TCONS_00005243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005243
Unique NameTCONS_00005243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005243 ID=TCONS_00005243|Name=TCONS_00005243|organism=Clytia hemisphaerica|type=transcript|length=678bp
CGGACGTGTTTAGAGAGcaaaagagaaaaagagaaaaagagaaaaaattg
tgaaaattgtgaaaatctTAAACTTTACAAAACTAATTTGGTTTGTTTGG
TTGCTGTTTGTTTACTTGTTTATTGTTTGTTTATTGTTAATTTGTCTTGT
TATTGAAATATGGATGATAATGTCAAAagagaaatgcaaaatttcattaa
agagGCGCTGAAGGAGCATgataaaaacatacaaaaattcATTTCCTCAA
ATTCAAAACTAATTTATGAACGACTTGATTCCATAAATCAATCTATCGAA
GATATTGGAAAGAGAATATCAAACGTGGAGCAAAAGGTCAAGAGCCAGGA
TTTGAAAATTACCGAAATTGAACAGTCTTTGGAATTCACGCAAGACCTAA
TCGATAAGAAAGTATCAGATCTCGACAAGCAATGGTCCAATAACCTCCAA
CAACAAGTGAATAACTTTAGAGATTGTAACTACTTTGCCAAACAAGAAAG
GGattactttaaaaataaaatgagaaCATTGGAAGACCGTAACAGACGCA
ACAATTTAAGAGTGGATGGGATAAAGGAGAGCGACAATGAGACGTGGGAT
GAATGCGaggaaaaagtgaaaagtttattaaagAATGTAATGGGTATTCA
AGAAGAAATCAATATTGAAAGGGCGCAC
Run BLAST on NCBI

protein sequence of TCONS_00005243-protein

>TCONS_00005243-protein ID=TCONS_00005243-protein|Name=TCONS_00005243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MDDNVKREMQNFIKEALKEHDKNIQKFISSNSKLIYERLDSINQSIEDIG
KRISNVEQKVKSQDLKITEIEQSLEFTQDLIDKKVSDLDKQWSNNLQQQV
NNFRDCNYFAKQERDYFKNKMRTLEDRNRRNNLRVDGIKESDNETWDECE
EKVKSLLKNVMGIQEEINIERAH
Run BLAST on NCBI

transcript from alignment at sc0000051:194455..195132

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005243 ID=TCONS_00005243|Name=TCONS_00005243|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000051:194455..195132 (Clytia hemisphaerica)
GTGCGCCCTTTCAATATTGATTTCTTCTTGAATACCCATTACATTcttta
ataaacttttcactttttcctCGCATTCATCCCACGTCTCATTGTCGCTC
TCCTTTATCCCATCCACTCTTAAATTGTTGCGTCTGTTACGGTCTTCCAA
TGttctcattttatttttaaagtaatCCCTTTCTTGTTTGGCAAAGTAGT
TACAATCTCTAAAGTTATTCACTTGTTGTTGGAGGTTATTGGACCATTGC
TTGTCGAGATCTGATACTTTCTTATCGATTAGGTCTTGCGTGAATTCCAA
AGACTGTTCAATTTCGGTAATTTTCAAATCCTGGCTCTTGACCTTTTGCT
CCACGTTTGATATTCTCTTTCCAATATCTTCGATAGATTGATTTATGGAA
TCAAGTCGTTCATAAATTAGTTTTGAATTTGAGGAAATgaatttttgtat
gtttttatcATGCTCCTTCAGCGCctctttaatgaaattttgcatttctc
tTTTGACATTATCATCCATATTTCAATAACAAGACAAATTAACAATAAAC
AAACAATAAACAAGTAAACAAACAGCAACCAAACAAACCAAATTAGTTTT
GTAAAGTTTAagattttcacaattttcacaattttttctctttttctctt
tttctcttttgCTCTCTAAACACGTCCG

Coding sequence (CDS) from alignment at sc0000051:194455..195132

>TCONS_00005243 ID=TCONS_00005243|Name=TCONS_00005243|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000051:194455..195132 (Clytia hemisphaerica)
GTGCGCCCTTTCAATATTGATTTCTTCTTGAATACCCATTACATTcttta
ataaacttttcactttttcctCGCATTCATCCCACGTCTCATTGTCGCTC
TCCTTTATCCCATCCACTCTTAAATTGTTGCGTCTGTTACGGTCTTCCAA
TGttctcattttatttttaaagtaatCCCTTTCTTGTTTGGCAAAGTAGT
TACAATCTCTAAAGTTATTCACTTGTTGTTGGAGGTTATTGGACCATTGC
TTGTCGAGATCTGATACTTTCTTATCGATTAGGTCTTGCGTGAATTCCAA
AGACTGTTCAATTTCGGTAATTTTCAAATCCTGGCTCTTGACCTTTTGCT
CCACGTTTGATATTCTCTTTCCAATATCTTCGATAGATTGATTTATGGAA
TCAAGTCGTTCATAAATTAGTTTTGAATTTGAGGAAATgaatttttgtat
gtttttatcATGCTCCTTCAGCGCctctttaatgaaattttgcatttctc
tTTTGACATTATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002984XLOC_002984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005243-exon-sc0000051-1491911889:194455..195132TCONS_00005243-exon-sc0000051-1491911889:194455..195132Clytia hemisphaericaexon
TCONS_00005243-exon-sc0000051-1510915933:194455..195132TCONS_00005243-exon-sc0000051-1510915933:194455..195132Clytia hemisphaericaexon
TCONS_00005243-exon-sc0000051-1575043694:194455..195132TCONS_00005243-exon-sc0000051-1575043694:194455..195132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005243-proteinTCONS_00005243-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:194455..195132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.983392	0.516364	1.79864	0.670359	0.714085	0.644891	2.3341	2.36725	2.03984	1.34229	0.076639	0.352656	0.90557	0.626962	0.730218	0.645347	0.738228	0.523842	0.56289	0.757316	0.292553	0.535115	0.173467	0.394267	0.649738	0.724844	0.4149	0.110698	0	0.0855426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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