TCONS_00005421 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005421
Unique Name	TCONS_00005421
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2360

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000053:400550..404649+

transcript sequence

>TCONS_00005421 ID=TCONS_00005421|Name=TCONS_00005421|organism=Clytia hemisphaerica|type=transcript|length=2360bp
aaaacataaagtATAAAGAAGAGTCAACATGAGTACTGGAGCAGAGTTTG
GTAATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGTGTT
GGTAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAACAC
ATATCAGGCTACAATTGGAATAGACTTTCTATCAAAGACCATGTACTTAG
AAGACCGGACGGTTAGACTACAGTTATGGGACACAGCAGGACAAGAGAGA
TTTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAGCTGTTGT
TGTTTACGATATTACAAACACAAACTCTTTCCAACAAACGAACAAATGGA
TAGAAGACGTGAAAGCAGAAAGAGGCAATGATGTCATCATCATGCTAGTG
GGAAACAAAACTGATTTAGCAGAAAAAAGGCAAGTAGCAACAGAGAGCGG
AGAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGAAACGAGCGCTA
AAGCAGGACACAACGTTAAACAGcttttcagACGAGTTGCCTCTGCATTA
CCTGGTATGGACAGTGCTCccgaacaaaacaaagatctcaTTGATGTCAA
ATTAGAAGACACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTT
GCTGAGTGATTTACCCCCATGTTGTGTGTAGTAAGTAGTAGTTTTACTCA
TTGAGGCTTGTAAGCTTTGGTTGGATGCTAGGCTTTTTTTCTACTGAAAG
ATCAATTGAATTCGCCGCCTTTTTTGATGTAGCGCCGCCTAAGGTTTGAT
GATACTACATCGAAAATTGCCTGTACCAAGCTCTTCTTCGCTGAAAATAT
AAGCCAAGTAcggtaaaaaattttcaaaatattaagaatcgCCCGTTAAA
GGGATGGTACAGGCtacattaaaatattttaaaagatttataGTGCTTTT
TCGTATGGGAACAACGAGTAACAATTTTCGGGAAGAATTGGTCGCTTTAT
TCGAAACTTATTATACTTTGATGATATGTATGCAGTAATCTTAgaggttt
ttctttttaatagattattagattttgttttctcgcttgaaattttaaaa
aaattattagaatttattattatttttagtttagttttttttttatttat
ttagttgataccttttgaaatttataaggggttgagaatttttttagcGA
ATTTTAATACACTAAGATACCTCTAGTGTTAACCTTCTTTCAAACTTGGT
CCCGTTTCTACATGAGATCGTTTCTAATAAATATACGGGAGTAAAACCTC
TCTCCTCAATCCGACGAACCTTAATTTAAGCTTGAGACTCGTTATGTAAA
ATGCACTATTACTTTTAAGATCATTTTTCACTTATAACGgtttgaaaaca
aaatgaagTCACTGTAATGGCTCATTTAAGGGCTAACAAGAGCTTACTTC
ATTTCAAGCCAATTAGCCTCTATCTTGCTTAAGAATTagcagatattcaa
tgggtaaaagttggcttcgcctcgttgaatTGCCTACTGGTATATAATAA
TCTGTAATAGCGTTTGAATTTATTCATATAACTTTTGTTGCAATTTTTAT
ATGCCTTCTCTAACTGCACTTTACTACACTTTACTATATGCATTTCAAAA
TGTGTACTTATCTTCGAAAAAATCACctttagtttgcttgttttttatat
tataacgattgaaattaaatatttattgtacATTGTGTCTTCCTTTATAT
TTTTGGTTATCAAACTTATAATTAATTTCTGTCACCAAAATCTTCTTCTG
ATCGACATTTTCCTTTAGGTTCTCACttcttttcagttttgaaattttgt
gttGACACTTCGGCAAGATTAGAAGAGGTCCGTGATTAAATAAGGATGTA
TTTAAAAATTTGGATCTTCCATTTTTAAAGCAATGAATTTCTTGGATATC
CGCTCTTAAAAATActtaccgggtgtgccacaaaaaagtttcgctctttg
aaactgattttctcgaaatctaaagaCTTTACAAGAACCAtgcctatttc
attggaaagaagaaacgATATGTcgattttttaacgttttcgggcacttt
ctgaaagtaacttttttattcaattgagcataacttttaaccaaatttaa
taaatgacccatcaaaatttaagtttatttttcttctttccaatgaaata
ggcatggttcttttaaagtttttagattttgagaaaatcagtttcaaaga
gcgaaattttttttgtggcacacccggtatagGGAGGGGacttagaaaaa
gaaaattagaaagaaTTTAGTGGCATATGTATAAAAGctgccaaattata
taaaaagaag

Run BLAST on NCBI

transcript from alignment at sc0000053:400550..404649+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005421 ID=TCONS_00005421|Name=TCONS_00005421|organism=Clytia hemisphaerica|type=transcript|length=4100bp|location=Sequence derived from alignment at sc0000053:400550..404649+ (Clytia hemisphaerica)
aaaacataaagtATAAAGAAGAGTCAACATGAGTACTGGAGCAGAGTTTG
GTAATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGTGGT
ATGTTAAACCCTTGTCactactttttaaaataatggTCTTACTATTGAAC
CTTTTCAAGCaaatttttttgtagaaagtAAGGGAATGGAGCTTGAACTT
CTTCAGCTCTTGTTTGATGACAGTTTAAAGCATCGTCTGAAGCTGCTGAT
TTCTGAAACTTTGGGCCATTCAACTTCTCATTAAATCGATTGAAGACAAA
AAGCTGTAGTAAAGATTTTTATGATTATATAATTTTCTTATGTTTTTAGT
TGGTAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAACA
CATATCAGGTTTgtattcttttgatttttgtttgattttggtCCATTTAA
AGACttaagaatgaaaatttttatcggTCAGCTCGAACATGAAATTCATT
GGAAAACCTGTAATCTTTATCGTGTTTTTGACCAGCTTCGAAGATTATAA
AATTTATTGTAAATGTCGAGGATAATACCAAGCTCAATAACTATTTCTTC
AACTCTCTTTTTTCCATAGGCTACAATTGGAATAGACTTTCTATCAAAGA
CCATGTACTTAGAAGACCGGACGGTTGGTTTTTATcatctttttactttt
tctttggttGATGAttaaaataaggaaaaagttTTTCGAATGATAAAAAG
TCTGGGAAAATTTTTAGTTAGGGAAAAAGTtggtcacttttccccgactt
TCTCACCCGGTAAGGGTTAATATTTATAAAGCGTTTGTGCTGTTCGCTCC
TTTCGATGTTCTGTTCAGCTTTCAGATAGCCGAGCCGGATAGCCGTGGat
cccgtgaaaacaatcgaaagactgttcAAAGTCTTGGATTACTATTTTCA
TATTCACGTCTCTACAACTGTTCCAtctttgtctttttttgaaccaattt
tttcatcttttctaTTTAGGTTAGACTACAGTTATGGGACACAGCAGGAC
AAGAGAGATTTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTA
GCTGTTGTTGTTTACGATATTACAAGTAAGTATGCATAGAATGGTCCTCC
AAGGAGATCGCAGAAGAGGAGCATTCCCAAACATTTCCCGACTCTATACT
CTTAGTGATCAAACAAATTAATTAAATTATTCAATATATTGATCACGTAA
TGCtctatacggaagcacccaaaatagcCGGGGCATTTGCCACTAATTGT
ATTATTTAAGTTCAAAATTAGTGACACCCTTGGGGCGTTTTTGGGTGCGT
CCGTATAGAACATTGCGTCATGAATATATTATATTCCGATCTTTCAGACA
CAAACTCTTTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGCAGAA
AGAGGCAATGATGTCATCATCATGCTAGTGGGAAACAAAACTGATTTAGC
AGAAAAAAGGTATTGCCCGCTTTTTCTTCTTACCCTTTCATTTTGCGGTA
AACACTTATtacataaatatattttttttattgttacaccctagcctata
ctagacgtcacggctTTTTTCCTATGcagaaacggaatgaaaaaccccgg
tttttggtgaggtgttTTCTAGTTACACCCATGAAACTAAACAAAAAAAG
GTCCGACAAAATTAATGTTTCATCagataatattaataattaCGATTCTT
ATTATTATTTCCAATCAAATGATATATCTCAATACTTTTATAGGCAAGTA
GCAACAGAGAGCGGAGAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCAT
CGAAACGAGCGCTAAAGCAGGACACAACGTTAAACAGGTAACAAAAATTT
ATGGAACTTGTTATTGAAACTTGGATATTCAAACCTTGCTGAATCTTGAT
TATTGTTAGCCCGTGGAGCAGATTCCGATTACTTTTTATAAACATCTTCC
CCGGTTAGTGATGCTACCTTGAAGTTCTTCATCTAAATTGAATGATATGG
ATGATGAGATTTGGTAGTGGTATTTACCCATTAAATGCAACCCATCCGAT
TTAGTCGGAGTCAAAATACAGGGTGGTATGGGTCGCAGACCTACTAGTAG
AACCAATATTTTTTGAGCGATCCCATTTATATGCCAGTGGCCTTTATTGG
GTTAACATAAGAAGCTCTATTACTcattattaaaaattatttttcatttt
tttcttttttcagcttttcagACGAGTTGCCTCTGCATTACCTGGTATGG
ACAGTGCTCccgaacaaaacaaagatctcaTTGATGTCAAATTAGAAGAC
ACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTTGCTGAGTGAT
TTACCCCCATGTTGTGTGTAGTAAGTAGTAGTTTTACTCATTGAGGCTTG
TAAGCTTTGGTTGGATGCTAGGCTTTTTTTCTACTGAAAGATCAATTGAA
TTCGCCGCCTTTTTTGATGTAGCGCCGCCTAAGGTTTGATGATACTACAT
CGAAAATTGCCTGTACCAAGCTCTTCTTCGCTGAAAATATAAGCCAAGTA
cggtaaaaaattttcaaaatattaagaatcgCCCGTTAAAGGGATGGTAC
AGGCtacattaaaatattttaaaagatttataGTGCTTTTTCGTATGGGA
ACAACGAGTAACAATTTTCGGGAAGAATTGGTCGCTTTATTCGAAACTTA
TTATACTTTGATGATATGTATGCAGTAATCTTAgaggtttttctttttaa
tagattattagattttgttttctcgcttgaaattttaaaaaaattattag
aatttattattatttttagtttagttttttttttatttatttagttgata
ccttttgaaatttataaggggttgagaatttttttagcGAATTTTAATAC
ACTAAGATACCTCTAGTGTTAACCTTCTTTCAAACTTGGTCCCGTTTCTA
CATGAGATCGTTTCTAATAAATATACGGGAGTAAAACCTCTCTCCTCAAT
CCGACGAACCTTAATTTAAGCTTGAGACTCGTTATGTAAAATGCACTATT
ACTTTTAAGATCATTTTTCACTTATAACGgtttgaaaacaaaatgaagTC
ACTGTAATGGCTCATTTAAGGGCTAACAAGAGCTTACTTCATTTCAAGCC
AATTAGCCTCTATCTTGCTTAAGAATTagcagatattcaatgggtaaaag
ttggcttcgcctcgttgaatTGCCTACTGGTATATAATAATCTGTAATAG
CGTTTGAATTTATTCATATAACTTTTGTTGCAATTTTTATATGCCTTCTC
TAACTGCACTTTACTACACTTTACTATATGCATTTCAAAATGTGTACTTA
TCTTCGAAAAAATCACctttagtttgcttgttttttatattataacgatt
gaaattaaatatttattgtacATTGTGTCTTCCTTTATATTTTTGGTTAT
CAAACTTATAATTAATTTCTGTCACCAAAATCTTCTTCTGATCGACATTT
TCCTTTAGGTTCTCACttcttttcagttttgaaattttgtgttGACACTT
CGGCAAGATTAGAAGAGGTCCGTGATTAAATAAGGATGTATTTAAAAATT
TGGATCTTCCATTTTTAAAGCAATGAATTTCTTGGATATCCGCTCTTAAA
AATActtaccgggtgtgccacaaaaaagtttcgctctttgaaactgattt
tctcgaaatctaaagaCTTTACAAGAACCAtgcctatttcattggaaaga
agaaacgATATGTcgattttttaacgttttcgggcactttctgaaagtaa
cttttttattcaattgagcataacttttaaccaaatttaataaatgaccc
atcaaaatttaagtttatttttcttctttccaatgaaataggcatggttc
ttttaaagtttttagattttgagaaaatcagtttcaaagagcgaaatttt
ttttgtggcacacccggtatagGGAGGGGacttagaaaaagaaaattaga
aagaaTTTAGTGGCATATGTATAAAAGctgccaaattatataaaaagaag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003089	XLOC_003089	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000053	supercontig	sc0000053:400550..404649 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.60051	6.94093	3.73672	4.4667	19.1781	14.504	23.2672	26.5892	15.0891	16.7462	16.3324	12.6637	10.1212	9.13922	8.9801	9.55264	18.8196	20.1145	4.53148	5.35372	11.9658	13.8098	8.93451	11.0373	18.0449	20.7352	9.2849	5.63445	12.0557	9.92024

Blast

[Close]

BLAST of TCONS_00005421 vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 362.844 bits (930), Expect = 1.140e-119
Identity = 175/209 (83.73%), Postives = 192/209 (91.87%), Query Frame = 2

Query:   29 MSTGAEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFQQTNKWIEDVKAERGNDVIIMLVGNKTDLAEKRQVATESGEAKAKELGVMFIETSAKAGHNVKQLFRRVASALPGMDSAPEQNK-DLIDVKLEDTPQDAPQEGGGCSC 652
            MSTG +FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSFQQT KWI+DV+ ERG+DVIIMLVGNKTDLA+KRQV+ E GE KAKEL VMFIETSAKAG+NVKQLFRRVA+ALPGM+S  ++++ D+ID+KLE  PQ+ P   GGCSC
Sbjct:    1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLE-KPQEQPVSEGGCSC 208

The following BLAST results are available for this feature:

BLAST of TCONS_00005421 vs. Swiss-Prot (Human)

BLAST of TCONS_00005421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAB6A	1.140e-119	83.73	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6...	[more]

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TCONS_00005421 (transcript) - C. hemisphaerica