TCONS_00005226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005226
Unique NameTCONS_00005226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005226 ID=TCONS_00005226|Name=TCONS_00005226|organism=Clytia hemisphaerica|type=transcript|length=200bp
GAAGAAACTCAACATTCTTCATCCGAACGGTTTCAAACCGCTCAAACTCG
GTGTCATCCCGATCAACGAAGTTTGTCAGATCCTCAACCCCAATCACACC
GACAAGGAGAATGTGACACCCGCAACCACCGCTAAACCTAAGAAACGCAA
AAGCGACGAGAATCAAAACCAAGCCACACCACGGAAAAaatcaccccccc
Run BLAST on NCBI

transcript from alignment at sc0000051:572946..573367-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005226 ID=TCONS_00005226|Name=TCONS_00005226|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000051:572946..573367- (Clytia hemisphaerica)
GAAGAAACTCAACATTCTTCATCCGAACGGTAAAATCTCCCCATCGTTTT
TTAACTTCGACAAGAATCAATTCACAAAAGCACTCTTTAACGAAATCCCC
AACAAAACACAATGTAAAGACACCTTTGATGAAATCGGAAAGCTTTTGAT
CAAATCGCCTAAGAATCCGCTTTTCGACCCCGCATCGTTCGTTTCCAAAG
CTGAATTCGTCAGTCTCTACAACTATCACTTCAAATGTCATGTTTCTCCA
GGTTTCAAACCGCTCAAACTCGGTGTCATCCCGATCAACGAAGTTTGTCA
GATCCTCAACCCCAATCACACCGACAAGGAGAATGTGACACCCGCAACCA
CCGCTAAACCTAAGAAACGCAAAAGCGACGAGAATCAAAACCAAGCCACA
CCACGGAAAAAATCACCCCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002970XLOC_002970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005226-exon-sc0000051-1575043694:573339..573367TCONS_00005226-exon-sc0000051-1575043694:573339..573367Clytia hemisphaericaexon
TCONS_00005226-exon-sc0000051-1575043694:572946..573116TCONS_00005226-exon-sc0000051-1575043694:572946..573116Clytia hemisphaericaexon
TCONS_00005226-exon-sc0000051-1510915933:573339..573367TCONS_00005226-exon-sc0000051-1510915933:573339..573367Clytia hemisphaericaexon
TCONS_00005226-exon-sc0000051-1510915933:572946..573116TCONS_00005226-exon-sc0000051-1510915933:572946..573116Clytia hemisphaericaexon
TCONS_00005226-exon-sc0000051-1491911889:573339..573367TCONS_00005226-exon-sc0000051-1491911889:573339..573367Clytia hemisphaericaexon
TCONS_00005226-exon-sc0000051-1491911889:572946..573116TCONS_00005226-exon-sc0000051-1491911889:572946..573116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:572946..573367 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	25.5749	36.4474	5.90677	9.78316	2.46203	2.8502	5.6106	0	0.034023	0	2.3081	0	2.95097	5.00047	0	0	0	0.128718	0	0	14.4785	12.4328	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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