TCONS_00005209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005209
Unique NameTCONS_00005209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005209 ID=TCONS_00005209|Name=TCONS_00005209|organism=Clytia hemisphaerica|type=transcript|length=453bp
GGAATTGGAACAGTTCTTTTGATTGAGTTCATCATCTTCATGGTGTACcg
ttattcaaaacaaagaaacaaagaTGCGAACCAAGatttgAGCTTGACCA
CTGTGAAtgCAAATCAAAATGCTGCAGATATCACTgATGACGAAGTTGCT
GCACCAGgAGACTTCCAAAGCAATGGAATGGATACAAGAACTCACGCACT
CTCTATTGTTAATGCAACATACATGTCGATAAAAAGGACAAAAGAAAAGT
CACTCTATGAAGTGTGAGAAATCACAAATGCTGAAGAGAGTGTTGTGTCA
ATAATCTCAACTCGAACTGGAAAATGAGATTGTTGTCAGCCAAATGATAG
TGATGATGGTTTCTGGTTGTTAAGAGCAACCTGGATACTCAGATTAAATT
AGTTTTTTGTTAGAAAAAGTCTTTTGAACTTAAATTTCCCTAGGACCAGT
GAC
Run BLAST on NCBI

transcript from alignment at sc0000051:440838..444897-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005209 ID=TCONS_00005209|Name=TCONS_00005209|organism=Clytia hemisphaerica|type=transcript|length=4060bp|location=Sequence derived from alignment at sc0000051:440838..444897- (Clytia hemisphaerica)
GGAATTGGAACAGTTCTTTTGATTGAGTTCATCATCTTCATGGTGTACCG
TTATTCAAAACAAAGAAACAAAGATGCGAACCAAGGTAAATGATTGATTT
GACTTCAAATTGATCCCAGTAGAAAGATAGCTTGCCTTTTTGCCCACATT
GAAAATCATTGCTTCTTGGACAATAAAATGAAAGTTTGCCGGCTGAATAA
AGCTGTAATCAATAGAAGTGGAAATTATAAGAATTTTTCCAATCCGCATT
TACATTTTTATATTTGCTATTTCAATTTGTCTTCACTTGCTAAAAAATCT
CTCAAGATATTATTTCCCCAGGAGGGGGGGGCTTAGGCAAATGGAGGGTA
CACAGTACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCGAGGA
CGAAAAATCGCGAAATTCACNNNNNNNNNNNNNNCCCGGGGGGGGGGGGG
GGGGCTTAGGCAAATGGAGGGTACACAGTATGTGCCATTCTTAAGGGTAC
CTTTTTTGGATTTCCAAATTTCCGCTAAAGGTCGGAAAAATCTTTCAATT
TCAATTTTTCCTTTGTTTTCTCCTTTTATTCCCGGTAAGGGGTCCAAAGT
TAGAAAGTCGGGCAGCATCCCCCCCTGTCAGCTCGCAACCCTAGTACCCA
CCCCCCCGGGATTATTTCTTTCAAATCAACAAGTAATCTTACAAACTTGA
TAGTGAAAGAAAACTGATAATTTCAAGATTTTGCGAATTTGATCATTTTC
TTTTTTCTTTTTCAGATTTGAGCTTGACCACTGTGAAGTAAGTGTGTACG
GTTGAAGTAACGTTTTTTTATAAAAATGGTGTTCTTTCATTTCATCTTAT
TCTTAACTTTTTTGGGAAAATCATTTAAAAATATTCTTGTGGTATTCTTA
GTTTACTGCAGTTGGGATCCAAATTCTTCCGTCACAGCATGTATTATATG
CCTGAAGCATAAAATGTAATTTTTGTGGAAATTTGAGCCTTACTTGAGAT
GATTAGCATTTACAGACAAAATGCTCTGAAAATGGCATTCTTAGGTTCTG
TTGCCAAACTCCACGATGATGGATGATGATATTGGTGTAAAACCATTTCA
TCATGGATATTCTTAACTTTTTTGGACATTCTTATAAAGTGTAATTCTGC
CCGTAGTGAGGTGGGTTACTTAGGCAAATGGGTGCTGGGTATATACAAGC
CATAAGGGTCCCAGTTTTGCACCCTCGAAAGTCCCTCAAGGGGGAACGTA
CAAAATACAAAATACAAAACCCATTAAAAAGCAAATTGAAACTCTGTAAG
GGTTCCAAAACTACGAAAATCAAAGGGTCATAAATTCTTGAAACGTCAAA
ACAGGACAAAATTTTCGAAATTCGGCGTCTCTAAGGAGTTGTCTTAGACA
TACCCCAGACATACCCGTCATCTCTCGAACCTAGTACCCCCTCCGAGATA
CCCTGTTTAATTCCCTATACGTTATCTCGATTTCGAAAACAACTTAGATT
TTTAACGTCCTTCTTTATTTATTTTAGTGCAAATCAAAATGCTGCAGATA
TCACTGTAAGTTAGTAGACGTTTTCATGAACTTATAGACTAGAAGCTCAA
CTCATTCGTGTCTTTTCGATGCGTACTTTCTTTCCTCAGACGGACTTAAA
TATCATTTTTATAGACGAAAATATCATAAGATGCTGGGAAATATTTTTTG
ATGGTCGGACTTATCTAAAACTCTTCATTTTCAAAATCGTGGGAAAATTG
ATGGTCGGAAATATCCCGAGCTTCTTTAAAAATGCCTTGTCAGAATATTA
TATAAACAAACATGGTAGAGAAGATACGAGATGAACAGAATTTCGTAAAG
CCTAGATTAGATTCCACTCCTGGCTAAACTTTGCTTTTTGATAATATTTG
TTGACGCTGAGTTCAGTGGAGTATGCTGCATAGTTACCCCCTTAGTTACT
TATCAGCGTTATCCAGTACAGTTTATCAAAAACCTCTAAGTTGCTTTCGT
AAAGCCCTAAGTGTCAAGGGATAGATAAGAGATACAGAGATACAGCAAGA
AGATCTAAAATTATGGTCGTAATATTTGAGAAAAAAGGGAAATTCCTACG
AAATCTTATAACCACAAACGATTTGGAAGTGCTCTAAATTAGGTTGGAAG
GGTAGAGTTTTAACACTAGACTAAAGGAGCTTAGGATCTAAAGATCGAAA
AGTTCAAAAATGGTCCAATAGGGCTCAGAATATAGCCTAGAAGTCTGTAA
ACCCCTCCCGAATTGAAATACGCGAATAAATTCATCAATTAGCCCAAAAG
TGACTTTCTCGCCCGAACTCCAAATTTCGAATAACAAAGAAATAAGCTAA
ATTGTCAATATATTTTGACCATGATTGTACTTTCCAAACAAATAACCCAT
GAGCATGAAGCTAGTTGAATTTCAAGTCAAGGAAATTTTAGGGGGGTTTT
ACAAAGTCTGTGACGAAGGAAAGGAAGCGCACAAGCAGGGTAAAGAGCTT
TTGCAAAGAAATGTCTTTTTTTTTTATCTTTACTTCAAGCATGAACATAT
AAACGACTGGACACCCATCTCCTTTGTATTTTTTAAGATAACACTGATAA
AGTGTATCCAGATATAATTGGCAGTGGAAACAAGTTTCCACTGCCAATAG
ACGATATCGGCTTTCGATAAATGCAATGCATTCTGGTTTCTAGGGACTCT
CAAAGGAATTATAATAGATCAATTATAATAGATTATAACTCCTTTGAGAG
TCCCTAGAAACCAGAATGCATTGCATTTATCGAAAGCCGATATCGTCTAT
TGGCAGTGGAAACAAGAATGTCTGTAACTTTTGATAGTCCGATATAATTG
CGAAAATTTATTTTGCTTGTCTTAGAGAATCAGAAGAACTAACTTTTTTG
GATGATCAATTAAGTCCATAAGATCACAAAAACGAGTGGTGAGAAAATTT
CGACCATTTTGCTGGTCCCCATGTATTGAACGACCATAGTCCTTAGGCGG
AGCGAGATACCCTGCAAAATTTATGGATGAGAGCGGTTTTTACGACACTA
TAATTTTTGTCTTTGTTTTATCAAAAAATAATGAATATGATATAAACGTC
TGCACTCCCTCATAAATTTTGCAGGGTATCTCGCTACGTCTATGAACGAG
ACAGCAAAAATATTCAAATCTGAACGAAAACATTCTCTACCACGTTTGTT
TATAAAAAATGCTGACAAAGCATATTTAAAGAAGCTCCGGATATTTTCAA
CTATCAATTTTCCCACGATTTTGAAAACAATCAAAGGTTTTAGATATGTC
CGACCATCAAAAGATATATCTGACCATCTTATGATATTTCCGACCATAAA
AATGATATTTCCGACCATTACGCAAGGATATTCCTGACCATCAAAGTTAT
TTCCGTCCGTTTAAGGAAAAAAATACGCCTCTTCGACATGCCTTCGTAAT
CTCCTCTTGAATCAACTTTGAATATTTTCAATATCTCAAATTAATCATTG
AAAGTTTTTCGATTCCAAGGATTAAACATTTGTTTTTCTTTTTGTTCAGG
ATGACGAAGTTGCTGCACCAGGTCATTTTTCGTTAATTTACGTCATCCTT
TCTATTGCTTTCCAATCCTTAAGGTTAAGAGCAGATATAATGAGGAGAAA
ATGACTTTTGCAACAGTGATTAAATTTCAGGATATTTTTTTCCTTGAGGA
TGATTTTCCAGTCAGACTTTCAGTGGTCCAAAGTGTTTCAAATCACCCAT
TTGATTGTTTTCAGGAGACTTCCAAAGCAATGGAATGGATACAAGAACTC
ACGCACTCTCTATTGTTAATGCAACATACATGTCGATAAAAAGGACAAAA
GAAAAGTCACTCTATGAAGTGTGAGAAATCACAAATGCTGAAGAGAGTGT
TGTGTCAATAATCTCAACTCGAACTGGAAAATGAGATTGTTGTCAGCCAA
ATGATAGTGATGATGGTTTCTGGTTGTTAAGAGCAACCTGGATACTCAGA
TTAAATTAGTTTTTTGTTAGAAAAAGTCTTTTGAACTTAAATTTCCCTAG
GACCAGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002960XLOC_002960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005209-exon-sc0000051-1575043694:444813..444897TCONS_00005209-exon-sc0000051-1575043694:444813..444897Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1575043694:444111..444132TCONS_00005209-exon-sc0000051-1575043694:444111..444132Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1575043694:443343..443370TCONS_00005209-exon-sc0000051-1575043694:443343..443370Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1575043694:441327..441348TCONS_00005209-exon-sc0000051-1575043694:441327..441348Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1575043694:440838..441133TCONS_00005209-exon-sc0000051-1575043694:440838..441133Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1510915933:444813..444897TCONS_00005209-exon-sc0000051-1510915933:444813..444897Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1510915933:444111..444132TCONS_00005209-exon-sc0000051-1510915933:444111..444132Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1510915933:443343..443370TCONS_00005209-exon-sc0000051-1510915933:443343..443370Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1510915933:441327..441348TCONS_00005209-exon-sc0000051-1510915933:441327..441348Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1510915933:440838..441133TCONS_00005209-exon-sc0000051-1510915933:440838..441133Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1491911889:444813..444897TCONS_00005209-exon-sc0000051-1491911889:444813..444897Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1491911889:444111..444132TCONS_00005209-exon-sc0000051-1491911889:444111..444132Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1491911889:443343..443370TCONS_00005209-exon-sc0000051-1491911889:443343..443370Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1491911889:441327..441348TCONS_00005209-exon-sc0000051-1491911889:441327..441348Clytia hemisphaericaexon
TCONS_00005209-exon-sc0000051-1491911889:440838..441133TCONS_00005209-exon-sc0000051-1491911889:440838..441133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:440838..444897 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.175007	0.183789	0.0758843	0	0.290508	0.241753	0.200851	0.330253	0.265809	0.600334	0.111877	0.463692	0.48522	0	0.102856	0	0.0757834	15.4096	11.5893	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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