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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005157 ID=TCONS_00005157|Name=TCONS_00005157|organism=Clytia hemisphaerica|type=transcript|length=503bp
TGCGAATTTCTGCTGGATCCCATAAAAATAAGATGGCGGACAAAACCAAG
GTCCCTCATAAaagtaaagtaataaaaattgggtcTTATCATGTTGGAAA
GACAATTGGGAAAGGCATGTTCGCCGTCGTTAAGATGGCCGAGCATCATC
AAGCAAAAGCAAAGGTGGCCATCAAGATGATCGATAAAAGCCAGCTGGAC
GAAGAGAACCTGGCCAAAATTCGTCGAGAGGTTCACGTCATGAAATTGGT
CAAACATTCTTCCATCATTCGTTTATATGAGGTGATGGAAACAGAAAGAT
ACATCTATTTAGCGATGGAATATGcatctagtggtgaaattttcGAATTG
CTTAAGAAAGAAGGGCGAAGGAATGAAACGCAAGCACGACACATGTTCAG
ACAAATTATTTCTGCTATGGAATACCTCCATCAAAAGCGTATTGTACATC
GTGATTTGAAGGCTGAAAATTTGCTGCTAGATGAGAATAACAGAGTGAAG
TTA Run BLAST on NCBI transcript from alignment at sc0000051:706524..713970+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005157 ID=TCONS_00005157|Name=TCONS_00005157|organism=Clytia hemisphaerica|type=transcript|length=7447bp|location=Sequence derived from alignment at sc0000051:706524..713970+ (Clytia hemisphaerica)
TGCGAATTTCTGCTGGATCCCATAAAAATAAGATGGCGGACAAAACCAAG
GTCCCTCATAAaagtaaagtaataaaaattgggtcTTATCATGTTGGAAA
GACAATTGGGAAAGGCATGTTCGCCGTCGTTAAGATGGCCGAGCATCATC
AAGCAAAAGCAAAGGTATAATTTTTTCCAGACTTTTTTGTCTGATAAAAA
TCAGTGGAAAATTTGACGACCCGTACCAAATCTGCAAATCTGTAGCTACC
AGAACCAGACGCACCTAGATGCACCACCAGCCTGATTCATTCACGTCAGG
TTGAGTGGTTTAGATTGACCAGTGGTAATGAGTTTTCTCATTTGACACTG
GAAATTTCCTGTCTGGTGCTTCCTTAAGTCTGGTGCAAGTAAGTAGGAAG
GGCAGGCAGGGTCGTAAAAATTGCAGCTGtaatattttgttgaaaaatat
tcaaagcCTGCTAAAAAAGATAAACCATGGAGGCAAGCTttgaaatgaat
gtttgatTACCCACTTAATCAACTCAATCAAACTTTTAATCGGACGATAG
GTGTTTGTTTATACGGAACGAAATCGAACGGTAATATCGAACCAAGAAAT
TTCTGTAAAATTGGATGACTGTTCGGTTGATCTTTTAAAGTTTAATAGCA
ATTCAATTATAGTTTGATAGGTTCGATCGTAGCTAGACATTCATTCAATA
AGCTTCTCGCTCTTTTCTAGGCCCTTTTTGCAATATCTTTGCTAGTACGA
AGCTCGACATGGCccgcccgagaattctcgggcctctacgggccatgttc
gggccgagagaccctatcaattcttttggcccgaacatgacccgagtcat
tcaggccatgttcgggccatgttaaatgttaaattgattcagcatgtcca
gtcaaacaaaatagtacaaaataagatttgtctgttttgtttatatcgct
caaaaaaactttacgagcttcccgtggacacacTTCAGTTTAAAActagg
accagtttactagcaaatatttccaccctaggTATATCTATAACTATGTT
Ttaataccaaataagacatttaatatttatatgaatttacaacattcata
tatttaatataattaagagaaaccaagtttttctcaaagaaaatgttaaa
aaaattcagtcctgaaattacacgcctgtttaaatcatgttttcaaaaat
ggccagctcgggccatactcgggctttacgcgaatttcaataaaagtttt
ggcccgagaattctcaggCCATGTGGAGGGTCGTTTGCTAGTATATCtga
gaaaaatagcaaaatgatTCCGGAAAAGCACCAAGATACTACTCTTGAAC
ACTCATCCACCAACTCGAGCATACATCAAACAACAAGGAACTGTATTTTT
AATGGAACTTATTTTAAACTAATCAATATATTTTCCtttaaagttcgatt
actgttcgatttggtttggtAGTCTAACACTTATCGTTTGATTAAGTTCA
ATCGAGTTCAATGGTTTGATTAAGAAAATtggttcgatagggttcggtcG
ACATCCCCTGATCAATGAAGTGCTTTTTAGACTCAATTTAACAAACAAGG
TCCTTTTTGAAGCAATCTTTCAGCAAGAAAAATAAGAAGTCTTACACACA
GTTAGTCATACTAGCATTCTGCTGAAATGCGTATTAATTGTGAGTTAGTC
ACACTAAAGTTTCGACGAAATACATATCAAAGATTGACTCACAAGCAAAA
GAATGCACTGCAAAACTTCTTGAgagatttatgaaaaaataaacagaCAC
TAAATAAACATTTCCTTTCCAAAAAGCTAAGAGAAATTACCTAGCAGATT
ACCTAAATATTGAGTCATAGATTACAAAATTTGACCCATGTCAACCTGGA
AAactaccataagttggtctaatgttgacattcCTCCTATAATTTCAACA
TCCTTTTTTAGAGATGGGGGAATAGCTAATaagaaggtcagaatcactga
tggaCTCCTCAATTATTGATTGCTGACCAAAGAAAATaagtttcaatcag
cgattctgaccttctatttattcatatctctaaagaaagtgatgaaatta
gaagagggatgtcaacattagaccaataCGGTAATTTgaagaacaaagaa
aaagatcaacAGTGGAGAAGAAACCAAACTAGATCTGCGCACTACATTTG
TAAATGGAGTAAAAAACAAAAGTGTTAATAAGGAAAAagtattgcaataa
aaaaagattaagGTTAAAAAACCTGGCTCTCGGAAGGAAAAAGATTTCAT
CCCTTTTCGAGATtcccaaaaaagattttcaaaaaagattccCCAGCAGA
AAGGGAGAGGAACAGGGAGGAAACTATAAAATCGTTAATAATACCACCAA
GCTTCCTTATACAGACAATAAATCTTCTGTCCTAACCCCAGACAATGATC
CGTGTAACTTTTCCCATTTTAGGTATCTTGCAAAGTACCCTTGCCctgtt
tttatattttagttGTAGATTAcattatatttttgttaataaaaTTTCCC
ATCGTAGTTTTCTTCTTAAATATAAACTTGGACCTCATAACCCAGATATT
CATCTCACTGGTAATAAAGATTTGCTGATGATGTAATTCTtgctacagta
tgtggcccccaaaacgtcgatcaaatttgaaacttctctcaaatctagag
gaaaagaagttttacaaaaatttttgctgcatgaaaaacttcatcgctac
tttatttcccggaagttctttttcaaaattttcaatttcaacaatatttt
tcaatcgcttaaagataggtagcttttttctaagggcccccaaaacggca
ggtttgcaattttagcgatttctcgagatatcttcaagatatgaatacaa
aattttgaccatagtttggaaatggaatttagagggttttgggcataaat
ttgtttgataaaatttttacagtatgcCCCTGGTTGTTAAAACGCAGGTT
TGGGCCCCCAAAACgcaggtgtagttaaaatcaaattattaagcccagtg
gtaaaagggggagaaactatgaacatatttgttttcatgttttccattat
atttacgacccgatgcatgtaaaatttaagatttttataaaatatttcaa
gattttcgatgatgcaaagtccaaactgaaaatttagaaattttcaaaat
gacaattttgatttaacaacgtattaatcaagtttttgaaaacaaatttc
ttttgaatatagtttcattcatgtatggaatttGCTGTGAAAATcttaga
aaaacagcttaactgaagctgaaaatattaaaagctaaaaggtatttttc
tcctacattttgcaaaaaatgacaaaatttgccgtttttgctgattccgC
GAACATttttataccttaagggaagaaattttcgcgagaagaaattttcg
cggaatttaatttcgcgaatcagagtttcaaaatggcaaatttcgcggaa
tttaatttcgcaaatgagccgatttcaaaagtttcacggaatttaatttc
gcgattgagaagaagttatcaacttagattaacttttaagcatcacggag
ttgcttatatttgtttatatttgataaaagatacacgttataatgtgtta
taaatcaattgtgtccatcttttttggtaacatctggtcaaaaacaacaa
aataaaagaagaagaaaaaaaatccaatttcgcggaatttaatttcacaa
tttaacaattttggtgtgtttcgcggaatttaatttcgcgaattgcgccc
caattcgcgaaattaaattccgcgaaaatttcttccgcaaaaatttcttc
tcgcgaaaatttcttcccttaaggtatgtaatattaattttttgctataa
actattatttcaagctgataggaatggaattccaagattttttgctgttt
ctcatatttagaattttccgttttatcaatgctgattgtAGTGCcgcaaa
atactggttgacctttaagatgctatatcttttacccatcgtctaaagtc
acagatgtatctgaattttctgaacggcattaggtgtagaaagtttccta
taccccattttcataacttattttcaatatccaagtagctagagtgagtt
atatgcaatttttatctaattttggtgttaaaatatttccttcagacgca
agtatgttattttgaatctgtctggaaccatcaaaaacatgttcattttt
aagtataaccatcattctttcaaaataaacaaaaatcgtttaattcttaT
AAATCTACAAGTGAGAATCCTCGTTTTAATGatgacctccgttttggggg
ctgTCTCTGTTTTGGGGGCTATATACTGTAGTCAGTTCTAGTTTTTGCAG
ACACAAAAACTTATATTACACTTAAATCAGCTACAGATTGCTAAGGGTTA
TATCTCAACGTTTCCCAAAACTaaatttttcagtattttccAGTGAGTAT
TTTTTCCAGAAGTCTCAAAACTGTTTCGCTTCGGGTATCAAATTAAAGAA
GGTTGAGGTTGACAATTacaaataccttaaaggaagaaatttttgcggaa
agaaaatttggcggaaagaaaatttggcggatttggcagaTTTAGCCAAA
ATCCACCGAATTaaagttcctgccaaaatttattttttcctccatccgcc
aagttaaattcccaccaaatttaTCTTATTTTACGCATTCCCCAAATTGG
Tgcaatttcaggccttaaagcaggtttttttgcttatttgataacgattt
tggccaaaaatatctttcaaccgccaaatcaaattcccttcaaatttgat
ttttccagccatccgccaaattaaattccctctgaaaaatttttttcggc
catccgccaaattaaattctcgctaaaatttcttccgtTAAGGTACCCAA
AGACACCTACATTCCATCatctaaaaaaagattttaagattgcaaagcat
cttctttttcaatttttttaatttctaattttcactttcattttcatgct
tttttgtaattttatgaACCCAAATTGATAATTTaaataaccttttttgc
ctCTAACAAGTCAATGTAAAAGCcctattattatatacctgtaggcaaaa
acagccattgaataattcctgatataccatggctattataccacggtaga
actttcttttcaaattttgcattcaaagtttgatttttttgtcgctcttg
ttgttatcaaagaaattcattaaaaaatctaTTGTGAATTTCATGAACaa
ttttatgactcaaagtaattaagaaaatctttaaaaaagaaaaacattcg
aacgttcgattatgggagtgttttatgtGAAACGTTCGACTATTgacaca
aaaattaatgttttgtttttgcctctaggtatgtaataaaacatatattc
aataggttttcgttggttatggatttattaaccctcggtaatgaatattc
aactcggctgcgcctcgttgaatattacatcacctcgggttaataaatct
caataaccaacttttacccattgaatatctgcttattattcCACTGTTTT
TCCTGttatgatttttatttattcacCAACATTTAGGAGTTTTTTCATGC
ACCTGCAATAAGATTTTCAAGTTAAAATCCAGGAACACGTCATCTAGATC
AACATTCACTgggtttagtttagtttttagttttagtttcaTCTCTAGCC
CCTATGGGGTTTTAAAGTCAATGGTAGCATTAGATTCTGCTCTCTTGTCA
GAGTAAACCAAAGGGAAAATCAGCTCAGGAAAGTCCAGGAAACGCTGGAT
GAGAACAGAACAATTACAATTGCCTTACCTTGAATTACAATTGTGAAATA
AATCCTGATGTAATAGCTGATAAACTTTTCAAATACCAATTTCcacttaa
aatctcaaaattaggtCAGCTTTACGGTCCATGGGTTTATATCCATGATC
CTGGCCCCTCATCTTGAATCAATATATAATTCAAGATAGCTAGGGAGGGT
ATTTTTTGCCAGCTAAAATGTCAATTAAAGATCATCAATTTACTTACTGc
catggcatggaccaggggtttaggtaccccctaagaaaataggtaccccc
tgaattttaggtacccccaaacaacagacgttattaggtaccccctgtga
ttggtaccccctgtgacttgagtatatgtcaagaaattgtatatttttac
aattaaaaagaataatgatagttagataaaagcaagataaaatatagttc
ccaaTCCCCCAGATCTTACTgcataaaagttagataccccagagatcata
ggtaccccctgaaattaaaaaaaaacagtccCTAGCcttttcaggaagat
tttggttgtagtcccccctgcgggctggggggggggttcatgccaTGTTA
CTCTTTTGTTCATTCAATATTCTAGATATtcaattttgcatttttaactt
taacattttttaatgttcTGGAGGAGGTTTTCTGGCCATTCTGTAAAATG
CACTTCATTTCTCatcttcgttttcaaaatttcaaaatatttcatagGCT
TTTTAAAATTAACCCATTTTCAAGTGCCACTGGTATCATATGAAATTCCA
GTTGTGTAATGGTTGATCGTGACTATtatctaaaaaatgatttttatttg
tttgCAGGTGGCCATCAAGATGATCGATAAAAGCCAGCTGGACGAAGAGA
ACCTGGCCAAAATTCGTCGAGAGGTTCACGTCATGAAATTGGTCAAACAT
TCTTCCATCATTCGTTTATATGAGGTAACCTCATCATTATTTTCGAAATG
TAGGCCATGATGTTTTTAAACAAATACCTTGGACCATACCAAAGGTTtca
ttttacaactttttaagTCAGCAGTGAGGTTTCCGATGTCTGTCAtccac
aaaaaagtttgcttccctttaaagaagtttttattatcaatttgTATTTT
AGGTGATGGAAACAGAAAGATACATCTATTTAGCGATGGAATATGcatct
agtggtgaaattttcGAATTGCTTAAGAAAGAAGGGCGAAGGAATGAAAC
GCAAGCACGACACATGTTCAGACAAATTATTTCTGCTATGGAATACCTCC
ATCAAAAGCGTATTGTACATCGTGATTTGAAGGTAAGCAATTCTCATTAA
TGACCCTAACAGTTTCTTGGTCTGAAGATGGAAATTGGTCCTGTCTGGTC
CAGTTTGAATTGGGAATTAGCTTCTTCGTCTCCATAAAATATATAACCAA
GGATTATTAGCAAAATAGAAAAttgttgtataattttaaatactttttta
tcatAACATTGATTAGTAGAAGTATTTATTCATGGatcttgttttttttc
cacAGGCTGAAAATTTGCTGCTAGATGAGAATAACAGAGTGAAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005157-exon-sc0000051-1491911889:706524..706687 | TCONS_00005157-exon-sc0000051-1491911889:706524..706687 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1510915933:706524..706687 | TCONS_00005157-exon-sc0000051-1510915933:706524..706687 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1575043694:706524..706687 | TCONS_00005157-exon-sc0000051-1575043694:706524..706687 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1491911889:713231..713347 | TCONS_00005157-exon-sc0000051-1491911889:713231..713347 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1510915933:713231..713347 | TCONS_00005157-exon-sc0000051-1510915933:713231..713347 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1575043694:713231..713347 | TCONS_00005157-exon-sc0000051-1575043694:713231..713347 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1491911889:713526..713705 | TCONS_00005157-exon-sc0000051-1491911889:713526..713705 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1510915933:713526..713705 | TCONS_00005157-exon-sc0000051-1510915933:713526..713705 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1575043694:713526..713705 | TCONS_00005157-exon-sc0000051-1575043694:713526..713705 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1491911889:713929..713970 | TCONS_00005157-exon-sc0000051-1491911889:713929..713970 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1510915933:713929..713970 | TCONS_00005157-exon-sc0000051-1510915933:713929..713970 | Clytia hemisphaerica | exon |
| TCONS_00005157-exon-sc0000051-1575043694:713929..713970 | TCONS_00005157-exon-sc0000051-1575043694:713929..713970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:706524..713970 + |
Blast
BLAST of TCONS_00005157 vs. Swiss-Prot (Human)
Match: SIK3 (Serine/threonine-protein kinase SIK3 OS=Homo sapiens GN=SIK3 PE=1 SV=3) HSP 1 Score: 178.718 bits (452), Expect = 2.042e-51 Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 3
Query: 75 KIGSYHVGKTIGKGMFAVVKMAEHHQAKAKVAIKMIDKSQLDEENLAKIRREVHVMKLVKHSSIIRLYEVMETERYIYLAMEYASSGEIFELLKKEGRRNETQARHMFRQIISAMEYLHQKRIVHRDLKAENLLLDENNRVKL 503
+IG Y + +TIGKG FAVVK A H KAKVAIK+IDK+QLDEENL KI REV +MK++ H IIRLY+VMETER IYL EYAS GEIF+ L GR E +AR F+QI++A+ + H + IVHRDLKAENLLLD N +K+
Sbjct: 4 RIGYYEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKI 146
The following BLAST results are available for this feature:
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