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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005437 ID=TCONS_00005437|Name=TCONS_00005437|organism=Clytia hemisphaerica|type=transcript|length=2281bpRun BLAST on NCBI transcript from alignment at sc0000053:690564..703892+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005437 ID=TCONS_00005437|Name=TCONS_00005437|organism=Clytia hemisphaerica|type=transcript|length=13329bp|location=Sequence derived from alignment at sc0000053:690564..703892+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005437 vs. Swiss-Prot (Human)
Match: STK24 (Serine/threonine-protein kinase 24 OS=Homo sapiens GN=STK24 PE=1 SV=1) HSP 1 Score: 439.499 bits (1129), Expect = 4.119e-146 Identity = 251/430 (58.37%), Postives = 314/430 (73.02%), Query Frame = 2
Query: 167 KQDPATIYSIQERIGKGSFGEVYKAIDTKTNHVVAAKXXXXXXXXXXXXXXXXXXTVLAQCDSEYVTKYYGSHLKGTKLWIIMEYLGGGSALDLMKAGPFDELYIPIILREVLKGLEYLHSERKLHRDIKAANVLLSEHGAVKLADFGVAGQLTDTMNKRNTFVGTPFWMAPEVIKQSAYDAKADIWSLGITAIELAKGEPPHAELHPMRVLFLIPKNNPPELTGANFTRNFKDFVSSCLHKDPNERQSAKELLRHRFI-RQARKTGVLVDLIDKFRRWRANGGDDMRDDD----ETNSILGDSAGNADTTDPWIFTIKAK-PGNKQNALNKIXXXXXXXXXXXXXXXXXKSNNRSEQQNNAVVAPRAPESRSLHNILLPILGQLKGKHQ---NRASAIDDLENAILVAERTSPGICDAFIGEVTDIVRR 1429
K DP +++ E+IGKGSFGEV+K ID +T VVA KIIDLEEAEDEIEDIQQEITVL+QCDS YVTKYYGS+LK TKLWIIMEYLGGGSALDL++ GP DE I ILRE+LKGL+YLHSE+K+HRDIKAANVLLSEHG VKLADFGVAGQLTDT KRNTFVGTPFWMAPEVIKQSAYD+KADIWSLGITAIELA+GEPPH+ELHPM+VLFLIPKNNPP L G N+++ K+FV +CL+K+P+ R +AKELL+H+FI R A+KT L +LID+++RW+A D + ET+ G ++G +D+ D WIFTI+ K P N +N A + +R++ ++ P+ P S+ L I+ P+ +LK K Q +I++L AI +AE PGI D + ++ ++R
Sbjct: 29 KADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEG-NYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELIDRYKRWKAEQSHDDSSSEDSDAETD---GQASGGSDSGD-WIFTIREKDPKNLENG-----------------ALQPSDLDRNKMKD----IPKRPFSQCLSTIISPLFAELKEKSQACGGNLGSIEELRGAIYLAEEACPGISDTMVAQLVQRLQR 432 The following BLAST results are available for this feature:
BLAST of TCONS_00005437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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