TCONS_00005422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005422
Unique NameTCONS_00005422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005422 ID=TCONS_00005422|Name=TCONS_00005422|organism=Clytia hemisphaerica|type=transcript|length=2102bp
acataaagtATAAAGAAGAGTCAACATGAGTACTGGAGCAGAGTTTGGTA
ATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGTGTTGGT
AAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAACACATA
TCAGGCTACAATTGGAATAGACTTTCTATCAAAGACCATGTACTTAGAAG
ACCGGACGGTTAGACTACAGTTATGGGACACAGCAGGACAAGAGAGATTT
CGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAGCTGTTGTTGT
TTACGATATTACAAACACAAACTCTTTCCAACAAACGAACAAATGGATAG
AAGACGTGAAAGCAGAAAGAGGCAATGATGTCATCATCATGCTAGTGGGA
AACAAAACTGATTTAGCAGAAAAAAGGCAAGTAGCAACAGAGAGCGGAGA
AGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGAAACGAGCGCTAAAG
CAGGACACAACGTTAAACAGcttttcagACGAGTTGCCTCTGCATTACCT
GGTATGGACAGTGCTCccgaacaaaacaaagatctcaTTGATGTCAAATT
AGAAGACACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTTGCT
GAGTGATTTACCCCCATGTTGTGTGTAatttataGTGCTTTTTCGTATGG
GAACAACGAGTAACAATTTTCGGGAAGAATTGGTCGCTTTATTCGAAACT
TATTATACTTTGATGATATGTATGCAGTAATCTTAgaggtttttcttttt
aatagattattagattttgttttctcgcttgaaattttaaaaaaattatt
agaatttattattatttttagtttagttttttttttatttatttagttga
taccttttgaaatttataaggggttgagaatttttttagcGAATTTTAAT
ACACTAAGATACCTCTAGTGTTAACCTTCTTTCAAACTTGGTCCCGTTTC
TACATGAGATCGTTTCTAATAAATATACGGGAGTAAAACCTCTCTCCTCA
ATCCGACGAACCTTAATTTAAGCTTGAGACTCGTTATGTAAAATGCACTA
TTACTTTTAAGATCATTTTTCACTTATAACGgtttgaaaacaaaatgaag
TCACTGTAATGGCTCATTTAAGGGCTAACAAGAGCTTACTTCATTTCAAG
CCAATTAGCCTCTATCTTGCTTAAGAATTagcagatattcaatgggtaaa
agttggcttcgcctcgttgaatTGCCTACTGGTATATAATAATCTGTAAT
AGCGTTTGAATTTATTCATATAACTTTTGTTGCAATTTTTATATGCCTTC
TCTAACTGCACTTTACTACACTTTACTATATGCATTTCAAAATGTGTACT
TATCTTCGAAAAAATCACctttagtttgcttgttttttatattataacga
ttgaaattaaatatttattgtacATTGTGTCTTCCTTTATATTTTTGGTT
ATCAAACTTATAATTAATTTCTGTCACCAAAATCTTCTTCTGATCGACAT
TTTCCTTTAGGTTCTCACttcttttcagttttgaaattttgtgttGACAC
TTCGGCAAGATTAGAAGAGGTCCGTGATTAAATAAGGATGTATTTAAAAA
TTTGGATCTTCCATTTTTAAAGCAATGAATTTCTTGGATATCCGCTCTTA
AAAATActtaccgggtgtgccacaaaaaagtttcgctctttgaaactgat
tttctcgaaatctaaagaCTTTACAAGAACCAtgcctatttcattggaaa
gaagaaacgATATGTcgattttttaacgttttcgggcactttctgaaagt
aacttttttattcaattgagcataacttttaaccaaatttaataaatgac
ccatcaaaatttaagtttatttttcttctttccaatgaaataggcatggt
tcttttaaagtttttagattttgagaaaatcagtttcaaagagcgaaatt
ttttttgtggcacacccggtatagGGAGGGGacttagaaaaagaaaatta
gaaagaaTTTAGTGGCATATGTATAAAAGctgccaaattatataaaaaga
ag
Run BLAST on NCBI

protein sequence of TCONS_00005422-protein

>TCONS_00005422-protein ID=TCONS_00005422-protein|Name=TCONS_00005422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MSTGAEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF
LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNS
FQQTNKWIEDVKAERGNDVIIMLVGNKTDLAEKRQVATESGEAKAKELGV
MFIETSAKAGHNVKQLFRRVASALPGMDSAPEQNKDLIDVKLEDTPQDAP
QEGGGCSC
Run BLAST on NCBI

transcript from alignment at sc0000053:400553..404649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005422 ID=TCONS_00005422|Name=TCONS_00005422|organism=Clytia hemisphaerica|type=transcript|length=4097bp|location=Sequence derived from alignment at sc0000053:400553..404649+ (Clytia hemisphaerica)
acataaagtATAAAGAAGAGTCAACATGAGTACTGGAGCAGAGTTTGGTA
ATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGTGGTATG
TTAAACCCTTGTCactactttttaaaataatggTCTTACTATTGAACCTT
TTCAAGCaaatttttttgtagaaagtAAGGGAATGGAGCTTGAACTTCTT
CAGCTCTTGTTTGATGACAGTTTAAAGCATCGTCTGAAGCTGCTGATTTC
TGAAACTTTGGGCCATTCAACTTCTCATTAAATCGATTGAAGACAAAAAG
CTGTAGTAAAGATTTTTATGATTATATAATTTTCTTATGTTTTTAGTTGG
TAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAACACAT
ATCAGGTTTgtattcttttgatttttgtttgattttggtCCATTTAAAGA
CttaagaatgaaaatttttatcggTCAGCTCGAACATGAAATTCATTGGA
AAACCTGTAATCTTTATCGTGTTTTTGACCAGCTTCGAAGATTATAAAAT
TTATTGTAAATGTCGAGGATAATACCAAGCTCAATAACTATTTCTTCAAC
TCTCTTTTTTCCATAGGCTACAATTGGAATAGACTTTCTATCAAAGACCA
TGTACTTAGAAGACCGGACGGTTGGTTTTTATcatctttttactttttct
ttggttGATGAttaaaataaggaaaaagttTTTCGAATGATAAAAAGTCT
GGGAAAATTTTTAGTTAGGGAAAAAGTtggtcacttttccccgacttTCT
CACCCGGTAAGGGTTAATATTTATAAAGCGTTTGTGCTGTTCGCTCCTTT
CGATGTTCTGTTCAGCTTTCAGATAGCCGAGCCGGATAGCCGTGGatccc
gtgaaaacaatcgaaagactgttcAAAGTCTTGGATTACTATTTTCATAT
TCACGTCTCTACAACTGTTCCAtctttgtctttttttgaaccaatttttt
catcttttctaTTTAGGTTAGACTACAGTTATGGGACACAGCAGGACAAG
AGAGATTTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAGCT
GTTGTTGTTTACGATATTACAAGTAAGTATGCATAGAATGGTCCTCCAAG
GAGATCGCAGAAGAGGAGCATTCCCAAACATTTCCCGACTCTATACTCTT
AGTGATCAAACAAATTAATTAAATTATTCAATATATTGATCACGTAATGC
tctatacggaagcacccaaaatagcCGGGGCATTTGCCACTAATTGTATT
ATTTAAGTTCAAAATTAGTGACACCCTTGGGGCGTTTTTGGGTGCGTCCG
TATAGAACATTGCGTCATGAATATATTATATTCCGATCTTTCAGACACAA
ACTCTTTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGCAGAAAGA
GGCAATGATGTCATCATCATGCTAGTGGGAAACAAAACTGATTTAGCAGA
AAAAAGGTATTGCCCGCTTTTTCTTCTTACCCTTTCATTTTGCGGTAAAC
ACTTATtacataaatatattttttttattgttacaccctagcctatacta
gacgtcacggctTTTTTCCTATGcagaaacggaatgaaaaaccccggttt
ttggtgaggtgttTTCTAGTTACACCCATGAAACTAAACAAAAAAAGGTC
CGACAAAATTAATGTTTCATCagataatattaataattaCGATTCTTATT
ATTATTTCCAATCAAATGATATATCTCAATACTTTTATAGGCAAGTAGCA
ACAGAGAGCGGAGAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGA
AACGAGCGCTAAAGCAGGACACAACGTTAAACAGGTAACAAAAATTTATG
GAACTTGTTATTGAAACTTGGATATTCAAACCTTGCTGAATCTTGATTAT
TGTTAGCCCGTGGAGCAGATTCCGATTACTTTTTATAAACATCTTCCCCG
GTTAGTGATGCTACCTTGAAGTTCTTCATCTAAATTGAATGATATGGATG
ATGAGATTTGGTAGTGGTATTTACCCATTAAATGCAACCCATCCGATTTA
GTCGGAGTCAAAATACAGGGTGGTATGGGTCGCAGACCTACTAGTAGAAC
CAATATTTTTTGAGCGATCCCATTTATATGCCAGTGGCCTTTATTGGGTT
AACATAAGAAGCTCTATTACTcattattaaaaattatttttcattttttt
cttttttcagcttttcagACGAGTTGCCTCTGCATTACCTGGTATGGACA
GTGCTCccgaacaaaacaaagatctcaTTGATGTCAAATTAGAAGACACG
CCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTTGCTGAGTGATTTA
CCCCCATGTTGTGTGTAGTAAGTAGTAGTTTTACTCATTGAGGCTTGTAA
GCTTTGGTTGGATGCTAGGCTTTTTTTCTACTGAAAGATCAATTGAATTC
GCCGCCTTTTTTGATGTAGCGCCGCCTAAGGTTTGATGATACTACATCGA
AAATTGCCTGTACCAAGCTCTTCTTCGCTGAAAATATAAGCCAAGTAcgg
taaaaaattttcaaaatattaagaatcgCCCGTTAAAGGGATGGTACAGG
CtacattaaaatattttaaaagatttataGTGCTTTTTCGTATGGGAACA
ACGAGTAACAATTTTCGGGAAGAATTGGTCGCTTTATTCGAAACTTATTA
TACTTTGATGATATGTATGCAGTAATCTTAgaggtttttctttttaatag
attattagattttgttttctcgcttgaaattttaaaaaaattattagaat
ttattattatttttagtttagttttttttttatttatttagttgatacct
tttgaaatttataaggggttgagaatttttttagcGAATTTTAATACACT
AAGATACCTCTAGTGTTAACCTTCTTTCAAACTTGGTCCCGTTTCTACAT
GAGATCGTTTCTAATAAATATACGGGAGTAAAACCTCTCTCCTCAATCCG
ACGAACCTTAATTTAAGCTTGAGACTCGTTATGTAAAATGCACTATTACT
TTTAAGATCATTTTTCACTTATAACGgtttgaaaacaaaatgaagTCACT
GTAATGGCTCATTTAAGGGCTAACAAGAGCTTACTTCATTTCAAGCCAAT
TAGCCTCTATCTTGCTTAAGAATTagcagatattcaatgggtaaaagttg
gcttcgcctcgttgaatTGCCTACTGGTATATAATAATCTGTAATAGCGT
TTGAATTTATTCATATAACTTTTGTTGCAATTTTTATATGCCTTCTCTAA
CTGCACTTTACTACACTTTACTATATGCATTTCAAAATGTGTACTTATCT
TCGAAAAAATCACctttagtttgcttgttttttatattataacgattgaa
attaaatatttattgtacATTGTGTCTTCCTTTATATTTTTGGTTATCAA
ACTTATAATTAATTTCTGTCACCAAAATCTTCTTCTGATCGACATTTTCC
TTTAGGTTCTCACttcttttcagttttgaaattttgtgttGACACTTCGG
CAAGATTAGAAGAGGTCCGTGATTAAATAAGGATGTATTTAAAAATTTGG
ATCTTCCATTTTTAAAGCAATGAATTTCTTGGATATCCGCTCTTAAAAAT
Acttaccgggtgtgccacaaaaaagtttcgctctttgaaactgattttct
cgaaatctaaagaCTTTACAAGAACCAtgcctatttcattggaaagaaga
aacgATATGTcgattttttaacgttttcgggcactttctgaaagtaactt
ttttattcaattgagcataacttttaaccaaatttaataaatgacccatc
aaaatttaagtttatttttcttctttccaatgaaataggcatggttcttt
taaagtttttagattttgagaaaatcagtttcaaagagcgaaattttttt
tgtggcacacccggtatagGGAGGGGacttagaaaaagaaaattagaaag
aaTTTAGTGGCATATGTATAAAAGctgccaaattatataaaaagaag

Coding sequence (CDS) from alignment at sc0000053:400553..404649+

>TCONS_00005422 ID=TCONS_00005422|Name=TCONS_00005422|organism=Clytia hemisphaerica|type=CDS|length=4389bp|location=Sequence derived from alignment at sc0000053:400553..404649+ (Clytia hemisphaerica)
ATGAGTACTGGAGCAGAGTTTGGTAATCCTTTACGGAAATTCAAATTGGT
CTTTCTGGGTGAACAAAGTGTTGGTAAAACATCTCTTATCACCAGGTTTA
TGTATGACAGTTTCGATAACACATATCAGGCTACAATTGGAATAGACTTT
CTATCAAAGACCATGTACTTAGAAGACCGGACGGTTAGACTACAGTTATG
GGACACAGCAGGACAAGAGAGATTTCGAAGTTTAATTCCAAGCTATATCA
GAGATTCTTCTGTAGCTGTTGTTGTTTACGATATTACAAACACAAACTCT
TTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGCAGAAAGAGGCAA
TGATGTCATCATCATGCTAGTGGGAAACAAAACTGATTTAGCAGAAAAAA
GGCAAGTAGCAACAGAGAGCGGAGAAGCCAAAGCAAAAGAACTTGGTGTA
ATGTTCATCGAAACGAGCGCTAAAGCAGGACACAACGTTAAACAGctttt
cagACGAGTTGCCTCTGCATTACCTGGTATGGACAGTGCTCccgaacaaa
acaaagatctcaTTGATGTCAAATTAGAAGACACGCCCCAAGACGCCCCT
CAAGAGGGTGGTGGTTGTTCTTGCTGAATGAGTACTGGAGCAGAGTTTGG
TAATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGTGTTG
GTAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAACACA
TATCAGGCTACAATTGGAATAGACTTTCTATCAAAGACCATGTACTTAGA
AGACCGGACGGTTAGACTACAGTTATGGGACACAGCAGGACAAGAGAGAT
TTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAGCTGTTGTT
GTTTACGATATTACAAACACAAACTCTTTCCAACAAACGAACAAATGGAT
AGAAGACGTGAAAGCAGAAAGAGGCAATGATGTCATCATCATGCTAGTGG
GAAACAAAACTGATTTAGCAGAAAAAAGGCAAGTAGCAACAGAGAGCGGA
GAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGAAACGAGCGCTAA
AGCAGGACACAACGTTAAACAGcttttcagACGAGTTGCCTCTGCATTAC
CTGGTATGGACAGTGCTCccgaacaaaacaaagatctcaTTGATGTCAAA
TTAGAAGACACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTTG
CTGAATGAGTACTGGAGCAGAGTTTGGTAATCCTTTACGGAAATTCAAAT
TGGTCTTTCTGGGTGAACAAAGTGTTGGTAAAACATCTCTTATCACCAGG
TTTATGTATGACAGTTTCGATAACACATATCAGGCTACAATTGGAATAGA
CTTTCTATCAAAGACCATGTACTTAGAAGACCGGACGGTTAGACTACAGT
TATGGGACACAGCAGGACAAGAGAGATTTCGAAGTTTAATTCCAAGCTAT
ATCAGAGATTCTTCTGTAGCTGTTGTTGTTTACGATATTACAAACACAAA
CTCTTTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGCAGAAAGAG
GCAATGATGTCATCATCATGCTAGTGGGAAACAAAACTGATTTAGCAGAA
AAAAGGCAAGTAGCAACAGAGAGCGGAGAAGCCAAAGCAAAAGAACTTGG
TGTAATGTTCATCGAAACGAGCGCTAAAGCAGGACACAACGTTAAACAGc
ttttcagACGAGTTGCCTCTGCATTACCTGGTATGGACAGTGCTCccgaa
caaaacaaagatctcaTTGATGTCAAATTAGAAGACACGCCCCAAGACGC
CCCTCAAGAGGGTGGTGGTTGTTCTTGCTGAATGAGTACTGGAGCAGAGT
TTGGTAATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACAAAGT
GTTGGTAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCGATAA
CACATATCAGGCTACAATTGGAATAGACTTTCTATCAAAGACCATGTACT
TAGAAGACCGGACGGTTAGACTACAGTTATGGGACACAGCAGGACAAGAG
AGATTTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAGCTGT
TGTTGTTTACGATATTACAAACACAAACTCTTTCCAACAAACGAACAAAT
GGATAGAAGACGTGAAAGCAGAAAGAGGCAATGATGTCATCATCATGCTA
GTGGGAAACAAAACTGATTTAGCAGAAAAAAGGCAAGTAGCAACAGAGAG
CGGAGAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGAAACGAGCG
CTAAAGCAGGACACAACGTTAAACAGcttttcagACGAGTTGCCTCTGCA
TTACCTGGTATGGACAGTGCTCccgaacaaaacaaagatctcaTTGATGT
CAAATTAGAAGACACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGTTGTT
CTTGCTGAATGAGTACTGGAGCAGAGTTTGGTAATCCTTTACGGAAATTC
AAATTGGTCTTTCTGGGTGAACAAAGTGTTGGTAAAACATCTCTTATCAC
CAGGTTTATGTATGACAGTTTCGATAACACATATCAGGCTACAATTGGAA
TAGACTTTCTATCAAAGACCATGTACTTAGAAGACCGGACGGTTAGACTA
CAGTTATGGGACACAGCAGGACAAGAGAGATTTCGAAGTTTAATTCCAAG
CTATATCAGAGATTCTTCTGTAGCTGTTGTTGTTTACGATATTACAAACA
CAAACTCTTTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGCAGAA
AGAGGCAATGATGTCATCATCATGCTAGTGGGAAACAAAACTGATTTAGC
AGAAAAAAGGCAAGTAGCAACAGAGAGCGGAGAAGCCAAAGCAAAAGAAC
TTGGTGTAATGTTCATCGAAACGAGCGCTAAAGCAGGACACAACGTTAAA
CAGcttttcagACGAGTTGCCTCTGCATTACCTGGTATGGACAGTGCTCc
cgaacaaaacaaagatctcaTTGATGTCAAATTAGAAGACACGCCCCAAG
ACGCCCCTCAAGAGGGTGGTGGTTGTTCTTGCTGAATGAGTACTGGAGCA
GAGTTTGGTAATCCTTTACGGAAATTCAAATTGGTCTTTCTGGGTGAACA
AAGTGTTGGTAAAACATCTCTTATCACCAGGTTTATGTATGACAGTTTCG
ATAACACATATCAGGCTACAATTGGAATAGACTTTCTATCAAAGACCATG
TACTTAGAAGACCGGACGGTTAGACTACAGTTATGGGACACAGCAGGACA
AGAGAGATTTCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTAG
CTGTTGTTGTTTACGATATTACAAACACAAACTCTTTCCAACAAACGAAC
AAATGGATAGAAGACGTGAAAGCAGAAAGAGGCAATGATGTCATCATCAT
GCTAGTGGGAAACAAAACTGATTTAGCAGAAAAAAGGCAAGTAGCAACAG
AGAGCGGAGAAGCCAAAGCAAAAGAACTTGGTGTAATGTTCATCGAAACG
AGCGCTAAAGCAGGACACAACGTTAAACAGcttttcagACGAGTTGCCTC
TGCATTACCTGGTATGGACAGTGCTCccgaacaaaacaaagatctcaTTG
ATGTCAAATTAGAAGACACGCCCCAAGACGCCCCTCAAGAGGGTGGTGGT
TGTTCTTGCTGAATGAGTACTGGAGCAGAGTTTGGTAATCCTTTACGGAA
ATTCAAATTGGTCTTTCTGGGTGAACAAAGTGTTGGTAAAACATCTCTTA
TCACCAGGTTTATGTATGACAGTTTCGATAACACATATCAGGCTACAATT
GGAATAGACTTTCTATCAAAGACCATGTACTTAGAAGACCGGACGGTTAG
ACTACAGTTATGGGACACAGCAGGACAAGAGAGATTTCGAAGTTTAATTC
CAAGCTATATCAGAGATTCTTCTGTAGCTGTTGTTGTTTACGATATTACA
AACACAAACTCTTTCCAACAAACGAACAAATGGATAGAAGACGTGAAAGC
AGAAAGAGGCAATGATGTCATCATCATGCTAGTGGGAAACAAAACTGATT
TAGCAGAAAAAAGGCAAGTAGCAACAGAGAGCGGAGAAGCCAAAGCAAAA
GAACTTGGTGTAATGTTCATCGAAACGAGCGCTAAAGCAGGACACAACGT
TAAACAGcttttcagACGAGTTGCCTCTGCATTACCTGGTATGGACAGTG
CTCccgaacaaaacaaagatctcaTTGATGTCAAATTAGAAGACACGCCC
CAAGACGCCCCTCAAGAGGGTGGTGGTTGTTCTTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003089XLOC_003089Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005422-proteinTCONS_00005422-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005422-exon-sc0000053-1491911889:400553..400647TCONS_00005422-exon-sc0000053-1491911889:400553..400647Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:400553..400647TCONS_00005422-exon-sc0000053-1510915933:400553..400647Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:400553..400647TCONS_00005422-exon-sc0000053-1575043694:400553..400647Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:400899..400957TCONS_00005422-exon-sc0000053-1491911889:400899..400957Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:400899..400957TCONS_00005422-exon-sc0000053-1510915933:400899..400957Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:400899..400957TCONS_00005422-exon-sc0000053-1575043694:400899..400957Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:401169..401222TCONS_00005422-exon-sc0000053-1491911889:401169..401222Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:401169..401222TCONS_00005422-exon-sc0000053-1510915933:401169..401222Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:401169..401222TCONS_00005422-exon-sc0000053-1575043694:401169..401222Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:401569..401674TCONS_00005422-exon-sc0000053-1491911889:401569..401674Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:401569..401674TCONS_00005422-exon-sc0000053-1510915933:401569..401674Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:401569..401674TCONS_00005422-exon-sc0000053-1575043694:401569..401674Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:401947..402058TCONS_00005422-exon-sc0000053-1491911889:401947..402058Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:401947..402058TCONS_00005422-exon-sc0000053-1510915933:401947..402058Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:401947..402058TCONS_00005422-exon-sc0000053-1575043694:401947..402058Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:402343..402436TCONS_00005422-exon-sc0000053-1491911889:402343..402436Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:402343..402436TCONS_00005422-exon-sc0000053-1510915933:402343..402436Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:402343..402436TCONS_00005422-exon-sc0000053-1575043694:402343..402436Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:402813..402969TCONS_00005422-exon-sc0000053-1491911889:402813..402969Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:402813..402969TCONS_00005422-exon-sc0000053-1510915933:402813..402969Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:402813..402969TCONS_00005422-exon-sc0000053-1575043694:402813..402969Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1491911889:403225..404649TCONS_00005422-exon-sc0000053-1491911889:403225..404649Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1510915933:403225..404649TCONS_00005422-exon-sc0000053-1510915933:403225..404649Clytia hemisphaericaexon
TCONS_00005422-exon-sc0000053-1575043694:403225..404649TCONS_00005422-exon-sc0000053-1575043694:403225..404649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:400553..404649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.91484	3.10072	3.32903	2.66438	0	0	0	0.252388	0	0	1.18626	0.582999	0.357263	0	1.5895e-07	1.28384	5.49848	1.34577	1.54832	1.84524	1.34829	0.296771	1.67532	2.75359	0	0	1.95165	3.30611	2.00534	6.97699e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00005422 vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 362.844 bits (930), Expect = 1.243e-120
Identity = 175/209 (83.73%), Postives = 192/209 (91.87%), Query Frame = 2 
Query:   26 MSTGAEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFQQTNKWIEDVKAERGNDVIIMLVGNKTDLAEKRQVATESGEAKAKELGVMFIETSAKAGHNVKQLFRRVASALPGMDSAPEQNK-DLIDVKLEDTPQDAPQEGGGCSC 649
            MSTG +FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSFQQT KWI+DV+ ERG+DVIIMLVGNKTDLA+KRQV+ E GE KAKEL VMFIETSAKAG+NVKQLFRRVA+ALPGM+S  ++++ D+ID+KLE  PQ+ P   GGCSC
Sbjct:    1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLE-KPQEQPVSEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00005422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A1.243e-12083.73Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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