PED + W+RPD PS C W LG ESPHHH P K KILP ILK IG+TP+VR+N+I K GLKCE+L KCEFFNAGGSVKDRI LRM+E+AER+G +KPG T+IEPTSGNTGIG+ALAAAV+GY+CIIVMPEKMS EKV++LRALGAEIVRTPT A FD+PESH+GVA RL EI NS ILDQYRNA NPLAHYD TA EIL CDGK+DM VA GTGGT++G AR+LKEKCP +I+GVDP GS+LAEP+ELN T YEVEGIGYDF+PTVLDRT+VDKW K+ND+E F AR LI +EGLLCGGS+G+ + A++AA++L+EGQRCVVILPDS+RNYM+K L D WM Q+ F+ E +K WWW+ + L L+ P TV P +TC IE++ + +DQ PVV+E G ++GM+TLGN++ +++ K+ P V + +Y F ++ L LG+LS IL+ +++A+VVH Q Y SS+++++FG+ T +DLLNF+ Q+
Sbjct: 32 SPEDKEAKEPLWIRPDAPSRCTWQLGRPASESPHHHTA-PAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLSAPLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVGKVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLLNFVAAQE 547 The following BLAST results are available for this feature:
BLAST of TCONS_00005130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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