TCONS_00005417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005417
Unique NameTCONS_00005417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005417 ID=TCONS_00005417|Name=TCONS_00005417|organism=Clytia hemisphaerica|type=transcript|length=659bp
TCTTGTACCCCATGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATG
GTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCC
CATGGTCGTCTAGTACTCCACCAGTATGGCCTGGTAGGACCCCAAGGATC
GTATGTTGGTCGATCAGTATTCCACGGTCGTCTGGTACTCCACCAGTAAG
GTCGGGTGGGTCCCCAAGGATCATATGTTCGTGGTCGGTCAGTTCCACGG
GGTGCCGTGCTCCACCAATAAGGTCTTGTGGGTCCCCATGGATCGTATGT
AGTTCTGGGTCGTCTTGGGGTCCAGTAAGGTTGAACAATACGTTTTGCGT
TGACTTTGTTATTGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTACGTAA
ATTTCGTCATCTTCGTAATAGTCTTCTTGAACTTCCACAACTGAAACAAA
TTattatctatattataatacgcttaaatcggaactctcccattctcgca
tgaggctttttcgctagggatttttaaatacacggcaatttttttcgcgc
ctttttgaTTGTATATTCAATTCTATTCGCCAAGTGCACTTCCATTCAAG
AGAGCACATTTCTCCTTGATGGAGAAACACAACTGACTGTGCAATAGCAC
TATCAGCAT
Run BLAST on NCBI

protein sequence of TCONS_00005417-protein

>TCONS_00005417-protein ID=TCONS_00005417-protein|Name=TCONS_00005417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
SCTPWSSGSPWSSCTPWSSCTPWSSCTPWSSCTPWSSSTPPVWPGRTPRI
VCWSISIPRSSGTPPVRSGGSPRIICSWSVSSTGCRAPPIRSCGSPWIVC
SSGSSWGPVRLNNTFCVDFVIVSVFGGSWLGYVNFVIFVIVFLNFHN
Run BLAST on NCBI

transcript from alignment at sc0000053:347396..348408+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005417 ID=TCONS_00005417|Name=TCONS_00005417|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at sc0000053:347396..348408+ (Clytia hemisphaerica)
TCTTGTACCCCATGGTCGTCTTGTTCCCCAAGGTCGTCTTGTACCCCAAG
GTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCC
CATGGTCGTCTGGTTCCCCAAGGTTTTCTGGTACCCCAAGGTCTTCTGGT
TCCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTC
TGGTCCACCATGGTCTTCTGGTGCCCCATGGTCGTCTTGTTCCCCAAGGT
CGTCTTGTACCCCATGGTCGTCTGGTCCACCATGGTCTTCTGGTGCCCCA
TGGTCGTCTTGTTCCCCAAGGTCTTCTTGTACCCCATGGTCTTCTTGTTC
CCCATGGTCGTCTGGTGCCCCATGGTCTTCTAGTACCCCATGGTCGTCTA
GTTCCCCAAGGTCTTGTACCCCATGGTCTTCTGGTACCCCAAGGTCTTGT
ACCCCATGGTCGTCTAGTACTCCACCAGTATGGCCTGGTAGGACCCCAAG
GATCGTATGTTGGTCGATCAGTATTCCACGGTCGTCTGGTACTCCACCAG
TAAGGTCGGGTGGGTCCCCAAGGATCATATGTTCGTGGTCGGTCAGTTCC
ACGGGGTGCCGTGCTCCACCAATAAGGTCTTGTGGGTCCCCATGGATCGT
ATGTAGTTCTGGGTCGTCTTGGGGTCCAGTAAGGTTGAACAATACGTTTT
GCGTTGACTTTGTTATTGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTAC
GTAAATTTCGTCATCTTCGTAATAGTCTTCTTGAACTTCCACAACTGAAA
CAAATTattatctatattataatacgcttaaatcggaactctcccattct
cgcatgaggctttttcgctagggatttttaaatacacggcaatttttttc
gcgcctttttgaTTGTATATTCAATTCTATTCGCCAAGTGCACTTCCATT
CAAGAGAGCACATTTCTCCTTGATGGAGAAACACAACTGACTGTGCAATA
GCACTATCAGCAT

Coding sequence (CDS) from alignment at sc0000053:347396..348408+

>TCONS_00005417 ID=TCONS_00005417|Name=TCONS_00005417|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000053:347396..348408+ (Clytia hemisphaerica)
TCTTGTACCCCATGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATG
GTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCC
CATGGTCGTCTAGTACTCCACCAGTATGGCCTGGTAGGACCCCAAGGATC
GTATGTTGGTCGATCAGTATTCCACGGTCGTCTGGTACTCCACCAGTAAG
GTCGGGTGGGTCCCCAAGGATCATATGTTCGTGGTCGGTCAGTTCCACGG
GGTGCCGTGCTCCACCAATAAGGTCTTGTGGGTCCCCATGGATCGTATGT
AGTTCTGGGTCGTCTTGGGGTCCAGTAAGGTTGAACAATACGTTTTGCGT
TGACTTTGTTATTGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTACGTAA
ATTTCGTCATCTTCGTAATAGTCTTCTTGAACTTCCACAACTGATCTTGT
ACCCCATGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATGGTCGTC
TTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGT
CGTCTAGTACTCCACCAGTATGGCCTGGTAGGACCCCAAGGATCGTATGT
TGGTCGATCAGTATTCCACGGTCGTCTGGTACTCCACCAGTAAGGTCGGG
TGGGTCCCCAAGGATCATATGTTCGTGGTCGGTCAGTTCCACGGGGTGCC
GTGCTCCACCAATAAGGTCTTGTGGGTCCCCATGGATCGTATGTAGTTCT
GGGTCGTCTTGGGGTCCAGTAAGGTTGAACAATACGTTTTGCGTTGACTT
TGTTATTGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTACGTAAATTTCG
TCATCTTCGTAATAGTCTTCTTGAACTTCCACAACTGATCTTGTACCCCA
TGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTAC
CCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTA
GTACTCCACCAGTATGGCCTGGTAGGACCCCAAGGATCGTATGTTGGTCG
ATCAGTATTCCACGGTCGTCTGGTACTCCACCAGTAAGGTCGGGTGGGTC
CCCAAGGATCATATGTTCGTGGTCGGTCAGTTCCACGGGGTGCCGTGCTC
CACCAATAAGGTCTTGTGGGTCCCCATGGATCGTATGTAGTTCTGGGTCG
TCTTGGGGTCCAGTAAGGTTGAACAATACGTTTTGCGTTGACTTTGTTAT
TGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTACGTAAATTTCGTCATCT
TCGTAATAGTCTTCTTGAACTTCCACAACTGATCTTGTACCCCATGGTCT
TCTGGTTCCCCATGGTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATG
GTCGTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTAGTACTC
CACCAGTATGGCCTGGTAGGACCCCAAGGATCGTATGTTGGTCGATCAGT
ATTCCACGGTCGTCTGGTACTCCACCAGTAAGGTCGGGTGGGTCCCCAAG
GATCATATGTTCGTGGTCGGTCAGTTCCACGGGGTGCCGTGCTCCACCAA
TAAGGTCTTGTGGGTCCCCATGGATCGTATGTAGTTCTGGGTCGTCTTGG
GGTCCAGTAAGGTTGAACAATACGTTTTGCGTTGACTTTGTTATTGTTTC
GGTTTTCGGTGGGAGTTGGTTGGGTTACGTAAATTTCGTCATCTTCGTAA
TAGTCTTCTTGAACTTCCACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003087XLOC_003087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005417-exon-sc0000053-1491911889:347396..347409TCONS_00005417-exon-sc0000053-1491911889:347396..347409Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1510915933:347396..347409TCONS_00005417-exon-sc0000053-1510915933:347396..347409Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1575043694:347396..347409TCONS_00005417-exon-sc0000053-1575043694:347396..347409Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1491911889:347446..347499TCONS_00005417-exon-sc0000053-1491911889:347446..347499Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1510915933:347446..347499TCONS_00005417-exon-sc0000053-1510915933:347446..347499Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1575043694:347446..347499TCONS_00005417-exon-sc0000053-1575043694:347446..347499Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1491911889:347644..347664TCONS_00005417-exon-sc0000053-1491911889:347644..347664Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1510915933:347644..347664TCONS_00005417-exon-sc0000053-1510915933:347644..347664Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1575043694:347644..347664TCONS_00005417-exon-sc0000053-1575043694:347644..347664Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1491911889:347839..348408TCONS_00005417-exon-sc0000053-1491911889:347839..348408Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1510915933:347839..348408TCONS_00005417-exon-sc0000053-1510915933:347839..348408Clytia hemisphaericaexon
TCONS_00005417-exon-sc0000053-1575043694:347839..348408TCONS_00005417-exon-sc0000053-1575043694:347839..348408Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005417-proteinTCONS_00005417-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:347396..348408 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25036	0.770107	2.56538	2.40596	1.52868	0.544752	0.949181	1.91051	0	2.71767	3.94669	1.86904	6.33502	4.02529	4.67137	2.85553	1.02751	2.11058	1.38074	8.98883	0	0	0	0	0	2.89514	0.211644	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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