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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005436 ID=TCONS_00005436|Name=TCONS_00005436|organism=Clytia hemisphaerica|type=transcript|length=2001bpRun BLAST on NCBI protein sequence of TCONS_00005436-protein >TCONS_00005436-protein ID=TCONS_00005436-protein|Name=TCONS_00005436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp MASKSGRNKQDPATIYSIQERIGKGSFGEVYKAIDTKTNHVVAAKIIDLERun BLAST on NCBI transcript from alignment at sc0000053:690490..706248+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005436 ID=TCONS_00005436|Name=TCONS_00005436|organism=Clytia hemisphaerica|type=transcript|length=15759bp|location=Sequence derived from alignment at sc0000053:690490..706248+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:690490..706248+ >TCONS_00005436 ID=TCONS_00005436|Name=TCONS_00005436|organism=Clytia hemisphaerica|type=CDS|length=14619bp|location=Sequence derived from alignment at sc0000053:690490..706248+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005436 vs. Swiss-Prot (Human)
Match: STK24 (Serine/threonine-protein kinase 24 OS=Homo sapiens GN=STK24 PE=1 SV=1) HSP 1 Score: 437.187 bits (1123), Expect = 2.185e-146 Identity = 248/428 (57.94%), Postives = 315/428 (73.60%), Query Frame = 1
Query: 241 KQDPATIYSIQERIGKGSFGEVYKAIDTKTNHVVAAKXXXXXXXXXXXXXXXXXXTVLAQCDSEYVTKYYGSHLKGTKLWIIMEYLGGGSALDLMKAGPFDELYIPIILREVLKGLEYLHSERKLHRDIKAANVLLSEHGAVKLADFGVAGQLTDTMNKRNTFVGTPFWMAPEVIKQSAYDAKADIWSLGITAIELAKGEPPHAELHPMRVLFLIPKNNPPELTGANFTRNFKDFVSSCLHKDPNERQSAKELLRHRFI-RQARKTGVLVDLIDKFRRWRANGGDDMRDDDETNSIL-GDSAGNADTTDPWIFTIKAK-PGNKQNALNKIXXXXXXXXXXXXXXXXXKSNNRSEQQNNAVVAPRAPESRSLHNILLPILGQLKGKHQ---NRASAIDDLENAILVAERTSPGICDAFIGEVTDIVRSH 1506
K DP +++ E+IGKGSFGEV+K ID +T VVA KIIDLEEAEDEIEDIQQEITVL+QCDS YVTKYYGS+LK TKLWIIMEYLGGGSALDL++ GP DE I ILRE+LKGL+YLHSE+K+HRDIKAANVLLSEHG VKLADFGVAGQLTDT KRNTFVGTPFWMAPEVIKQSAYD+KADIWSLGITAIELA+GEPPH+ELHPM+VLFLIPKNNPP L G N+++ K+FV +CL+K+P+ R +AKELL+H+FI R A+KT L +LID+++RW+A D +++++ G ++G +D+ D WIFTI+ K P N +N A + +R++ ++ P+ P S+ L I+ P+ +LK K Q +I++L AI +AE PGI D + ++ ++ +
Sbjct: 29 KADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEG-NYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELIDRYKRWKAEQSHDDSSSEDSDAETDGQASGGSDSGD-WIFTIREKDPKNLENG-----------------ALQPSDLDRNKMKD----IPKRPFSQCLSTIISPLFAELKEKSQACGGNLGSIEELRGAIYLAEEACPGISDTMVAQLVQRLQRY 433 The following BLAST results are available for this feature:
BLAST of TCONS_00005436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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