TCONS_00005182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005182
Unique NameTCONS_00005182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005182 ID=TCONS_00005182|Name=TCONS_00005182|organism=Clytia hemisphaerica|type=transcript|length=1536bp
GACCAGGCTTCAAAGACTCTTGtttgttaagcaaaaaaaacgtgtttgaT
TTACTTATTATAATGGCTAGGAAATCTTCAGatttGCACCAAGCTGTGTT
ATCAAAAGAAGAGATGACGGTTTTCCAAGTCAGTGGTGCTCTTCAATCGC
ACGAGAGTTACATCCGCATCATGACAGCCATCAATCATGCCGGACTTGAG
CTCTACTTCAAAGCGTTCCATCACAGGGACGAACTACCCGGTGGTCTTGG
TCTTCCAACAGAACCGGAAAAACTTTACAAGCATCTACAAAAACATCAAT
CAGAATTTGACGACCTTCGCTCCAAAGGACAAATCACTGAAAGAGAGTAT
CTAACCATTTTCCCAGCTGGCAAGAAAGAGACTTATTCTCAGGAATTCTC
ATTCCcgcttttccaaaaattgttACAAATGTTTGACCGAGCAGGACTTG
ATGCGGAAACAGCAAACTCGGATGACGAGCGAAACGTATTTTTGCAAGAA
ATGTCGAAATTTGAATACATATTGAAAGATAAGAAACTGGTCAAAAAGAT
TAACAATTCTGATGAGACTTTCAATGAAATTTGGGATGACGTCATTCAGa
tcttgaaaaatgtcaaatatgatataacacgaatcgAATCCTTACGAACA
AGCGATCTAgaagaaaataataaattccGATTCGCTCTCTTAAAATCCGA
AGTCAACGCTTTATTGTGGGAATGTGATGATTGTTTCAAGACTGTCAAAA
TGAACCATCTAGCCTTGGATCGCCTCAAAGGGAACTTCCAGGCTGCACTC
TCTGAAGTCAAAACAGAAAATAACAACGCTAAAACAGCTAACGAGTTAAA
AGAACTGAATACAGTCACAGATGAActtcaaaaatctgaaaataaaatca
tGGTTCAAAAACAACAGCTAAACGAAATTGTTCCAAAtattaaattttgg
cgggaaaagAACATTGaaggtgacgtcatcatttgtgACGAGAACATTTC
GAAATTGAGACATGAAGTAAATGAACAGACCAGACGAGTCGGTGATTTGT
TCAACACCGTATCTTTCGATATCATTCACCTGAAGGAGCGAGCATACAGT
GCGACTGGAGAAGCTAAAAACATCGGACTTCCTTTACATAAATCGCATTG
AGTTTTGCGActgtttcagatttttttttttgtacataTTATTAAGGTCT
ATTATctttatatttattattttaatgcaagttttatttttaatttgttc
tagGTCTTTCAATTGATTATTCCGAAATTGATGCTGAATATTTTGGGAAC
TTTTTTGGATTGACCGGTTGAACCTTTAGTCTTTTGCTTTAttgatttca
gaaaaaaataaaagatagaGAATTTTGTATAGATTTCACTGGCGTGTCAT
TTCATTGAGTTACTTTAAACAACACTTCTacgcgtttttttttattagaa
cctagtttataagaacatataggctgaaattcgtcgaaaaattaagaaca
tcttaagaacatgcccagcctcagtttggaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000051:108262..112896-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005182 ID=TCONS_00005182|Name=TCONS_00005182|organism=Clytia hemisphaerica|type=transcript|length=4635bp|location=Sequence derived from alignment at sc0000051:108262..112896- (Clytia hemisphaerica)
GACCAGGCTTCAAAGACTCTTGTTTGTTAAGCAAAAAAAACGTGTTTGAT
TTACTTATTATAATGGCTAGGAAATCTTCAGGTAATAACATGAAACTAGT
ATTATACATGTTTTCGTATACTAATGAAAAATATCTGGTAAAAGTCTTGT
ATTACAGTTTGGTGAAACTCTATCGTTTTACGAATTCATGTCTTTCGTGG
AAGTTTTGTGTTTCATTAGCTAGGAAAGAAATCTGTTGGTCACTGAGTAG
GGAAAATGCAAAAAACTCGGTATTCGCTGAGACGAGGTACAGTAACGATT
TCGACTATCGACAGCTCTAACGAAGTTCCAGTGAGACTGGGAAGATTAAG
ACTATCCGAATGAACACTTTCACTATAATAACTATTATCTTTGACTCTTT
TTTGAACCTTCAGTGCCTGCTTTTTAATGATTTTCCGACCCCTAGTCCCT
TCTAAAAACTAAACAAATATGCCCTCTTTGTATCCTTTGCTCTGAGCTTA
AAACTGTCTGTCTGTCTGTTTGAGCTTAAAAGTCTGGATCGTCGGTAGAG
ATACTAATGCTTTCTAGCTTCAAATCACTGGATTAAAATGATCAATTTGA
CCTCCTTGGCTTAGAGTTGTGTGAACATACAAAACGATGAATTCGTCTCT
TGACCGTTGTGTTTTGAAGTACACGTTTTTTTTTTTATTAGAACACCTAA
AATTTGGCTGAGCCTGGATGTGCTTATTTTTTTATCAATTTTCAGCCTAG
AATGTTCTTAAATGCGTTCTTAATTTTTCAGACTACTCTAAATCGACAAT
ATGATACAAAATAAAGAGCACTTAAATTTGGCAAAATATTTGACTCTCGA
CTTTTGAAGATCCACCCCTAAATTCAGTTAAAACTGCTTAAAAAGAGGAA
AAAATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTC
TTAAGATGTTCTTAATTTTTCGACNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
CCAAACTGAGGCTGGGCATGTTCTTAAGATGTTCTTAATTTTCGACGAAT
TTCAGCCTATATGTTCTTATAAACTAGGTTCTAATAAAAAAAAAAACGTG
TAAATCTTTCAGATGCTGATTCAGCTTTATCAATGGTTGCCATAGTAACA
CATTGATGACGTCATTATACAAGTTGATTTATGAGAGAATTTTAGTTTAA
ATATTTATGGAGAATAGTATACAAAAAGTTTTTAATTCAATTCAAAAATG
AATTCAAAAATGTTTTTATTGTAGATTTGAGAGTACTAAAACGGTTTTAT
TGAGGAAATCCACAACAGCTTCATAAAGAAGTTTGTATTTTTTGCGTTTT
GACTTTCCTGGCTTTTCGTGGAAGCACCTGAAAGATTTCGAGATAGAGTC
GTTTGCTGGGAGTGTTATATAGAATAATTGAGAGCGAAGCATCGAGGGTA
TGTTCACATCTTGTTCTCAATACTTTTGGTAATCTTTCAGTAAAGATAGT
ACTGTACACTACAAAATACAAATTCAATGTGCATAGATGATTTATAAAAG
GCCCCAGTACCAAATTACCTCATCTTCAGTAATTTTTATTCGTCCTCCCA
ATATACTTCTTCCCTTTGGAAATGTGAAAATAACAAATATCAGTTGATTG
GTCATTTCTATAGAAGTATATTGCGCTCTTGATGATATCGTGTTGTTATG
AATGAACTGTTCTAAGCACATCCCATTTCGACTATCTTCTAGTATTTTCT
CCCTCCTCCCTCTTTGACTGTAAGAACAAAATTTTTTCTGTTCAATATAA
TCAAGACTTTCATTGACAAGGTTCAGTTGGTTGTATGTGGTGATTAGTAC
ACGTTTTTTTTATAATAGAGCAAACTATACGAGAACATAAGGCTTTGTGG
ACTCAAAAACACCCGTTTTCTGAGCAAAATGGGTAAAAATGGTTACGAAA
TGGTGATTTTAAGAACATTTTTAGGCTTGAAACCCAAAAAGTCAAGAACA
TCCCAAAGCTTTAAAAAAACGTGTATTCCATGTCGAGTTGTATAAGTCCA
TTTATTCGAATATTTGTTACTTTTATTTTGGCAAACGAATATAAATGTAA
GAAACAAAAGATATCACAGTTTCTTATAAAAAACTTTCTTTGTATGTATA
TCCCACTTTCTTGTATAAACAGGACAATACTTCAAAGTTAATTACTTCCA
CCTTCGAAATAACTGAAATCAGCATTCTAAAAAACCTAATTGTCAATTAT
ACGTATATCGTTTTCATTAACAAAATTAACAGCATAAACGAGGCTATTAC
AAACTGACGTATTTGTAAACTTTTTTAATCTCTACCAATTTTGAACAGAG
CAGTTCATATCATCAATCTTAAGTCGGCGTGTGAGAGAAAGTTGATGTCA
AAATCTTTATTGGATTTTTGTTGTAAATCAGTTCAAGGCTTCACTCACTG
TGCTGAATTTTTGTTATGTTTTGAAATCAAGAGAAAGAGAAAGTTATTTC
ATGCTGAAAACTTGCTAAGAAACAGGAAAAGTTTTGCTGGTTATGTCAAA
ATTGCACTTTCCATTTAAGTTATGGTAATTGAAAGTTGTTGATGTCATTT
TAAATTCCTGGAAGAAAGAAATTTGGTGATACCCACAATAAGTGTTGTAT
TTTTGTCAGTAAGGTCAATACGTTGTTTTTTGTTTTCGGTGGTGGAACGG
TAGTTTAGTTTTGATGAGAAAAGTTGTGTACTTGACCTCTGTAAATCCTT
AAGGTGAGGTGTTTGGTACAAGCTCAATCAATATTTTTAAATTTCTTCCT
TCGCTTTTATTCCTTTAAGAGATAAATAACTCCTCTTGTATTATACATTT
GGGAAGTAAGCAATTCGATACATACACCCTGTAAGGGGTTATAACGTTGT
AAAACTCGAGCCTCTTCATGTCCATATTAAAGGAGTCGAATTATGGAAGA
TTTGCCGAATGATACTCTATAATTCGAACTTGAACGGGATATCTTATTTG
TTCGAATTACAGAGATATTCGGATAGTAGAAAGTTTCTCCTTGTGTCTGG
GACTGGGACATAAGTTCGAATAAGGGAGTCTACTGTCTACTGTATAAAAA
TGTCAAATTTTGTTGCTTTTTATTTTGTAGATTTGCACCAAGCTGTGTTA
TCAAAAGAAGAGATGACGGTTTTCCAAGTCAGTGGTGCTCTTCAATCGCA
CGAGAGTTACATCCGCATCATGACAGCCATCAATCATGCCGGACTTGAGC
TCTACTTCAAAGCGTTCCATCACAGGGACGAACTACCCGGTGGTCTTGGT
CTTCCAACAGAACCGGAAAAACTTTACAAGCATCTACAAAAACATCAATC
AGAATTTGACGACCTTCGCTCCAAAGGACAAATCACTGAAAGAGAGTATC
TAACCATTTTCCCAGCTGGCAAGAAAGAGACTTATTCTCAGGAATTCTCA
TTCCCGCTTTTCCAAAAATTGTTACAAATGTTTGACCGAGCAGGACTTGA
TGCGGAAACAGCAAACTCGGATGACGAGCGAAACGTATTTTTGCAAGAAA
TGTCGAAATTTGAATACATATTGAAAGATAAGAAACTGGTCAAAAAGATT
AACAATTCTGATGAGACTTTCAATGAAATTTGGGATGACGTCATTCAGAT
CTTGAAAAATGTCAAATATGATATAACACGAATCGAATCCTTACGAACAA
GCGATCTAGAAGAAAATAATAAATTCCGATTCGCTCTCTTAAAATCCGAA
GTCAACGCTTTATTGTGGGAATGTGATGATTGTTTCAAGACTGTCAAAAT
GAACCATCTAGCCTTGGATCGCCTCAAAGGGAACTTCCAGGCTGCACTCT
CTGAAGTCAAAACAGAAAATAACAACGCTAAAACAGCTAACGAGTTAAAA
GAACTGAATACAGTCACAGATGAACTTCAAAAATCTGAAAATAAAATCAT
GGTTCAAAAACAACAGCTAAACGAAATTGTTCCAAATATTAAATTTTGGC
GGGAAAAGAACATTGAAGGTGACGTCATCATTTGTGACGAGAACATTTCG
AAATTGAGACATGAAGTAAATGAACAGACCAGACGAGTCGGTGATTTGTT
CAACACCGTATCTTTCGATATCATTCACCTGAAGGAGCGAGCATACAGTG
CGACTGGAGAAGCTAAAAACATCGGACTTCCTTTACATAAATCGCATTGA
GTTTTGCGACTGTTTCAGATTTTTTTTTTTGTACATATTATTAAGGTCTA
TTATCTTTATATTTATTATTTTAATGCAAGTTTTATTTTTAATTTGTTCT
AGGTCTTTCAATTGATTATTCCGAAATTGATGCTGAATATTTTGGGAACT
TTTTTGGATTGACCGGTTGAACCTTTAGTCTTTTGCTTTATTGATTTCAG
AAAAAAATAAAAGATAGAGAATTTTGTATAGATTTCACTGGCGTGTCATT
TCATTGAGTTACTTTAAACAACACTTCTACGCGTTTTTTTTTATTAGAAC
CTAGTTTATAAGAACATATAGGCTGAAATTCGTCGAAAAATTAAGAACAT
CTTAAGAACATGCCCAGCCTCAGTTTGGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002949XLOC_002949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005182-exon-sc0000051-1575043694:112816..112896TCONS_00005182-exon-sc0000051-1575043694:112816..112896Clytia hemisphaericaexon
TCONS_00005182-exon-sc0000051-1575043694:108262..109716TCONS_00005182-exon-sc0000051-1575043694:108262..109716Clytia hemisphaericaexon
TCONS_00005182-exon-sc0000051-1510915933:112816..112896TCONS_00005182-exon-sc0000051-1510915933:112816..112896Clytia hemisphaericaexon
TCONS_00005182-exon-sc0000051-1510915933:108262..109716TCONS_00005182-exon-sc0000051-1510915933:108262..109716Clytia hemisphaericaexon
TCONS_00005182-exon-sc0000051-1491911889:112816..112896TCONS_00005182-exon-sc0000051-1491911889:112816..112896Clytia hemisphaericaexon
TCONS_00005182-exon-sc0000051-1491911889:108262..109716TCONS_00005182-exon-sc0000051-1491911889:108262..109716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:108262..112896 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.711752	0.00253133	1.33969	6.30816	1.03916e-09	0	6.09818e-08	0	5.74484	2.61005	3.18115	4.48164	10.5652	5.31002	6.07936	7.73233	3.54549	4.16564	2.40692	0.000360734	5.94924	6.81257	0.0246304	7.92216	2.30439e-07	2.91705e-05	5.98711	4.38348	4.04514	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top