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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005401 ID=TCONS_00005401|Name=TCONS_00005401|organism=Clytia hemisphaerica|type=transcript|length=2380bp
caatgtccgactgaaaaagctatttgaccgactgaaaatcttttgtgtcg
gtcatgatgtccgaatgaaaaaagaaataaaccattaacttgagagttga
aaataaatctcttacacccctgtctcttacttagcctattcttttaatac
ttgcttcctttgtagctttcagggtgtttctaagttaacttttatcgact
tgctttcttcattactttctttgtttctaagaccacttttatcaaccctc
tttctttgtaactcctttaagggtgtttctaaattacttttgtcaacttg
ctttcttcgtaaccttccttgtttctaagatcacttttatcgatttgctt
tttctttgtaactttcaagggtgtttcaaagttaacttttatcgactcgc
tttcttcataactttcaagagtgtttctaagatcacttttatcaattcac
tttctttgtaactttcaagggtgtttcaaagttaaacttttatcaattcg
ctttcttcgtaactttcaagagtgtttctaagatcacttttatcaattcg
ctttctttgtaactttcaagggtgtttcaaagttaaacttttatcaactc
gctttcttcgtaactttcaagagtgtttctaagatcacttttatcaactt
gctttcttcgtaacttccaagGGTCTAAgatctaagatcacttttatcaa
atcaatttctctgttatatacagtaacaaactgttcaaaggtaactttca
tttttcctactcgctttctccgtaactttaaaaaaaatatacacttaATG
ACCGACAGgtttttgagtttgaccgacaggatttcatttctgtcggacat
gatgtccgattgactaaaaatatttatttgcagccctgaaGGTCTATTGA
TTCATGtatgtatttattttttacaacaCCTATGCTCACTGTTTggagtg
aaagtgaaagtaaatgCAAATAAGATTGTAGCCTAGCTATGTACAAATTA
GAGATATCGACAGAGACATATACTAGCTGTATTTGTATAAGGGTTTACGC
ACAAGGGTAGTTGAAACCGGCTGAGGATGCAGCGCATCAAAGGCCGACTG
TCAATCATCACACTTTTATTCTGGACAGCCGCCCATCGCCATTTTCATTT
CAGTTCTACTGGCACTTTGGGTACCATTTTGAATCCAGGTCTATCATCAA
AATGATAAAGGTTTCCCAGTATTAAGCCAAACCAGTTCTAGATTTCACTG
TTTTAGCAAATATTTCTGCAACAGAGACCATGACAAATGCATGTTCACCG
CTAGCGCACCTTTTTAATTTTGTAGTTTTCCTTCAAAATGGCTGACGCCG
ATTGATTGAGGCCTTACTGTGGCTTTGTATAAGATTTTCCTTTCCGTACC
AAGAATCCTACTTTTCTAGAGGAAAACAACCAGGACTTCAAGTAGTTAAA
AAATAAGTTTGGAGAGTTAAAAGCAGTTTCATGAGTAAACACCAGATTTT
CTGTACCTTTAAAAACAAACCCTTTTCAATCTTATGCTGGTTATCATTGT
AAAAGGTTTTTTAGTGAAGAAGTGAGAAAAATCTGTGAAAATGGGAATTT
TATATAAAACAACATAGGGTCAGCCCAGgtctaggtcccaggcaaaaaaa
taGGCCCCCCCCAAATATTAAAAGTTCTGTACGCAGCCCCCAGACCTATA
TATACCTAGTGCTATATTTGTTGATTTAATATTGTTTTCAGGAAAATCAC
ATCTATTTTTTTGCCATTCTAGAAATGTTAACGTTTTTAAGATGATGTAG
AGAGGCCTTTATTTTCATGGGTGAAAATGACTATAATGCACAGTAGAGTG
GTGGGTCAACTAGAATTTGGGCAAATTGGGGATgcaattttagaagattt
tgattttggcgcccGCTATGATAAAGTAAatatctgtttaaaaagtaaCG
CGAGCGAAGTAATCACGAGAATTTTGGGGTGTTTTCActcttttttggcc
aaaaactgCCATATCTAAGATGTAAAAGAGTAAAGGGGCACcaaaattag
taatcagagCCATCTTTTTGCACTCTTTGTTTTTTCGGCACCCCTTTGAA
AAACCTACGCTCGGGGgcatttttatttctatttggttgagttgcaggat
gctttgaggcctattttctaTTATGCCGGTAGACGAAAGACATCACTCGT
AAGTGTTATTAAAGTAAGGGTACCTAGAAACTTTTTGGTGTCGTTTTTGC
GGAGAGGGAATATTGTAGACTGCAAAGTGGGTTTTCCTAAATATTTTAGA
AACGAAGAAAGATATAAGAATGCGGATTATTTTAGAAGAAAGCcggttag
gaacatttggcgagttcctgtacgcggtcg Run BLAST on NCBI transcript from alignment at sc0000052:610075..612454 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005401 ID=TCONS_00005401|Name=TCONS_00005401|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at sc0000052:610075..612454 (Clytia hemisphaerica)
cgaccgcgtacaggaactcgccaaatgttcctaaccgGCTTTCTTCTAAA
ATAATCCGCATTCTTATATCTTTCTTCGTTTCTAAAATATTTAGGAAAAC
CCACTTTGCAGTCTACAATATTCCCTCTCCGCAAAAACGACACCAAAAAG
TTTCTAGGTACCCTTACTTTAATAACACTTACGAGTGATGTCTTTCGTCT
ACCGGCATAAtagaaaataggcctcaaagcatcctgcaactcaaccaaat
agaaataaaaatgcCCCCGAGCGTAGGTTTTTCAAAGGGGTGCCGAAAAA
ACAAAGAGTGCAAAAAGATGGctctgattactaattttgGTGCCCCTTTA
CTCTTTTACATCTTAGATATGGcagtttttggccaaaaaagagTGAAAAC
ACCCCAAAATTCTCGTGATTACTTCGCTCGCGttactttttaaacagata
tTTACTTTATCATAGCgggcgccaaaatcaaaatcttctaaaattgcATC
CCCAATTTGCCCAAATTCTAGTTGACCCACCACTCTACTGTGCATTATAG
TCATTTTCACCCATGAAAATAAAGGCCTCTCTACATCATCTTAAAAACGT
TAACATTTCTAGAATGGCAAAAAAATAGATGTGATTTTCCTGAAAACAAT
ATTAAATCAACAAATATAGCACTAGGTATATATAGGTCTGGGGGCTGCGT
ACAGAACTTTTAATATTTGGGGGGGGCCtatttttttgcctgggacctag
acCTGGGCTGACCCTATGTTGTTTTATATAAAATTCCCATTTTCACAGAT
TTTTCTCACTTCTTCACTAAAAAACCTTTTACAATGATAACCAGCATAAG
ATTGAAAAGGGTTTGTTTTTAAAGGTACAGAAAATCTGGTGTTTACTCAT
GAAACTGCTTTTAACTCTCCAAACTTATTTTTTAACTACTTGAAGTCCTG
GTTGTTTTCCTCTAGAAAAGTAGGATTCTTGGTACGGAAAGGAAAATCTT
ATACAAAGCCACAGTAAGGCCTCAATCAATCGGCGTCAGCCATTTTGAAG
GAAAACTACAAAATTAAAAAGGTGCGCTAGCGGTGAACATGCATTTGTCA
TGGTCTCTGTTGCAGAAATATTTGCTAAAACAGTGAAATCTAGAACTGGT
TTGGCTTAATACTGGGAAACCTTTATCATTTTGATGATAGACCTGGATTC
AAAATGGTACCCAAAGTGCCAGTAGAACTGAAATGAAAATGGCGATGGGC
GGCTGTCCAGAATAAAAGTGTGATGATTGACAGTCGGCCTTTGATGCGCT
GCATCCTCAGCCGGTTTCAACTACCCTTGTGCGTAAACCCTTATACAAAT
ACAGCTAGTATATGTCTCTGTCGATATCTCTAATTTGTACATAGCTAGGC
TACAATCTTATTTGcatttactttcactttcactccAAACAGTGAGCATA
GGtgttgtaaaaaataaatacataCATGAATCAATAGACCttcagggctg
caaataaatatttttagtcaatcggacatcatgtccgacagaaatgaaat
cctgtcggtcaaactcaaaaacCTGTCGGTCATtaagtgtatattttttt
taaagttacggagaaagcgagtaggaaaaatgaaagttacctttgaacag
tttgttactgtatataacagagaaattgatttgataaaagtgatcttaga
tcTTAGACCcttggaagttacgaagaaagcaagttgataaaagtgatctt
agaaacactcttgaaagttacgaagaaagcgagttgataaaagtttaact
ttgaaacacccttgaaagttacaaagaaagcgaattgataaaagtgatct
tagaaacactcttgaaagttacgaagaaagcgaattgataaaagtttaac
tttgaaacacccttgaaagttacaaagaaagtgaattgataaaagtgatc
ttagaaacactcttgaaagttatgaagaaagcgagtcgataaaagttaac
tttgaaacacccttgaaagttacaaagaaaaagcaaatcgataaaagtga
tcttagaaacaaggaaggttacgaagaaagcaagttgacaaaagtaattt
agaaacacccttaaaggagttacaaagaaagagggttgataaaagtggtc
ttagaaacaaagaaagtaatgaagaaagcaagtcgataaaagttaactta
gaaacaccctgaaagctacaaaggaagcaagtattaaaagaataggctaa
gtaagagacaggggtgtaagagatttattttcaactctcaagttaatggt
ttatttcttttttcattcggacatcatgaccgacacaaaagattttcagt
cggtcaaatagctttttcagtcggacattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005401-exon-sc0000052-1491911889:610075..612454 | TCONS_00005401-exon-sc0000052-1491911889:610075..612454 | Clytia hemisphaerica | exon |
| TCONS_00005401-exon-sc0000052-1510915933:610075..612454 | TCONS_00005401-exon-sc0000052-1510915933:610075..612454 | Clytia hemisphaerica | exon |
| TCONS_00005401-exon-sc0000052-1575043694:610075..612454 | TCONS_00005401-exon-sc0000052-1575043694:610075..612454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:610075..612454 . |
Blast
The following BLAST results are available for this feature:
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