TCONS_00005432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005432
Unique NameTCONS_00005432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005432 ID=TCONS_00005432|Name=TCONS_00005432|organism=Clytia hemisphaerica|type=transcript|length=2158bp
GATTGTCTGGATAGTATTTATACCTTAACTACTAATATGGTAGATTTATG
gatttttacatatctacacatatagtAAAGGGATACATTCAAAAATGACT
TCATACCTTCACCACTCTCGGCAGCTCTTGCTTTCAATTCCATCAATTGA
ATCAAATCCATTCCACCGGTTAATGAACCCGGTAACCGACACGGACTATC
GGGGTCAAGTAAAGGACTAACTGGGTGAACCGGATTTGGTCGCCCAACTG
CTCCAATAGtagtttgttgttgtttacaTTTATCTATTAAATTATTCGAA
ATAATCGGGGAATCTTCTTCTCCCCGATTTGGTATTGCAGGCATTGTTGG
AAGTCTAGGCTCTTCTGGCAATTTATTTTGAGACATTTCTGCTAAAGGGC
TACCTGTTGGTTTACAAGGCGCCCTCGTAGGAGTTAACGTTTCTAGACTA
CCTGCATTGGGTTGGCAGGGAGTTGGTTGTGTTTTAATTTGTGATATAAT
GTCTTGTAGGTTTGCATTAAGAGGTTGGTTACAAGGCTGTGGATGGCACG
GAACAGAGTTTTCTTGATTCGCCGATAGACCCTGCGCATTTGGGTGTCCA
TTCGTTAGTTGTAAtaacatttgttttttttgttcaggGGATAGGCTAGA
AGGATTTGTTAAAAGTTCTGTAAGAAGTTTCTTTTTAATGTTCATTGTAA
GAGTTGGGTCGGAtgatattttttgaagaaaaccaTTAGAATTTACAGCA
TTACTCCCAGTATTATGCAATGAGTAGTCCATTAGATTTTGACCGAGCTG
TGGGTCTGTTGTTGGGCTTGCTTCAAGACCGAGTTTTAGTCGAATTTTCT
CAGTCAATGATTGATCTGAGCCCACACCAAGTTTTTGTAAATGACTTCCA
GTTAAAGATTGTCCAGATATAAGACCAAGCTTTAGTTTAAGTTCTTCTGT
TACTTTATCATCTCCCATTCCGAGATTTTGTAAATGGCCTTCTGTTAAAG
GTTGTGTAGAGCCCAAACCTGGTTTTTGTCTAATTTCGTCGGCCAGTGCT
TGCTTTGATGCGAGAGTCTGACCTGCTAAGGTTGATTGACCACCTCCAGC
ATTCAAATGTTCTCCTGTAGCAAGCTGACCAGCCAAAAGACCTGTATGAC
TGATGCCGAGTTTTTGTAATTGTTCGGCAGTTAGAGTTTGACCGACTCCT
AACCCGAGTTTTTGCCGCATTTCATCGGTAATGGTCGTTTCAGCTCCAGG
TTTTTGAGCGCCACCGAGAATAGATTGCCCAGCCACGCTCCCCTCATGAG
ATGAAATTCGGCCAGTCGCATAACCAGTAGCAAATCCGAACTTTTGCCGA
ATCTTTTCGACCAATAGAAGGCCACCTTCAACACTTTCGAGTTTTAATAA
ATGATGCTCGTTTATTGGTTGATCGGCTTCAAGACCGAGTTTTTCCCGAA
TTTCTACGAGTAATTCTCGTCCACCATCGAGTGTTTCGAAAACTTTTAAA
TGTTCTTCGGTTAAGGGCTGGCCTGCTGCTACACCGAGATGTTGCCGAAT
TTCGTCGGTCAACGACTGTCCACTCCCGACGACCGAGTTTGTTTGTAAGT
TAAGTTTTTGTTGCATTTCATCCGTTAATGCTTGCCCTCCACTAAGTTTT
TGTAAAAGTTCAAAGTTCATATTTTGGCTGGATCCTGCACCTCCAAGACG
AacgatttctttaattttctccGGCGTCAAGTTGTGATTTCCTTCTTGTA
GCAATTGAGttaattgattttgaatttgttgGTTAACACCTGTTTCTTGA
CCTTGTATTGgaacaatttgagaaaatatttgtttcaataCACCATCCGG
GTTTGCGAGATGTAATTTATGATCTGCTTGATGTCCAAACTGAGCTGCTA
GTGTCGTTGCAGTCGGTTGCAGCAAACCTGGATTCCCAATCGGGTCAACG
TCCTCTAAAATCGGGTTACTAGGTGGCGAAGGTGTTGTATTATCGTTCAA
AGATGTCGGGTTTAATCTGGAAATGAGTTCCTGTTTTAATTTCTCAGTCA
TCTCGTTTTCGGTGTCTTCAGGCTCCTCTAGATCACGGTTGACGGTTAAT
GATTCACTAGGTTCTGCATCGTCCAGACGTAGACGTGATTTCAAAAGTTG
AAGCATCG
Run BLAST on NCBI

transcript from alignment at sc0000053:563379..566806+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005432 ID=TCONS_00005432|Name=TCONS_00005432|organism=Clytia hemisphaerica|type=transcript|length=3428bp|location=Sequence derived from alignment at sc0000053:563379..566806+ (Clytia hemisphaerica)
GATTGTCTGGATAGTATTTATACCTTAACTACTAATATGGTAGATTTATG
gatttttacatatctacacatatagtAAAGGGATACATTCAAAAATGACT
TCATACCTTCACCACTCTCGGCAGCTCTTGCTTTCAATTCCATCAATTGA
ATCAAATCCATTCCACCGGTTAATGAACCCGGTAACCGACACGGACTATC
GGGGTCAAGTAAAGGACTAACTGGGTGAACCGGATTTGGTCGCCCAACTG
CTCCAATAGtagtttgttgttgtttacaTTTATCTATTAAATTATTCGAA
ATAATCGGGGAATCTTCTTCTCCCCGATTTGGTATTGCAGGCATTGTTGG
AAGTCTAGGCTCTTCTGGCAATTTATTTTGAGACATTTCTGCTAAAGGGC
TACCTGTTGGTTTACAAGGCGCCCTCGTAGGAGTTAACGTTTCTAGACTA
CCTGCATTGGGTTGGCAGGGAGTTGGTTGTGTTTTAATTTGTGATATAAT
GTCTTGTAGGTTTGCATTAAGAGGTTGGTTACAAGGCTGTGGATGGCACG
GAACAGAGTTTTCTTGATTCGCCGATAGACCCTGCGCATTTGGGTGTCCA
TTCGTTAGTTGTAAtaacatttgttttttttgttcaggGGATAGGCTAGA
AGGATTTGTTAAAAGTTCTGTAAGAAGTTTCTTTTTAATGTTCATTGTAA
GAGTTGGGTCGGAtgatattttttgaagaaaaccaTTAGAATTTACAGCA
TTACTCCCAGTATTATGCAATGAGTAGTCCATTAGATTTTGACCGAGCTG
TGGGTCTGTTGTTGGGCTTGCTTCAAGACCGAGTTTTAGTCGAATTTTCT
CAGTCAATGATTGATCTGAGCCCACACCAAGTTTTTGTAAATGACTTCCA
GTTAAAGATTGTCCAGATATAAGACCAAGCTTTAGTTTAAGTTCTTCTGT
TACTTTATCATCTCCCATTCCGAGATTTTGTAAATGGCCTTCTGTTAAAG
GTTGTGTAGAGCCCAAACCTGGTTTTTGTCTAATTTCGTCGGCCAGTGCT
TGCTTTGATGCGAGAGTCTGACCTGCTAAGGTTGATTGACCACCTCCAGC
ATTCAAATGTTCTCCTGTAGCAAGCTGACCAGCCAAAAGACCTGTATGAC
TGATGCCGAGTTTTTGTAATTGTTCGGCAGTTAGAGTTTGACCGACTCCT
AACCCGAGTTTTTGCCGCATTTCATCGGTAATGGTCGTTTCAGCTCCAGG
TTTTTGAGCGCCACCGAGAATAGATTGCCCAGCCACGCTCCCCTCATGAG
ATGAAATTCGGCCAGTCGCATAACCAGTAGCAAATCCGAACTTTTGCCGA
ATCTTTTCGACCAATAGAAGGCCACCTTCAACACTTTCGAGTTTTAATAA
ATGATGCTCGTTTATTGGTTGATCGGCTTCAAGGCCGAGTTTTTCCCGGA
TTTCTACGAGTAATTCTCGTCCACCATCGAATGTTTCGAAAACTTTTAAA
TGTTCTTCGGTTAAGGGTTGCCCAGCTGCTACACCGAGATGTTGCCGAAT
TTCTTTAATTAATGTTTGGCCGACTCCTATGCCAAGTTTTTGTTGCATTT
CGTCGGCTATCGTCCCAGTTCCAAGTTTTGGAACAGCACCTCCGAAAATT
GACTCCCCCGTCAAAGACCCGACTCTTTCTGTTGAAATGCGGCCAGTTGC
ATAGCCAGTTGCAAATCCGAACTTTTGCCGAATCTTTTCGACCAATATAT
GACCACCTTCAACACTTTCGAGTTTTAATAAATGCTGTTCGTTTATTGGT
TGGTTGACTTCAAGACCGAGTTTTTCCCGAATTTTTACGAGTAATTCTCG
TCCACCATCGAGTGTTTCGAAAACTTTTAAATGTTCTTCGGTTAAGGGCT
GCCCTACCGCTACACCGAGGTGTTGCCGAATTTCGTCGGTCAACGACTGT
CCACTCCCGACGACAGAGCTTGTTTGTAAGTTAAGTTTTTGTTGCATTTC
ATCCGTTAANAAGCTGACCAGCCAAAAGGCCTGTATGACTGATGCCGAGT
TTTTGTAATTGTTCGGCAGTTAGAGTTTGACCGACTCCTAACCCGAGTTT
TTGCCGCATTTCATCGGTAATGGTCGTTTCAGCTCCAGGTTTTTGAGCGC
CACCGAGAATAGATTGCCCAGCCACGCTCCCCTCATGAGATGAAATTCGG
CCGGTCGCATAACCAGTAGCAAATCCGAACTTTTGCCGAATCTTTTCGAC
CAATAGAAGGCCACCTTCAACACTTTCGAGTTTTAATAAATGATGCTCGT
TTATTGGTTGATCGGCTTCAAGACCGAGTTTTTCCCGGATTTCTACGAGT
AATTCTCGTCCACCATCGAATGTTTCGAAAACTTTTAAATGTTCTTCGGT
TAAGGGTTGCCCAGCTGCTACACCGAGATGTTGACGAATTTCTTTAATTA
ATGTTTGGCCGACTCCTATGCCAAGTTTTTGTTGCATTTCGTCGGCTATC
GCCCCAGTTCCAAGTTTTGGAACAGCACCTCCGAAAATTGACTGCCCCGT
CAAAGACCCGACTCCTTCTGTTGAAATGCGGCCAGTTGCATAGCCAGTTG
CAAATCCGAACTTTTGCCGAATCTTTTCGACCAATGTATGACCACCTTCA
ACACTTCCGAGTTTTAATAAATGATGTTCGTTTATTGGTTCGTTGACTTC
AAGACCGAGTTTTTCCCGAATTTCTACGAGTAATTCTCGTCCACCATCGA
GTGTTTCGAAAACTTTTAAATGTTCTTCGGTTAAGGGCTGGCCTGCTGCT
ACACCGAGATGTTGCCGAATTTCGTCGGTCAACGACTGTCCACTCCCGAC
GACCGAGTTTGTTTGTAAGTTAAGTTTTTGTTGCATTTCATCCGTTAATG
CTTGCCCTCCACTAAGTTTTTGTAAAAGTTCAAAGTTCATATTTTGGCTG
GATCCTGCACCTCCAAGACGAacgatttctttaattttctccGGCGTCAA
GTTGTGATTTCCTTCTTGTAGCAATTGAGttaattgattttgaatttgtt
gGTTAACACCTGTTTCTTGACCTTGTATTGgaacaatttgagaaaatatt
tgtttcaataCACCATCCGGGTTTGCGAGATGTAATTTATGATCTGCTTG
ATGTCCAAACTGAGCTGCTAGTGTCGTTGCAGTCGGTTGCAGCAAACCTG
GATTCCCAATCGGGTCAACGTCCTCTAAAATCGGGTTACTAGGTGGCGAA
GGTGTTGTATTATCGTTCAAAGATGTCGGGTTTAATCTGGAAATGAGTTC
CTGTTTTAATTTCTCAGTCATCTCGTTTTCGGTGTCTTCAGGCTCCTCTA
GATCACGGTTGACGGTTAATGATTCACTAGGTTCTGCATCGTCCAGACGT
AGACGTGATTTCAAAAGTTGAAGCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003094XLOC_003094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005432-exon-sc0000053-1491911889:563379..564811TCONS_00005432-exon-sc0000053-1491911889:563379..564811Clytia hemisphaericaexon
TCONS_00005432-exon-sc0000053-1510915933:563379..564811TCONS_00005432-exon-sc0000053-1510915933:563379..564811Clytia hemisphaericaexon
TCONS_00005432-exon-sc0000053-1575043694:563379..564811TCONS_00005432-exon-sc0000053-1575043694:563379..564811Clytia hemisphaericaexon
TCONS_00005432-exon-sc0000053-1491911889:566082..566806TCONS_00005432-exon-sc0000053-1491911889:566082..566806Clytia hemisphaericaexon
TCONS_00005432-exon-sc0000053-1510915933:566082..566806TCONS_00005432-exon-sc0000053-1510915933:566082..566806Clytia hemisphaericaexon
TCONS_00005432-exon-sc0000053-1575043694:566082..566806TCONS_00005432-exon-sc0000053-1575043694:566082..566806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:563379..566806 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0128549	0	0	0.0953783	0	0.0656246	1.45268	2.13993	0.30545	0.337017	1.19474	0.362813	1.18526	0.661966	0.681984	2.32965	1.0395	1.71901	0.0542962	0.145989	0.451184	0.408219	0.045892	0.431149	1.28516	0.460055	0.39762	0.0724824	0.0489621	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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