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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005174 ID=TCONS_00005174|Name=TCONS_00005174|organism=Clytia hemisphaerica|type=transcript|length=2634bp
tacttttcaaaatcaaaacctttATTATTAATGAATAGCGATTCAATCAT
TTCGATATTATTTCACTATCTATCTAAATCTTTATAAATATTAATTTACA
TACGttgtaaaatcaaaaaatcacatttacaAGCAGCTAGAGCTCGTGTC
TTTCTCCAAAGTTCACCTGTATAAGTTTAAGCCATACTGATATTCCTGGA
ACATAGAGCCCATAATTTCTATCCAGCAAAATTCACAGTCTTCTCCGCTT
TAATAAAGTCACGCATACCTCTTACTGAACTGAGTCTGAGGATTTCCTTT
AGTTATTCAAGCCATAAAAAGCTCATAGTCAATGTCACTAAGTCAATGTC
ACGAGCATTGGAATTAAAAGTCTACATTAATCTCTACTTAGCAGCTTTTT
TCCGGGTTTTGGTGACTGTtccattttttttatcatttgagGTTGTGGGT
TTTCGATTTCTCAAAGAACCAGCGTTTTCTCCTTTCCCATCGACATCATT
TTTAGTATCTTTGGACTCACCTCCTTTCTTACCAGGGCGAGGGCTTCGTT
TCTCTTTGTTTACATTCTTTTCTTTTGGTGCCAGGGAGTTCTCAATACCC
ACTGTTTTCATCATAGTACTCGATGCTGTGCTTTCCACGGTCTTACTTCC
ACTTTTTTCGGTACTGCTAGCGGTTTTACTCTCACTTTTTGTATCGGTGT
TTTCTGCACCGGTTTGCTCAACACTGTCGACAGCGTTTTTATTTCCGATA
TTTGGTTTCTTGCtaatctttttcttctttttgatggAAACTTTCGAACT
TTTCGTCACGACATCTTCAACATCAGCCTGTGCTCCATCCGCGACATCAT
CTCCATTAGACTGTGCAGTTTCCGCCTCGGAAACTTTCTCTTCGCCTCGG
TCCTTAACAGCCTCAGCATCAGCGATATCATTCAACGCCCTCTTAATGGC
GGCTTGGTTCAAAGTGGACAATCTTTTTGGGGTCAGTAGGCGTTCACTAA
CCGCCCATAATTTACGCCCAACTTCATCCTCGAGCTCGGGGAAAGTTTCT
TCTTTACAGTCTTTGAAATATTTACCAGAAACTTTTTCTAAACCACGATC
TAAAGCGCAATAATAGGCTGTTTCGGCCGCCATACTCGAGCTCTTCCAAA
ACAGATAAGAATAAGGTGAGATGAGGAACCAGGTTATGAACCAGTTATAA
GGAAAGATATCTTTCCACAAACTAGTGACGGCCGTCCCTGGGTTCACCAC
GTTCACTGTTACTCCCGAATCTTTGAAGACTTTTGCAAGCTCTTTGGTGA
AATACATCTTGGCCAGGTTGGCGTTGCGATAGGCGGTTGTATTACTATAG
CCTTTCAATCcttgaagatttttgaaatccAGGTCGCCTTTCTTGAAGTC
ATCTGACACGACATTTATGACACGACAAGGTGTATTCTCTTTCATGTTTT
GACTCAATAACTTGGTCAAATAAAAATGTCCGAGATAATTCACTTGGAAA
GTTTTTTCTAACCCATCCTCCGTTTCTTCTCTTTTTCGGCTGCCGTAGAT
TCCGGCATTATTAATCAAGACGTCGGTTTTCGGGAATTCttctttgatga
cgtcagcgaATTCATGAATAGAAACGAGCGAGGTCAAATCAAGTTTGCGA
ACTTCGATCAACTTCTGACCCGTTTGATTACGTAAATCTTTGGCGACttt
gaaaccttttttcaaaTTACGGCAGCCGATGACAACCTTCGCACCCCGTA
ACGCTAAATGAAAAGCTGTATCCAACCCTATGCCTGAGGTCGCTCCCGTT
ATGACGACAAGCTTATCTTTCATGGTACCTTTGGATAAGCACACTCCACC
CGTATTCATAAGACGGATGATGGTCACAACAATAGCTGTTGCAATGAACC
CAATAAACAGATAAACCAAAAGGATAGTTCGTTCTGTTGAAGCATGTACG
CTACGTAAGATCTCATCCTCATCAGGTGTCCGGCATAATCCACAAGCATC
CGGGCACTTTTTCCGGAGGTTTTGATCTTTGAAGCAGTTTCCGGTAGCTC
CCCATTGTTTACAACGTTTGTCCGTATCCCTGCATTCTTTACTTTCGGTC
CAACTGGCAAAAAGAGCGAGAACTGAGATAAATAACNTTCTTTACTTTCG
GTCCAACTGACAAAAAGAGCGAGAACTGAGATAAATAACAACCCTTTGAG
GAGCATCTTGCCATCCAAATATTGTCTCTTTAAGTACCAGATCAACGTtt
ctttaaaaagttatttgaaatatttgatgaaaatgtacttgttttttgtt
ttcagtgtttttcagcaaGTTGGTTATCGAGAGATGCAATCCAATGTAAc
gaaaaatatgttaaaatgTCGTTTGTATATTCATCTGcaacgaaatcatc
aaaacctttttttaaactAGCCAACCAGCGATAGAGACGTAGCAATCTTT
CTCGAAGGCGTGAGAAAGTGGAAGGTCATCTTCTTCACCATCACTCTTTC
CCTCAATAAACAATCAATTTGTGTTACAGCAATGGAAATGAAtacgaaaa
tgaagaagaaaaacctCATAAATGACGATCATGAAAAAGAgaaattaata
aatttttcaacaatttttgaatGGAATCGAAGAT Run BLAST on NCBI transcript from alignment at sc0000051:54159..56858- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005174 ID=TCONS_00005174|Name=TCONS_00005174|organism=Clytia hemisphaerica|type=transcript|length=2700bp|location=Sequence derived from alignment at sc0000051:54159..56858- (Clytia hemisphaerica)
TACTTTTCAAAATCAAAACCTTTATTATTAATGAATAGCGATTCAATCAT
TTCGATATTATTTCACTATCTATCTAAATCTTTATAAATATTAATTTACA
TACGTTGTAAAATCAAAAAATCACATTTACAAGCAGCTAGAGCTCGTGTC
TTTCTCCAAAGTTCACCTGTATAAGTTTAAGCCATACTGATATTCCTGGA
ACATAGAGCCCATAATTTCTATCCAGCAAAATTCACAGTCTTCTCCGCTT
TAATAAAGTCACGCATACCTCTTACTGAACTGAGTCTGAGGATTTCCTTT
AGTTATTCAAGCCATAAAAAGCTCATAGTCAATGTCACTAAGTCAATGTC
ACGAGCATTGGAATTAAAAGTCTACATTAATCTCTACTTAGCAGCTTTTT
TCCGGGTTTTGGTGACTGTTCCATTTTTTTTATCATTTGAGGTTGTGGGT
TTTCGATTTCTCAAAGAACCAGCGTTTTCTCNAGTTCCATTTTTTTTATC
ATTGGAGGTTGTGGGTTTTCGATTTCTCAAAGAACCAGCGTTTTCTCCTT
TCCCATCGACATCATTTTTAGTATCTTTGGACTCACCTCCTTTCTTACCA
GGGCGAGGGCTTCGTTTCTCTTTGTTTACATTCTTTTCTTTTGGTGCCAG
GGAGTTCTCAATACCCACTGTTTTCATCATAGTACTCGATGCTGTGCTTT
CCACGGTCTTACTTCCACTTTTTTCGGTACTGCTAGCGGTTTTACTCTCA
CTTTTTGTATCGGTGTTTTCTGCACCGGTTTGCTCAACACTGTCGACAGC
GTTTTTATTTCCGATATTTGGTTTCTTGCTAATCTTTTTCTTCTTTTTGA
TGGAAACTTTCGAACTTTTCGTCACGACATCTTCAACATCAGCCTGTGCT
CCATCCGCGACATCATCTCCATTAGACTGTGCAGTTTCCGCCTCGGAAAC
TTTCTCTTCGCCTCGGTCCTTAACAGCCTCAGCATCAGCGATATCATTCA
ACGCCCTCTTAATGGCGGCTTGGTTCAAAGTGGACAATCTTTTTGGGGTC
AGTAGGCGTTCACTAACCGCCCATAATTTACGCCCAACTTCATCCTCGAG
CTCGGGGAAAGTTTCTTCTTTACAGTCTTTGAAATATTTACCAGAAACTT
TTTCTAAACCACGATCTAAAGCGCAATAATAGGCTGTTTCGGCCGCCATA
CTCGAGCTCTTCCAAAACAGATAAGAATAAGGTGAGATGAGGAACCAGGT
TATGAACCAGTTATAAGGAAAGATATCTTTCCACAAACTAGTGACGGCCG
TCCCTGGGTTCACCACGTTCACTGTTACTCCCGAATCTTTGAAGACTTTT
GCAAGCTCTTTGGTGAAATACATCTTGGCCAGGTTGGCGTTGCGATAGGC
GGTTGTATTACTATAGCCTTTCAATCCTTGAAGATTTTTGAAATCCAGGT
CGCCTTTCTTGAAGTCATCTGACACGACATTTATGACACGACAAGGTGTA
TTCTCTTTCATGTTTTGACTCAATAACTTGGTCAAATAAAAATGTCCGAG
ATAATTCACTTGGAAAGTTTTTTCTAACCCATCCTCCGTTTCTTCTCTTT
TTCGGCTGCCGTAGATTCCGGCATTATTAATCAAGACGTCGGTTTTCGGG
AATTCTTCTTTGATGACGTCAGCGAATTCATGAATAGAAACGAGCGAGGT
CAAATCAAGTTTGCGAACTTCGATCAACTTCTGACCCGTTTGATTACGTA
AATCTTTGGCGACTTTGAAACCTTTTTTCAAATTACGGCAGCCGATGACA
ACCTTCGCACCCCGTAACGCTAAATGAAAAGCTGTATCCAACCCTATGCC
TGAGGTCGCTCCCGTTATGACGACAAGCTTATCTTTCATGGTACCTTTGG
ATAAGCACACTCCACCCGTATTCATAAGACGGATGATGGTCACAACAATA
GCTGTTGCAATGAACCCAATAAACAGATAAACCAAAAGGATAGTTCGTTC
TGTTGAAGCATGTACGCTACGTAAGATCTCATCCTCATCAGGTGTCCGGC
ATAATCCACAAGCATCCGGGCACTTTTTCCGGAGGTTTTGATCTTTGAAG
CAGTTTCCGGTAGCTCCCCATTGTTTACAACGTTTGTCCGTATCCCTGCA
TTCTTTACTTTCGGTCCAACTGGCAAAAAGAGCGAGAACTGAGATAAATA
ACNTTCTTTACTTTCGGTCCAACTGACAAAAAGAGCGAGAACTGAGATAA
ATAACAACCCTTTGAGGAGCATCTTGCCATCCAAATATTGTCTCTTTAAG
TACCAGATCAACGTTTCTTTAAAAAGTTATTTGAAATATTTGATGAAAAT
GTACTTGTTTTTTGTTTTCAGTGTTTTTCAGCAAGTTGGTTATCGAGAGA
TGCAATCCAATGTAACGAAAAATATGTTAAAATGTCGTTTGTATATTCAT
CTGCAACGAAATCATCAAAACCTTTTTTTAAACTAGCCAACCAGCGATAG
AGACGTAGCAATCTTTCTCGAAGGCGTGAGAAAGTGGAAGGTCATCTTCT
TCACCATCACTCTTTCCCTCAATAAACAATCAATTTGTGTTACAGCAATG
GAAATGAATACGAAAATGAAGAAGAAAAACCTCATAAATGACGATCATGA
AAAAGAGAAATTAATAAATTTTTCAACAATTTTTGAATGGAATCGAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005174-exon-sc0000051-1575043694:56418..56858 | TCONS_00005174-exon-sc0000051-1575043694:56418..56858 | Clytia hemisphaerica | exon |
| TCONS_00005174-exon-sc0000051-1575043694:54159..56351 | TCONS_00005174-exon-sc0000051-1575043694:54159..56351 | Clytia hemisphaerica | exon |
| TCONS_00005174-exon-sc0000051-1510915933:56418..56858 | TCONS_00005174-exon-sc0000051-1510915933:56418..56858 | Clytia hemisphaerica | exon |
| TCONS_00005174-exon-sc0000051-1510915933:54159..56351 | TCONS_00005174-exon-sc0000051-1510915933:54159..56351 | Clytia hemisphaerica | exon |
| TCONS_00005174-exon-sc0000051-1491911889:56418..56858 | TCONS_00005174-exon-sc0000051-1491911889:56418..56858 | Clytia hemisphaerica | exon |
| TCONS_00005174-exon-sc0000051-1491911889:54159..56351 | TCONS_00005174-exon-sc0000051-1491911889:54159..56351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:54159..56858 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00005174 vs. Swiss-Prot (Human)
Match: RDH13 (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 1.863e-61 Identity = 132/316 (41.77%), Postives = 182/316 (57.59%), Query Frame = -2
Query: 984 LLVYLFIGFIATAIVVTIIRLMNTGGVCLSKGTMKDKLVVITGATSGIGLDTAFHLALRGAKVVIGCRNLKKGFKVAKDLRNQTGQKLIEVRKLDLTSLVSIHEFADVIKEEFPKTDVLINNAGIYGSRKREETEDGLEKTFQVNYLGHFYLTKLLSQNMKENTPCRVINVVSDDFKKGDLDFKNLQ-GLKGYSNTTAYRNANLAKMYFTKELAKVFKDSGVTVNVVNPGTAVTSLWKDIFPYNWFITWFLISPYSYLFWKSSSMAAETAYYCALDRGLEKVSGKYFKDCKEET-FPELED-EVGRKLWAVSERLL 1922
LL +G +A A V +++ TGG C SK T+ K V++TGA +GIG TA LA RG +++ CR+++K AKD+R +T + R LDL SL SI EFA I EE + D+LINNAG+ TEDG E F VN+LGHF LT LL +K + P R+IN+ S G +DF +L + Y+ AY + LA + FTKEL++ + SGVTVN ++PG A T L + + + + P +L KS +AA+ + Y A+ L VSGKYF K++ PE ED EV R+LWA S RL+
Sbjct: 5 LLPLSALGTVAGAAV--LLKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRC-PHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKLAIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLV 317
The following BLAST results are available for this feature:
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